BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34550.1 Length=840 Score E Sequences producing significant alignments: (Bits) Value Ahg491203 jgi|Araly1|491203|fgenesh2_kg.7__636__AT4G34550.1 549 1e-155 > Ahg491203 jgi|Araly1|491203|fgenesh2_kg.7__636__AT4G34550.1 Length=705 Score = 549 bits (297), Expect = 1e-155 Identities = 370/404 (92%), Gaps = 9/404 (2%) Strand=Plus/Plus Query 219 TGTCGATGTAATACCTGACATGAACAAAGAACCACCTATTGTTGCGGACAGAGAAAACTC 278 ||||||| |||||||||| |||||||||||||| ||||||| ||| |||||||||||||| Sbjct 174 TGTCGATTTAATACCTGATATGAACAAAGAACCGCCTATTGCTGCTGACAGAGAAAACTC 233 Query 279 GATAGATGGGGAAGAAGAAGAAGCAAGCAGTCAAGCTACTCAAAGTAAGAATGTGGAACA 338 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 GATAGATGGGGACGAAGAAGAAGCAAGCAGTCAAGCTACTCAAAGTAAGAATGTGGAACA 293 Query 339 CTTTCTCAACAACAACACCAACTTGCTCAGAGAGTGCAAGCGTATATGGTCGGACTCTGA 398 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 CTTTCT------CAACACCAACTTGCTCAGAGAGTGCAAGCGTATATGGTCGGACTCTGA 347 Query 399 AACCAACAGTAGATCACAAGTCAAACGTCTGAAGACAAACGCAGCAGATAACAGGGGAAA 458 |||||||| ||||||||| ||||||||||||||||||||| || |||||||||| ||||| Sbjct 348 AACCAACACTAGATCACATGTCAAACGTCTGAAGACAAACACATCAGATAACAGCGGAAA 407 Query 459 TGAAACCAAGAACATGATGGTTTTCGAAGAAGGACCATCA---GGGAAGAAGGTGAACCA 515 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 408 TGAAACCAAGAGCATGATGGTTTTCGAAGAAGGACCATCATCAGGGAAGAAGGTGAACTA 467 Query 516 CTTCTTCCACAGTATATTCGGAATGACCAATCTCGGATCAAGAAGATATCAAAAATTCTC 575 |||||| |||| ||||||||||| | ||| | |||||| |||||||||||||||| ||| Sbjct 468 CTTCTTTAACAGAATATTCGGAATCAACAAACCCGGATCCAGAAGATATCAAAAATCCTC 527 Query 576 CACATCACAAAACAAGAATCTGAATATGGGAGAAGCAGAAGACG 619 ||||||||||| |||||||||||||||||||| || |||||||| Sbjct 528 CACATCACAAATCAAGAATCTGAATATGGGAGGAGGAGAAGACG 571 Score = 233 bits (126), Expect = 1e-60 Identities = 144/153 (94%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1 ATGTCTGAACATTTTATGGGCTTAAGCAAGATTAAGACAGAAAGTTGTGTTCATGGTTAT 60 ||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| Sbjct 1 ATGTCTGAACATTTTATGGGCTTAAACGAGATTAAGACAGAAAGTTGTGTTCGTGGTTAT 60 Query 61 GAATCTGCCTGGTTGAGTCGTTGGACTCCTAGTAACAAAAATGCCAAGGAGATTCACCTA 120 ||||||||||||||||||||||||||||||||||||| | |||||||||||||| || || Sbjct 61 GAATCTGCCTGGTTGAGTCGTTGGACTCCTAGTAACAGAGATGCCAAGGAGATTAACTTA 120 Query 121 CCAGAAGATGGTCACCTATTGAAAGAGTCAACA 153 |||||||||||||| |||||||||||||| ||| Sbjct 121 CCAGAAGATGGTCAACTATTGAAAGAGTCGACA 153 Score = 202 bits (109), Expect = 4e-51 Identities = 129/138 (93%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 703 GGCACTGTGCTAGAGAAGCAGCAGTTTCCAAGTATTGCAGCAATGGCAATGATGAGGAAG 762 ||||||||||||||| | |||||||||||||||||| ||||||||||||||||| |||| Sbjct 571 GGCACTGTGCTAGAG-A--AGCAGTTTCCAAGTATTGTAGCAATGGCAATGATGAAGAAG 627 Query 763 GCTCTGAGCGGTATAAACCCTACCGGTTGTAGAAAGACCAACTCCCTCTTCGTTTGGAAT 822 ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 628 GCTCTGAGCGGTACAAACCCGACCGGCTGTAGAAAGACCAACTCCCTCTTCGTTTGGAAT 687 Query 823 GCTGAGGATTTAAGTTGA 840 |||||||||||||| ||| Sbjct 688 GCTGAGGATTTAAGGTGA 705 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31070177355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5