BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34350.1 Length=1678 Score E Sequences producing significant alignments: (Bits) Value Ahg491231 jgi|Araly1|491231|fgenesh2_kg.7__664__AT4G34350.1 2518 0.0 > Ahg491231 jgi|Araly1|491231|fgenesh2_kg.7__664__AT4G34350.1 Length=1633 Score = 2518 bits (1363), Expect = 0.0 Identities = 1559/1650 (94%), Gaps = 27/1650 (2%) Strand=Plus/Plus Query 39 CGTTTTGCTTGCTTGTGCGTTTCTCTCGAACTCTCTCCATGGCTGTTGCGCTCCAATTC- 97 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 CGTCTTGCTTGCTTGTGCGTTTCTCTCGAACTCTCTCCATGGCTGTTGCGCTCCAGTTCT 60 Query 98 AGCCGATTATGCGTTCGACCGGATACTTTCGTGCGGGAGAATCATCTCTCTGGATCCGGA 157 | ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| Sbjct 61 A-CCGATTATGCGTTCGGCCAGATACTTTCGTGCTGGAGAATCATCTCTCTGGATCCGGA 119 Query 158 TCTCTCCGCCGCCGGAAAGCTTTATCAGTCCGGTGCTCGTCTGGCGATGAGAACGCTCCT 217 |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 120 TCTCTCCGGCGCCGGAAAGCTTTATCAGTCCGATGCTCGTCTGGAGATGAGAACGCTCCT 179 Query 218 TCGCCATCGGTGGTGATGGACTCCGATTTCGACGCCAAGGTGTTCCGTAAGAACTTGACG 277 ||||||||| ||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 180 TCGCCATCGATGGTGATGGACTCCGATTTTGATGCGAAGGTGTTCCGTAAGAACTTGACG 239 Query 278 AGAAGCGATAATTACAATCGTAAAGGGTTCGGTCATAAGGAGGAGACACTCAAGCTCATG 337 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 240 AGAAGCGAGAATTACAATCGTAAAGGGTTCGGTCACAAGGAGGAGACACTCAAGCTCATG 299 Query 338 AATCGAGAGTACACCAGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCT 397 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 300 AATCGAGAGTACACCAGTGATATATTGGAGACACTGAAAACAAATGGGTATACGTATTCT 359 Query 398 TGGGGAGATGTTACTGTGAAACTCGCTAAAGCATATGGTTTTTGCTGGGGTGTTGAGCGT 457 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 TGGGGAGATGTTACTGTGAAACTCGCTAAAGCATATGGCTTTTGCTGGGGTGTTGAGCGT 419 Query 458 GCTGTTCAGATTGCATATGAAGCACGAAAGCAGTTTCCAGAGGAGAGGCTTTGGATTACT 517 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 420 GCTGTTCAGATTGCATATGAAGCAAGAAAGCAGTTTCCAGAGGAGAGGCTTTGGATTACT 479 Query 518 AACGAAATCATTCATAACCCGACCGTCAATAAGAGGTTGGAAGATATGGATGTTAAAATT 577 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AACGAAATTATTCATAACCCGACCGTCAATAAGAGGTTGGAAGATATGGATGTTAAAATT 539 Query 578 ATTCCGGTTGAGGATTCAAAGAAACAGTTTGATGTAGTAGAGAAAGATGATGTGGTTATC 637 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 540 ATTCCGGTTGAGGATTCAAAGAAGCAGTTTGATGTAGTAGAGAGAGATGATGTGGTTATC 599 Query 638 CTTCCTGCGTTTGGAGCTGGTGTTGACGAGATGTATGTTCTTAATGATAAAAAGGTGCAA 697 |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 600 CTTCCTGCATTTGGAGCTGGGGTTGATGAGATGTATGTTCTTAATGATAAAAAGGTGCAA 659 Query 698 ATTGTTGACACGACTTGTCCTTGGGTGACAAAGGTCTGGAACACGGTTGAGAAGCACAAG 757 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 ATTGTCGACACGACTTGTCCTTGGGTGACAAAGGTCTGGAACACGGTTGAGAAGCACAAG 719 Query 758 AAGGGGGAATACACATCAGTAATCCATGGTAAATATAATCATGAAGAGACGATTGCAACT 817 ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 720 AAGGGCGAATACACATCAGTAATTCATGGTAAATATAATCACGAAGAGACGATTGCAACT 779 Query 818 GCGTCTTTTGCAGGAAAGTACATCATTGTAAAGAACATGAAAGAGGCAAATTACGTTTGT 877 