BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34710.1
Length=2908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491183 jgi|Araly1|491183|fgenesh2_kg.7__616__AT4G34710.1 3847 0.0
Ahg931833 jgi|Araly1|931833|scaffold_304290.1 1674 0.0
> Ahg491183 jgi|Araly1|491183|fgenesh2_kg.7__616__AT4G34710.1
Length=2639
Score = 3847 bits (2083), Expect = 0.0
Identities = 2493/2678 (93%), Gaps = 79/2678 (3%)
Strand=Plus/Plus
Query 18 tcttcttcatttccgtcttttccgctaggtttccgtctctgttttttcttgcattttccC 77
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TCTTCTTCATTTCCGTCTTCTCCGCTAGGTTTCCGTCTCTGTTTTTTCTTGCA-TTTCCC 59
Query 78 C-AGAATTCCTTCACATTCTCTCCTTTTCCTCTTTTTAATTCCTCACCACCTCAAATTCT 136
| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 60 CGTGAAATACTTCACATTCTCTCCTTTTCCTCTTTTTATTTCCTCACCACCTCAAA---- 115
Query 137 TCATAAACAAATCCACTTCTGCATGGTTGGGAGAATCTGTTAGAGAATTTTTGTTGTTGT 196
|| | || || |||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 116 TC-----C-AA--CAGTTCTGCATGGTTGGGAGAATCTTTTAGAGAATTTTTGTTGGTCT 167
Query 197 TGGGTTCAGATTTGGAAAATTTCC-----tttttttCGAGTTTCTTCTGAATTATTCATC 251
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 168 TGGGTTCAGATTTGGAAAATTTCCTTTTTTTTTTTTTGAGTTTCTTCTGAATTATTCATC 227
Query 252 GTGGAGATTCTCGGATCGGGAAGGGCTGCGAGAGGTGGTTTTCACGGCGGGGATAGATTC 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GTGGAGATTCTCGGATCGGGAAGGGCTGCGAGAGGTGGTTTTCACGGCGGGGATAGATTC 287
Query 312 ATCTTCTGTCTTCTCCTGAGGGGGTAGCCGAGGCTCCGGCCTCGGCGGTTTTTAAACCCC 371
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 ATCTTCTGCCTTCTCCTGAGGGGGTAGCCGAGGCTCCGGCCTCGGCGGTTTTTAAACCCC 347
Query 372 TACCTTTACAAATTCTGGG-AA--ATTAG------aaaaaaaaaGgtttgatttttcagt 422
|||||| |||||||||||| || ||||| |||||||||| || |||||||||||
Sbjct 348 TACCTTCACAAATTCTGGGAAATTATTAGAAAAAAAAAAAAAAAGCTTCGATTTTTCAGT 407
Query 423 ttttgctctg--ttcttctctcgaaagtttttgtttt-gt-------tcgagaatttc-- 470
|| ||||||| ||| |||||||||||||||| |||| | |||||||||||
Sbjct 408 TTCTGCTCTGTTTTCGTCTCTCGAAAGTTTTTTTTTTCTTCACAAAATCGAGAATTTCTT 467
Query 471 tGTAAAGTGAGATTGTTGATCGTTTGCTGATAAGAGGGTGAAGATAAAGATGCCTGCTTT 530
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 468 TGGAAAGTGAGATTGTTGATCGTTTGCTGATAAGAGGGTGAAGA-AAAGATGCCTGCTTT 526
Query 531 AGCTTGCGTTGATACGTCCTTTGTACCTCCTGCCTACGCCTTCTCCGACACCGCCGGTGA 590
|||||||||||||||||||||||| |||| ||| | || | |||||||||
Sbjct 527 AGCTTGCGTTGATACGTCCTTTGT---TCCT-CCT--G---GCT-----A-CGCCGGTGA 571
Query 591 TGTTTTTATCCCGGCGTCATCACCAACTT---CCGCCGCCGTTGT-------TGTTGACC 640
||| |||||||||||| |||||||||| ||||||||||||| | ||| ||
Sbjct 572 TGTCTTTATCCCGGCG---TCACCAACTTCCGCCGCCGCCGTTGTGGACAGCTCTTG-CC 627
