BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34650.1 Length=1448 Score E Sequences producing significant alignments: (Bits) Value Ahg491190 jgi|Araly1|491190|fgenesh2_kg.7__623__AT4G34650.1 2039 0.0 Ahg944434 jgi|Araly1|944434|scaffold_700663.1 1160 0.0 > Ahg491190 jgi|Araly1|491190|fgenesh2_kg.7__623__AT4G34650.1 Length=1292 Score = 2039 bits (1104), Expect = 0.0 Identities = 1231/1293 (95%), Gaps = 6/1293 (0%) Strand=Plus/Plus Query 1 ATGGGAAGCTTGAGTACGATTTTGAGACATCCGGATGAGTTATATCCGCTCTTGAAGTTG 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAGCTTGAGTACGATTTTGAGACACCCGGATGAGTTATATCCGCTCTTGAAGTTG 60 Query 61 AAACTTGCGATTACGAAAGCTCAGAAGCAGATTCCACTTGAGCCACACTTAGCTTTCTGT 120 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 61 AAACTTGCGATTACGAAAGCTCAGAAGCAGATCCCACTAGAGCCACACTTAGCTTTCTGT 120 Query 121 TATTCAATTCTTCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCACC 180 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TATTCAATGCTCCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCACC 180 Query 181 GAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTGAG 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAGCTTCGTAACGCAGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTGAG 240 Query 241 GATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCA- 299 |||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 241 GATGACACAAGCATACCAATGGAAACCAAAGTTCCAATTCTGATAGCTTTCCACCGTCAC 300 Query 300 TATATACGATGGTGACTGGCATTTTTCATGTGGTACAAAAGAGTATAAACTTCTAATGGA 359 | |||||||||||| ||||||||| ||||||||||||||||| || ||| |||||||||| Sbjct 301 T-TATACGATGGTGGCTGGCATTTCTCATGTGGTACAAAAGATTACAAAGTTCTAATGGA 359 Query 360 CCAATTTCACCATGTTTCTGCAGCTTTTCTGAAACTTGAAAAAGGGTATCAAGAGGCTAT 419 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 360 CCAATTTCACCATGTTTCTGCAGCTTTTCTGGAACTTGAAAAAGGGTATCAAGAGGCTAT 419 Query 420 TGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGAGGTAGA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGAGGTAGA 479 Query 480 AACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTTGGTTTAGGTTT 539 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 480 AACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTGGGTTTAGGTTT 539 Query 540 GTCAAAAATCTTCATTGCTTCGGAATTAGAAATACTGACTCCAGATTGGAAGCAGATTTC 599 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 540 GTCAAAAATCTTCATCGCTTCGGAATTGGAAATACTGACTCCAGATTGGAAGCAGATTTC 599 Query 600 AAATTCTACAGGTTTATTTCTGCAGAAAACAAACATTATCAAAGATTATCTTGAAGACAT 659 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 600 AAATTCTACAGGTTTATTTCTCCAGAAAACAAACATTATCAAAGATTATCTTGAAGACAT 659 Query 660 TAATGAGAGACCAAAGTCGCGCATGTTTTGGCCTCGTGAGATTTGGGGAAAATATGTTGA 719 |||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 660 TAATGAGATACCAAAATCGCGCATGTTTTGGCCTCGTGAGATTTGGGGGAAATATGTTGA 719 Query 720 CAAACTTGAGGACTTCAAAAATGAGGAGAAAGCTACAAAAGCAGTGCAGTGTTTGAATGA 779 ||| || |||||||| ||||||||||||||| | ||| |||||||||||||| | ||||| Sbjct 720 CAATCTCGAGGACTTAAAAAATGAGGAGAAATCAACACAAGCAGTGCAGTGTCTAAATGA 779 Query 780 AATGGTCACTAATGCATTGAATCATGTTGAAGATTGTTTGAAATCCTTGGCTTCACTGCG 839 ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |||| Sbjct 780 