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 780 GCGTCTTTTGCAGGAAAGTACATCATTGTAAAGAACATGAAAGAGGCGAATTACGTTTGT 839 Query 878 GATTACATTCTCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG 937 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 840 GATTACATTCTCGGTGGCCAATATGATGGATCTAGCTCTACAAAAGAGGAGTTCATGGAG 899 Query 938 AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCAAAGTTGGT 997 ||||||||||||||| ||||||| ||||| ||||| ||| |||||||||||||||||||| Sbjct 900 AAATTCAAATACGCAGTTTCGAAAGGTTTTGATCCTGACCATGACCTTGTCAAAGTTGGT 959 Query 998 ATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAGGAAGATTACTCGAG 1057 ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 960 ATTGCAAACCAAACAACGATGCTTAAGGGAGAAACAGAGGAGATAGGAAAATTACTCGAG 1019 Query 1058 AC-AACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAA 1116 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 -CGAACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAA 1078 Query 1117 CACAATATGCGACGCTACTCAAGAGCGACAAGACGCAATCTATGAGCTAGTGGAAGAGAA 1176 ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1079 CACGATATGCGACGCGACTCAAGAGCGACAAGACGCAATCTATGAACTAGTGGAAGAGAA 1138 Query 1177 GATTGACCTCATGCTAGTGGTTGGCGGATGGAATTCAAGTAACACCTCTCACCTTCAGGA 1236 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1139 GATTGACCTCATGCTAGTGGTCGGCGGGTGGAATTCAAGTAACACCTCTCACCTTCAGGA 1198 Query 1237 AATCTCAGAGGCACGGGGAATCCCATCTTACTGGATCGATAGTGAGAAACGGATAGGACC 1296 |||| |||||||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 1199 AATCGCAGAGGCACGGGGAATCCCATCATACTGGATTGACAGTGAGAAACGGATAGGACC 1258 Query 1297 TGGGAATAAAATAGCCTATAAGCTCCACTATGGAGAACTGGTCGAGAAGGAAAACTTTCT 1356 |||||| |||||||| | ||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 1259 TGGGAACAAAATAGCATCTAAGCTCCATTATGGAGAGCTGGTCGAGAAGGAAAATTTTCT 1318 Query 1357 CCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGGTCGT 1416 ||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1319 CCCGAAGGGACCGATAACCATCGGTGTGACATCAGGTGCATCAACCCCAGATAAGGTCGT 1378 Query 1417 GGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTATTGCAGCTGGCTTG 1476 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1379 GGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTGTTGCAGCTGGCTTG 1438 Query 1477 ATTCGGCATTGTGATCGTATTCAAATACTATT-T--GTCAT---GTCAAGAGTGTACTAA 1530 ||||||| ||||||||||||||||||| |||| | || || |||||||||||||||| Sbjct 1439 ATTCGGCCTTGTGATCGTATTCAAATA-TATTGTTTGTTATTATGTCAAGAGTGTACTAA 1497 Query 1531 AATATA-TGTAGTTGTATGATTTGTCTTTATAACTTTTGTAAGAGGTTTTGTAATTCAAA 1589 |||||| | ||||||||||||| ||||||||||||||||||| || |||| Sbjct 1498 AATATACT-TAGTTGTATGATT-GTCTTTATAACTTTTGTAA----TT--------CAAA 1543 Query 1590 GTCAACATCCTCGTT-ATCTTACTCCACTTAATGTTCTTACCATAATCGCAATTAGACTG 1648 ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1544 GTCAACATCCTTGTTCATCTTACTCCACTTAATGTTCTTACCATAATCGTAATTAGATTG 1603 Query 1649 ATATAGAACTTGAGACTGTGTAAGGCTGTC 1678 ||| ||||||| |||||||||||||||||| Sbjct 1604 ATACAGAACTTAAGACTGTGTAAGGCTGTC 1633 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62925084740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5