Query 641 GTTGGTCT-CCGTCGCTCTCATCGTCTCTCTATCGAATCGATGGATGGGGAGCCCCTTAT 699
|||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 628 GTTGGTCTACC-TCTCTCTCATCGTCTCTCTATCGAATCGATGGATGGGGAGCTCCTTAT 686
Query 700 TTCATAGCCAATTCGTCTGGTAACATCTCTGTTCGTCCTCATGGCTCTGAAACTTTGCCT 759
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 687 TTCATAGCCAATTCATCTGGTAACATCTCTGTTCGTCCTCATGGCTCTGAAACTTTACCT 746
Query 760 CACCAAGACATCGATTTGCTCAAAATCGTTAAGAAGGTGACGGGTCCGAAATCTTCCGGT 819
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 747 CACCAAGACATCGATTTGCTCAAAATCGTTAAGAAGGTGACGGATCCGAAATCCTCCGGT 806
Query 820 GGTTTAGGATTGCAGCTTCCGTTGATCGTTCGTTTCCCTGATGTGTTGAAGAACCGTCTC 879
||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 807 GGTTTGGGATTGCAGCTCCCGTTAATCGTTCGTTTCCCTGATGTATTGAAGAACCGTCTC 866
Query 880 GAGTGTCTTCAATCTGCGTTTGATTACGCGATTAAAAGTCAAGGATATGATTCTCATTAC 939
||||||||||||||||||||||||| ||| || || ||||||||||||||||||||||||
Sbjct 867 GAGTGTCTTCAATCTGCGTTTGATTTCGCCATCAAGAGTCAAGGATATGATTCTCATTAC 926
Query 940 CAAGGTGTTTATCCGGTGAAATGTAACCAAGATCGATTCGTTGTTGAAGATATTGTCAAG 999
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 927 CAAGGTGTTTATCCTGTGAAATGTAATCAAGATCGATTCGTTGTTGAAGATATTGTCAAG 986
Query 1000 TTTGGATCTTCGTTTCGATTTGGATTAGAAGCTGGTTCTAAACCTGAGATCCTTCTTGCT 1059
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 987 TTTGGATCTTCGTTTCGGTTTGGATTAGAAGCTGGTTCCAAACCTGAGATCCTTCTCGCT 1046
Query 1060 ATGAGCTGCTTGTGTAAAGGTAGCCCTGATGCCTTTCTTGTGTGCAATGGATTCAAAGAT 1119
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1047 ATGAGCTGCTTGTGTAAAGGTAATCCTGATGCCTTTCTTGTGTGTAATGGATTCAAAGAC 1106
Query 1120 GCTGAGTATATATCATTGGCTCTGCTTGGGAGAAAACTGGCGTTGAATACTGTGATTGTG 1179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GCTGAGTATATATCCTTGGCTCTGCTTGGGAGAAAACTGGCGTTGAATACTGTGATTGTG 1166
Query 1180 CTTGAGCAAGAAGAAGAGCTTGATCTGGTTATTGAGCTGAGCCAGAAGATGAATGTGAGG 1239
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1167 CTTGAGCAAGAAGAAGAGCTTGATTTGGTTATTGATTTGAGCCAGAAGATGAATGTGAGG 1226
Query 1240 CCTGTCATTGGGTTAAGGGCTAAGCTGAGGACTAAGCATTCGGGTCATTTCGGATCAACT 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 CCTGTCATTGGGTTAAGGGCTAAGCTGAGGACTAAGCATTCGGGTCATTTCGGATCAACT 1286
Query 1300 TCTGGTGAAAAGGGTAAATTTGGATTGACTACTACTCAGATTGTTCGTGTGGTGAGGAAG 1359
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1287 TCTGGTGAAAAGGGCAAATTTGGATTGACTACTACTCAGATTGTTCGTGTGTTGAGGAAG 1346
Query 1360 CTGCGTCAATCTGGTATGCTTGATTGTCTCCAGCTTCTGCATTTTCATATTGGTTCACAG 1419
||| | |||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1347 CTGAGCCAATCTGGTATGCTTGATTGTCTCCAGCTTTTGCATTTTCATATTGGGTCACAG 1406