AATGGTCACTAATGCGTTGACTCATGTTGAAGATTGTTTGAAATCATTGGCTTCATTGCG 839 Query 840 TGATCCTGCAATATTTCAGTCTTGCGCCATCCCTCAGATCGTGGCGATTGGAACACTTGC 899 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 840 TGATCCTGCAATATTTCAGTCTTGTGCCATCCCTCAGATCGTGGCGATTGGAACACTTAC 899 Query 900 GTTATGCTATAACAATGTACAAGTGTTTAGAGGTGTCGTGAGATTGAGACGAGGTCTAAT 959 |||||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||| Sbjct 900 ATTATGCTATAACAATGTAAAAGTATTTAGAGGCGTCGTGAGACTGAGACGAGGTCTAAT 959 Query 960 AGCTAAAGTCATTGATCGCACAAAGACAATGGATGATGTCTACGGTGCGTTCTATGATTT 1019 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 960 AGCTAAAGTAATTGATCGCACAAAGACAATGGATGATGTCTATGGTGCGTTCTATGATTT 1019 Query 1020 TTCTTGCATGCTACAAACAAAGGTTGACAATAACGATCCAAATGCTATGAAAACATTAAA 1079 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1020 TTCTTGCATGCTACAAACAAAGGTTGACAAGAACGATCCAAATGCCATGAAAACATTAAA 1079 Query 1080 CCGACTCGAAACCATCAAGAAATTTTGCAAAGAAAATGGAGGACTTCACAAAAGAAAATC 1139 |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| Sbjct 1080 CCGACTCGAAACCATCAAGAAAGTTTGCAGAGAAAATGGAGTCCTTCACAAAAGAAAATC 1139 Query 1140 TTATGTTAACGATGAAACACAATCCAAGGCTATCTTTGTTGTAATGTTTGTGCTTCTACT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TTATGTTAACGATGAAACACAATCCAAGGCTATCTTTGTTGTAATGTTTGTGCTTCTACT 1199 Query 1200 GGCCATAGTCGTTGTATAT----CTCAAAGCAAACCAATGTAAGTGACTCTGATTTTGTG 1255 ||||||||||||||||||| ||| ||||||||||| |||| ||||||||||| |||| Sbjct 1200 GGCCATAGTCGTTGTATATATATCTCGAAGCAAACCAACGTAAATGACTCTGATTGTGTG 1259 Query 1256 AAGTCATCATGAACATAATTTCTAGCTTTTTTG 1288 |||||||||| ||||||||||||||||| |||| Sbjct 1260 AAGTCATCATAAACATAATTTCTAGCTTCTTTG 1292 > Ahg944434 jgi|Araly1|944434|scaffold_700663.1 Length=1284 Score = 1160 bits (628), Expect = 0.0 Identities = 1048/1248 (84%), Gaps = 40/1248 (3%) Strand=Plus/Plus Query 1 ATGGGAAGCTTGAGTACGATTTTGAGACATCCGGATGAGT-TATATCCGCTCTTGAAGTT 59 ||||| |||||| | ||||| ||||| |||||||||| | ||||||||||| ||||| | Sbjct 26 ATGGGGAGCTTGGGGACGATGCTGAGATATCCGGATGA-TATATATCCGCTCCTGAAGAT 84 Query 60 GAAACTTGCGATT-ACGAAAGCTCAGAAGCAGATTCCACTTGAGCCACACTTAGCTTTCT 118 ||||| |||||| | |||||| |||||||||| || | ||||||||||| | ||| | Sbjct 85 GAAACGAGCGATTGA-GAAAGCGGAGAAGCAGATCCCCCCTGAGCCACACTGGGGTTTTT 143 Query 119 GTTATTCAATTCTTCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCA 178 | ||||| || || ||||| |||||| |||||||||||| |||||||| ||||| || Sbjct 144 GCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTTTCTCTCGTTATTCAGCAACTCAACA 203 Query 179 CCGAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG 238 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 204 CCGAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG 263 Query 239 AGGATGACACAAGCGTACCAG-TGGA-GATCAAAG-TTCCAATTCTGATAGCTTTCCACC 295 ||||||| |||||| ||||| || | || |||| |||| || |||||||||||||||| Sbjct 264 AGGATGATACAAGCATACCAACTG-ATGA--AAAGGTTCCCATCCTGATAGCTTTCCACC 320 Query 296 GTCA-TATATACGATGGTGACTGGCATTTTTCATGTGGTACAAAAGAGTATAAACTTCTA 354 | || | ||||| | ||||||||||| |||||||||||| || ||||| || ||||| Sbjct 321 GGCACT-TATACAACACTGACTGGCATTATTCATGTGGTACGAACGAGTACAAGGTTCTA 379 Query 355 ATGGACCAATTTCACCATGTTTCTGCAGC-TTTTCTGAAACTTGAAAAAGGGTATCAAGA 413 ||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| Sbjct 380 ATGGACCAATTTCACCATGTTTCTGCAGCCTTTT-TGGAACTTGAAAAAGGGTATCAAGA 438 Query 414 GGCTATTGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGA 473 |||||| || || || |||| ||||||||||||||| ||||||||||| || ||| |||| Sbjct 439 GGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAGGA 498 Query 474 GGTAGAAACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTTGGTTT 533 ||||||||| |||||||||| |||||||||||||| |||| ||| || ||||| ||||| Sbjct 499 GGTAGAAACTGTTGATGACTACGATGAATACTGCCACTATGTTGCTGGGCTTGTGGGTTT 558 Query 534 AGGTTTGTCAAAAATCTTCATTGCTTC-GGAATTAGAAATACTGACTCCAGATTGGAAG- 591 ||||||||| ||| ||||| | || | ||| | ||| | |||| ||| ||||| || Sbjct 559 AGGTTTGTCGAAACTCTTCCTCGCAGCTGGA-TCAGAGGTTTTGACACCAAATTGGGAGG 617 Query 592 CAGATTTCAAATTCTACAGGTTTATTTCTGCAGAAAACAAACATTATCAAAGATTATCTT 651 | |||||| ||||| | ||||||||||| ||||||||||||||||||| |||||| ||| Sbjct 618 C-GATTTCCAATTCAATGGGTTTATTTCTACAGAAAACAAACATTATCAGAGATTACCTT 676 Query 652 GAAGACATTAATGAGAGACCAAAGTCGCGCATGTTTTGGCCTCGTGAGATTTGGGGAAAA 711 || ||||||||||||| |||||| || ||||||||||||||||| ||||||||||| ||| Sbjct 677 GAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCTCGCGAGATTTGGGGCAAA 736 Query 712 TATGTTGACAAACTTGAGGACTTCAAAA-ATGAGGAGAAAGCTACAAAAGCAGTGCAGTG 770 |||| |||||| |||||||| || |||| | |||||||| | || ||| | || ||||| Sbjct 737 TATGCTGACAAGCTTGAGGATTT-AAAATACGAGGAGAACTCAACCAAATCCGTACAGTG 795 Query 771 TTTGAATGAAATGGTCACTAATGCATTGAAT-CATGTTGAAGATTGTTTGAAATCCTTGG 829 |||||||||||||| || ||||| |||| | ||| |||||||||| |||||| | ||| Sbjct 796 CTTGAATGAAATGGTTACCAATGCGTTGA-TGCATATTGAAGATTGCCTGAAATACATGG 854 Query 830 CTTCACTGCGTGATCCTGCAATATTTCAGT-CTTGCGCCATCCCTCAGATCGTGGCGATT 888 || | ||||||||||| | ||||||| || || ||||||||||||||||| |||||||| Sbjct 855 CTGCGTTGCGTGATCCTTCCATATTTCGGTTCT-GCGCCATCCCTCAGATCATGGCGATT 913 Query 889 GGAACACTTGCGTTATGCTATAACAATGTACAAGTGTTTAGAGGTGTCGTGAGATTGAGA 948 ||||||||||| ||||||||||||||||||||||| || ||||| || |||| | |||| Sbjct 914 GGAACACTTGCATTATGCTATAACAATGTACAAGTATTCAGAGGCGTTGTGAAACTGAGG 973 Query 949 CGAGGTCTAA-TAGCTAAAGTCATTGATCGCACAAAGACAATGGATGATGTCTACGGTGC 1007 |||||||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 974 CGAGGTCTAACT-GCTAAAGTCATTGATCGCACAAAGACAATGGCTGATGTCTATGGTGC 1032 Query 1008 GTTCTATGATTTTTCTTGCATGCTACAA-ACAAAGGTTGACAATAACGATCCAAATGCTA 1066 |||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 1033 GTTCTATGATTTCTCTTGCATGCTG-AAGACAAAGGTTGACAAGAACGATCCAAATGCTA 1091 Query 1067 TGAAA-ACATTAAACCGACTCGAAACCA-T-CAAGAAATTTTGCAAAGAAAATGGAGGAC 1123 | || ||| |||||||||||||| | | | || |||| | |||||||| | ||||| | Sbjct 1092 -GTAAGACACTAAACCGACTCGAAGC-AGTTCA-GAAACTCTGCAAAGACACTGGAGTCC 1148 Query 1124 TTCACAAAAGAAAATCTTATGTTAACGATGAAAC-ACAATCCAAGGCTAT--CTTTGTTG 1180 | || || |||||||| |||||||| || ||| |||| |||| | || |||| | Sbjct 1149 TCCATAACAGAAAATCATATGTTAATGAC-AAAGGACAA-CCAAA-CAATGTCTTTCTCA 1205 Query 1181 TAATGTTTGTGCTTCTACTGGCCATAGTCGTTGTATATCTCAAAGCAA 1228 ||||| ||||| |||||||||| |||||| ||| |||||||| ||||| Sbjct 1206 TAATGGTTGTGATTCTACTGGCGATAGTCTTTGCATATCTCAGAGCAA 1253 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54164328390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5