BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34560.1 Length=1120 Score E Sequences producing significant alignments: (Bits) Value Ahg491201 jgi|Araly1|491201|fgenesh2_kg.7__634__AT4G34560.1 1315 0.0 > Ahg491201 jgi|Araly1|491201|fgenesh2_kg.7__634__AT4G34560.1 Length=987 Score = 1315 bits (712), Expect = 0.0 Identities = 906/996 (91%), Gaps = 28/996 (3%) Strand=Plus/Plus Query 93 ACAAACTGGTCCTTGTTCACCATGACTATTGTTCTTCTTCCTTTGTTTAATCTCCTGATG 152 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||| Sbjct 1 ACAAACTGGTCCATGTTCACCATGACTATTGTTCTTCTTCCTCTGTTTAATCTCTTTATG 60 Query 153 ACAAAACTCTCTG---CTACTCACTTTGTTTCCGTAAATATCACTTCTTTCGAGTGACCT 209 |||||||||||| || ||||||| |||||| |||||||||||||||||||||||||| Sbjct 61 GCAAAACTCTCTGCTTCTTCTCACTTCGTTTCCCTAAATATCACTTCTTTCGAGTGACCT 120 Query 210 AAATCACTTCCACGATCTCTTAAAAAAGCTCc-ttttcttgctttt-ttctgtg---ttt 264 |||||||| |||||||| ||| ||| ||| |||||||| |||| | ||||| ||| Sbjct 121 AAATCACTCCCACGATCCCTT---TAAG-TCCTTTTTCTTG-TTTTGTCCTGTGTTTTTT 175 Query 265 ttctttttGCAAGAATTCATCTTGATGGATCCAATTAAGTTTCAACACTTGAAGATGGAG 324 ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 176 TTCTTTTTGCAAGAAATCATCTTGATGGATCCAATTAAGTTCCAACACTTAAAGATGGAG 235 Query 325 AAATCCAGAGGAATCTTGAATTTCCAAGCAATAAGATCGTTCACGAGCTTGTTCAGACTG 384 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 236 AAATCCAGAGGAATCTTGAATTTCCAAGTAATAAGATCGTTCACGAGCTTGTTCAGACTG 295 Query 385 TTCGAGCTTCTTCTTCTTGTAATCTTGATCTCCAAACTCTCTTTCCCTTCTGTAAAAATC 444 ||||||| ||| ||||| |||||||||| ||||||||||||||||| ||||| ||| || Sbjct 296 ATCGAGCTGCTTTTTCTTCTAATCTTGATTTCCAAACTCTCTTTCCCCTCTGTGAAACTC 355 Query 445 TCTGGGGACATTTTCAAGGAAGCAGCAGTGTTTCTCGTTAGCCCGAGATTCGTTTTCTTC 504 || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 TCCGGGGACATTTTCAGGGAAGCAGCAGTGTTTCTCGTTAGCCCGAGATTCGTTTTCTTC 415 Query 505 ATCGGAAACGCAATTGTAATTACTCTTCTTGCGAAATCCGGACGATACAGCTCGAGTCAC 564 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 416 GTCGGAAACGCAATTGTAATTACTCTTTTTGCGAAATCCGGACGATACAGCTCGAGTCAG 475 Query 565 GAGCCTTCAAAGACAGCAACAGAAGCTGCAAGCAACGATCTTTACCAAGAATTTCTTCAC 624 ||||||| ||||||| |||||||||||| ||| ||||||||||||||||| |||||||| Sbjct 476 GAGCCTTTAAAGACAACAACAGAAGCTGAAAGTAACGATCTTTACCAAGATTTTCTTCAT 535 Query 625 AAGAGTGAGAAGAAGAAACCCGTAGTTTACGCTACGAAAACAGAACAACTAAAGAAGCCG 684 |||||||||||||| ||| | |||||||||| ||||||||||||||||| ||||||||| Sbjct 536 AAGAGTGAGAAGAAAAAATCTGTAGTTTACGAGACGAAAACAGAACAACTGAAGAAGCCG 595 Query 685 AGTGGAGGGA--A-GAGGGTTAGTTTCGGGAGAAGCCAATCGCACAAAGCGTTTGAGGCG 741 ||||||| || | |||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 596 AGTGGAGTGATCAAGAGGGTTAGTTTCGGGAGAAGCCAATCGCAGAAAGCGCTTGAGGCG 655 Query 742 GTTAAGCCGCTGGAGAGTACCAATGGTGAGAAAAACATGAAGAGGTATGTGTCGGAGAAG 801 ||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 656 GTTCAGCCGCTAGAGAGTACCAATGGTGAGAAAACCATAAAGAGGTATGTGTCGGAGAAG 715 Query 802 CATATGAGGGTTTGTGACTCCGACAAGAAAGTAGTGGTGAGAGTTAAGAAACCAGAAGAT 861 ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 716 CATATGAGGATTTGTGACTCCGACAAGAAAGTAGTGGTGAGGGTTAAGAAACCAGAAGAT 775 Query 862 GGAATGAGCAACGAGCAATTTAGGACAAAGATTGAAGCTTTCATCGCTAGACAAAAGAGA 921 |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 776 GGAATGAGTAACGAGCAATTTAGGACAAAGATTGAAGCTTTCATTGCGAGACAAAAGAGG 835 Query 922 ATTCAAAAGGATGAAGAACACTTGATAATCTAGCTAGATCCTCTTTGCTAGTGAATGttt 981 ||||||||| |||||||||| || ||||||||| | |||||||||||||||||||||| Sbjct 836 ATTCAAAAGAATGAAGAACATTTAATAATCTAG--A--TCCTCTTTGCTAGTGAATGTTT 891 Query 982 -ttt-t-ttt-ttttttttt-CCTTCTGGTTAT-A-AA-CTTGAATCCTCTGTTACGTAA 1033 ||| | ||| ||||||||| |||| | ||||| | || ||||||||||||||| | ||| Sbjct 892 GTTTCTGTTTCTTTTTTTTTTCCTTTTTGTTATTATAAACTTGAATCCTCTGTTTCATAA 951 Query 1034 TCTTGTAACTTTGCCTTAGAAATTCTCTTTATCTTT 1069 |||||||||||||||||||||| ||||||||||||| Sbjct 952 TCTTGTAACTTTGCCTTAGAAAATCTCTTTATCTTT 987 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41744594115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5