Query 1420 ATTCCGTCGACTTCGTTGCTCTCTGATGGTGTCGCCGAGGCTGCTCAGCTTTACTGTGAA 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATTCCGTCGACTTCGTTGCTCTCTGATGGTGTCGCCGAGGCTGCTCAGCTTTACTGTGAA 1466
Query 1480 CTTGTGCGTCTTGGTGCACATATGAAAGTTATTGATATCGGTGGTGGTTTGGGGATTGAC 1539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1467 CTTGTGCGTCTTGGTGCACATATGAAAGTTATTGATATTGGTGGTGGTTTGGGGATTGAC 1526
Query 1540 TACGACGGGTCTAAATCTGGAGAATCGGATCTCTCTGTTGCTTATAGTCTCGAGGAGTAT 1599
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1527 TACGATGGGTCTAAGTCTGGAGAATCGGATCTCTCTGTTGCTTATAGCCTCGAGGAGTAT 1586
Query 1600 GCTGAAGCTGTTGTAGCTTCTGTTCGGGTTGTGTGTGACCGGAGCTCAGTGAAACATCCG 1659
||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||
Sbjct 1587 GCTGAAGCTGTTGTAGCTTCTGTTCGGTTTGTTTGTGACAGGAGGTCAGTGAAACATCCG 1646
Query 1660 GTGATATGCAGCGAAAGCGGTAGAGCGATAGTCTCTCATCATTCTGTGCTGATCTTTGAA 1719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1647 GTGATATGCAGCGAAAGCGGTAGAGCGATAGTCTCTCATCATTCTGTGTTGATCTTTGAA 1706
Query 1720 GCTGTTTCAGCAGATAAACCAATGGTTCATCAAGCAACTCCCG-GCGATATTCAGTTCCT 1778
||||||||||| | |||||||||||| |||||||| ||||| | | ||||||||||||||
Sbjct 1707 GCTGTTTCAGCGGTTAAACCAATGGTGCATCAAGCGACTCCTGAG-GATATTCAGTTCCT 1765
Query 1779 GCTTGAAGGTAATGAGGAAGCTCGAGCCAATTATGAGGATCTTTATGCTGCTGTGATGCG 1838
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1766 GCTCGAAGGTAATGAGGAAGCTCGAGCCAATTATGAGGATCTTTACGCTGCTGTGATGCG 1825
Query 1839 TGGAGACCACGAAAGCTGCCTTCTTTATGTCGATCAGCTGAAGCAGAGGTGTGTTGAAGG 1898
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1826 TGGAGACCACGAGAGCTGCCTCCTTTATGTCGATCAGCTGAAGCAGAGGTGTGTTGAAGG 1885
Query 1899 TTTCAAAGAAGGTGTTTTGAGCATCGAGCAGTTAGCTTCTGTTGATGGTTTATGCGAGTG 1958
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1886 TTTCAAAGAAGGTGTTTTGAGCATCGAGCAATTAGCTTCTGTTGATGGGTTATGCGAGTG 1945
Query 1959 GGTGTTGAAGGCTATAGGCGCATCGGATCCGGTTCATACTTACAATATCAATCTATCAGT 2018
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1946 GGTGTTGAAGGCTATAGGTGCATCGGATCCGGTTCACACTTACAATATCAATCTATCGGT 2005
Query 2019 TTTCACTTCGATTCCTGATCTCTGGGGGATTGATCAGCTGTTCCCTATAGTTCCTATCCA 2078
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2006 TTTCACTTCGATTCCTGATCTCTGGGGGATTGATCAGCTGTTTCCTATAGTTCCTATCCA 2065
Query 2079 TAAGCTCGATCAAAGGCCCGGGGCTCGCGGAATCCTT-TCAGATTTAACGTGTGATAGTG 2137
||||||||||||||||||||||||||| |||||| || || |||||||| || || || |
Sbjct 2066 TAAGCTCGATCAAAGGCCCGGGGCTCGTGGAATC-TTATCGGATTTAACATGCGACAGCG 2124
Query 2138 ACGGGAAGATCAACAAGTTCATAGGCGGTGAATCCAGCTTGCCGTTGCACGAGCTGGACA 2197
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2125 ATGGGAAGATCAACAAGTTCATAGGCGGCGAATCCAGCTTGCCGTTGCATGAGCTGGACA 2184
Query 2198 AGAATGGCAGTGGAGGAAGGTACTTTTTGGGTATGTTCCTTGGAGGGGCTTACGAGGAGG 2257
| |||||| ||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 2185 ACAATGGCGGTGGAGG--G-TACTTTCTGGGTATGTTCCTTGGAGGGGCTTACGAGGAGG 2241
Query 2258 CTCTCGGTGGAGTCCACAATCTGTTTGGTGGACCAAGCGTTGTCCGGGTCTCCCAGAGCG 2317
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2242 CTCTCGGTGGAGTCCACAATCTGTTTGGTGGGCCAAGCGTTGTCCGGGTCTCGCAGAGCG 2301
Query 2318 ATGGACCACACAGCTTTGCAGTGACCCGAGCGGTGCCTGGTCAGTCCTCAGCGGATGTTC 2377
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 2302 ATGGACCACACAGCTTTGCAGTGACGCGAGCCGTGCCTGGTCAGTCCTCAGCTGATGTTC 2361
Query 2378 TCCGAGCAATGCAGCATGAGCCGGAGCTAATGTTTCAGACCCTAAAGCACCGAGCAGAGG 2437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2362 TCCGAGCAATGCAGCATGAGCCTGAGCTAATGTTTCAGACCCTAAAGCACCGAGCAGAGG 2421
Query 2438 AAATGATGCATACCAAAGGTGGTAGCGAAGGTGAAAATGAAGAGGAAGAAGAAGATGATG 2497
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2422 AAATGATGCATACCAAAGGCGGTAGCGAAGGTGAAAATGAAGAGGAAGAAGAAGATGTTG 2481
Query 2498 AGTTCAACAATGTGGCGGCTTCTCTCGACCGTTCGTTCCACAACATGCCGTATCTTGCAA 2557
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2482 AGTTCAACAATGTCGCGGCTTGTCTCGACCGTTCGTTCCACAACATGCCGTATCTTGCGA 2541
Query 2558 CTGAGCAGGCATCGCCAAGTAACTCTCTTTCAGCTGCGATCAGTAACCTTGGGTTTTACT 2617
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2542 CTGAGCAGGCATCGCCAAGTAACTCTCTTTCAGCTGCGATCAGTAACCTCGGGTTTTACT 2601
Query 2618 ACTGCGACGAAGACGTCTACGATTACATCTCTGCGTGA 2655
||||||||||||||| |||||||||| |||||| ||||
Sbjct 2602 ACTGCGACGAAGACGGCTACGATTACCTCTCTGGGTGA 2639
> Ahg931833 jgi|Araly1|931833|scaffold_304290.1
Length=2154
Score = 1674 bits (906), Expect = 0.0
Identities = 1529/1824 (84%), Gaps = 66/1824 (4%)
Strand=Plus/Plus
Query 642 TTGGTCTCCGTCGCTCTCATCGTC-TCTCTATCGAATCGATGGATGGGGAGCCCCTTATT 700
|||||||||||||||||| || || | | || || ||||| ||||||||||| || ||||
Sbjct 120 TTGGTCTCCGTCGCTCTCCTCCTCGT-TGTACCGTATCGACGGATGGGGAGCTCCGTATT 178
Query 701 TCATAGCCAATTCGTCTGGTAACATCTCTGTTCGTCCTCATGGCTCTGAA-ACTTTGCCT 759
|| || ||| | || || |||||||||||||||||||||||||| || ||||| |||
Sbjct 179 TCGCCGCGAATACCTCCGGGAACATCTCTGTTCGTCCTCATGGCTC-AAACACTTTACCT 237
Query 760 CACCAAGACATCGATTTGC-TCAAAATCGTTAAGAAGGTGACGGGTCCGAAATCTTCCGG 818
||||||||||||||| | | | || |||| ||||| || || | |||| | |
Sbjct 238 CACCAAGACATCGATCT-CATGAAGGTCGTGAAGAAAGTAACAGATCCG--A-------G 287
Query 819 TGGTTTAGGATTGCAGCTTCCG-TTGATCGTTCGTTTCCCTGATGTGT-TGAAGAACCGT 876
|||||||||||| ||||||||| || ||||||||||| |||||||| | ||||||| |||
Sbjct 288 TGGTTTAGGATTACAGCTTCCGCTT-ATCGTTCGTTTTCCTGATGT-TCTGAAGAATCGT 345
Query 877 CTCGAGTGTCTTCAATC-TGCGTTTGATTACGCGATTAAAAGTCAAGGATATGATTCTCA 935
|| |||||||||||||| | ||||||||||||||||| | |||||||| |||| ||| ||
Sbjct 346 CTTGAGTGTCTTCAATCAT-CGTTTGATTACGCGATTCAGAGTCAAGGCTATGGTTCACA 404
Query 936 TTACCAAGGTGTTTATCCGGTGAAATGTAACCAAGATCGATTCGTTGTTGAAGATATTGT 995
|||||||||||| || || ||||||||||| |||||||| || || | |||||||||||
Sbjct 405 TTACCAAGGTGTGTACCCTGTGAAATGTAATCAAGATCGGTTTATTATCGAAGATATTGT 464
Query 996 C-AAGTTTGGATCTTCG-TTTCGATTTGGATTAGAAGCTGGTTCTAAACCTGAGATCCTT 1053
| || || ||||| | |||||||| ||||||||||||||||| || |||||||| |||
Sbjct 465 CGAA-TTCGGATC-GAGTTTTCGATTCGGATTAGAAGCTGGTTCGAAGCCTGAGATTCTT 522
Query 1054 CTTGCTATGAGCTGCTTGTGTAAAGGTAGCCCTGATGCCTTTCTTGTGTGCAATGGATTC 1113
||||||||||| || ||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct 523 CTTGCTATGAGTTGTTTGTGTAAAGGTAATCCTGAAGCTTTTCTTGTGTGTAATGGTTTT 582
Query 1114 AAAGA-TGCTGAGTATATATCATTGGCTCTGCTTGGGAGAAAACTGGCGTTGAATACTGT 1172
||||| | |||||||||| ||||||||| || ||||||| ||||||| |||||||||||
Sbjct 583 AAAGACT-CTGAGTATATCTCATTGGCTTTGTTTGGGAGGAAACTGGAATTGAATACTGT 641
Query 1173 GATTGTGCTTGAGCAAGAAGAAGAGCTTGATCTGGTTATTGAGCTGAGCCAGAAGATGAA 1232
|||||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||
Sbjct 642 GATTGTTCTTGAGCAAGAAGAAGAGCTTGATTTGGTTATTGATTTGAGTCAGAAGATGAA 701
Query 1233 TGTGAGGCCTGTCATTGGGTTAAGGGCTAAGCTGAGGACTAAGCATTCGGGTCATTTCGG 1292
||| |||||||| ||||||||||| ||||||||||| || || ||||| |||||||| ||
Sbjct 702 TGTTAGGCCTGTGATTGGGTTAAGAGCTAAGCTGAGAACGAAACATTCTGGTCATTTTGG 761
Query 1293 ATCAACTTCTGGTGA-AAAGGGTAAATTTGGATTGACTACTACTCAGATTGTTCGTGTGG 1351
|| ||||||||||| |||||| || ||||| |||||||| | |||||||||||||||||
Sbjct 762 TTCTACTTCTGGTGAGAAAGGG-AAGTTTGGTTTGACTACGATTCAGATTGTTCGTGTGG 820
Query 1352 TGAGGAAGCTGCGTCAA-TCTGGTATGCTTGATTGTCTCCAGCTTCTGCATTTTCATATT 1410
||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||| |||
Sbjct 821 TGAGGAAGCTGAGTCAAGT-TGGTATGCTTGATTGTCTTCAGCTTCTGCATTTTCACATT 879
Query 1411 GGTTCACAGATTCCGTCGACTTCGTTGCTCTCTGATGGTGTCGCCGAGGCTGCTCAGCTT 1470
||||| ||||||||||| || | ||| | || |||||||| || |||||||| ||||||
Sbjct 880 GGTTCTCAGATTCCGTCCACGGCTTTGTTGTCCGATGGTGTAGCTGAGGCTGCGCAGCTT 939
Query 1471 TACTGTGAACTTGTGCGTCTTGGTGCACATATGAAAGTTATTGATATCGGTGGTGGTTTG 1530
|||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||| |||
Sbjct 940 TACTGTGAGCTTGTCCGTCTTGGTGCTCATATGAAGGTGATTGATATTGGTGGTGGATTG 999
Query 1531 GGGATTGACTACGACGGGTCTAAATCTGGAGAATCGGATCTCTCTGTTGCTTATAGTCTC 1590
|||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1000 GGGATTGATTACGACGGGTCTAAATCGGGGGAGTCGGATCTCTCTGTTGCTTATAGTCTT 1059
Query 1591 GAGGAGTATGCTGAAGCTGTTGTAGCTTCTGTTCGGGTTGTGTGTGACCGGAGCTCAGTG 1650
||||||||||||| ||||||||| || || ||| || |||| ||||| | || || |||
Sbjct 1060 GAGGAGTATGCTGCAGCTGTTGTGGCATCGGTTAGGTTTGTTTGTGATCAGAAATCTGTG 1119
Query 1651 AAACATCCGGTGATATGCAGCGAAAGCGGTAGAGCGATAGTCTCTCATCATTCTGTGCTG 1710
|| ||||| |||||||||||||| || ||| |||| || || |||||||| || ||| ||
Sbjct 1120 AAGCATCCAGTGATATGCAGCGAGAGTGGTCGAGCCATTGTGTCTCATCACTCGGTGTTG 1179
Query 1711 ATCTTTGAAGCTGTTTCAGCAGATAAACCAATGGTTCATCAAGCAACTCCCGGC-GATAT 1769
|||||||||||||| ||||| | | ||| || ||| || | | ||| | ||| |
Sbjct 1180 ATCTTTGAAGCTGTCTCAGCTGGTCAAC-AA-----CATGAA--A-C-CCCAACTGATCT 1229
Query 1770 TCAGTTCCTGCTTGAAGG-TAAT-G-AGGAAGCTCGAGCCA--ATTATGAGGATCTTTAT 1824
|||| |||||||||| || | | |||||| || || | |||| ||| ||||||||
Sbjct 1230 AAAGTTTATGCTTGAAGGGTACTCGGAGGAAG-TC-AGAAATGATTACGAGAATCTTTAT 1287
Query 1825 GCTGCTGTGATGCGTGGAGACCACGAAAGCTGCCTT-CTTTATGTCGATCAGCTGAAGCA 1883
| ||||| ||||||||| || | ||||||||| || |||||||| ||||||||||||||
Sbjct 1288 GGTGCTGCGATGCGTGGTGATCGTGAAAGCTGC-TTGCTTTATGTTGATCAGCTGAAGCA 1346
Query 1884 GAGGTGTGTTGAAGGTTTCAAAGAAGGTGTT-TTGAGCATCGAGCAGTTAGCTTCTGTTG 1942
||| ||||||||||| |||||||||||| | |||||||| || ||||||||| |||||
Sbjct 1347 GAGATGTGTTGAAGGGTTCAAAGAAGGT-TCCTTGAGCATTGAACAGTTAGCTGGTGTTG 1405
Query 1943 ATGGTTTATGCGAGTGGGTG-TTGAAGGCTATAGGCGCATCGGATCCGGTTCATACTTAC 2001
|||| ||||||||||||||| || ||||| || ||||||||||||||||||| |||||||
Sbjct 1406 ATGGGTTATGCGAGTGGGTGATT-AAGGCGATTGGCGCATCGGATCCGGTTCTTACTTAC 1464
Query 2002 AATATCAATCTATCAGTTTTCACTTCGATTCCTGATCTCTGGGGGATTGATCAGCTGTTC 2061
|| |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1465 CATGTCAATCTATCGGTTTTCACTTCGATTCCGGATTTCTGGGGGATTGATCAGCTGTTT 1524
Query 2062 CCTATAGTTCCTATCCATAAGCTCGATCAAAGGCCCGGGGCTCGCGGAATCCTT-TCAGA 2120
||||||||||| |||||||| || || |||||||| | || | || ||| || |||||
Sbjct 1525 CCTATAGTTCCAATCCATAAACTTGACCAAAGGCCTGTCGCGAGAGGGATC-TTATCAGA 1583
Query 2121 TTTAACGTGTGATAGTGACGGGAAGATCAACAAGTTCATAGGCGGTGAATCCAGCTTGCC 2180
||| || || || || ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 1584 TTTGACTTGCGACAGCGACGGAAAGATCAACAAGTTCATAGGCGGAGAATCGAGCTTGCC 1643
Query 2181 GTTGCACGAGCTGGACAAGAATGGC---AGTGGAGGAAGGTACTTTTTGGGTATGTTCCT 2237
||||||||||||||||| |||||| || || || || |||| |||||| ||||||||
Sbjct 1644 ATTGCACGAGCTGGACAACAATGGCTGCAGCGGCGGGAGATACTATTTGGGAATGTTCCT 1703
Query 2238 TGGAGGGGCTTACGAGGAGGCTCTCGGTGGAGTCCACAATCTGTTTGGTGGACCAAGCGT 2297
|| || ||||| || ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1704 AGGTGGAGCTTATGAAGAGGCTCTCGGTGGAGTCCACAATCTGTTCGGAGGACCAAGCGT 1763
Query 2298 TGTCCGGGTCTCCCAGAGCGATGGACCACACAGCTTTGCAGTGACCCGA-GCGGTGCCTG 2356
||||| |||| ||||| |||||||| ||| | || |||||||||| | || ||| ||
Sbjct 1764 GGTCCGCGTCTTGCAGAGTGATGGACCTCACGGATTCGCAGTGACCC-ATGCTGTGA-TG 1821
Query 2357 G-TCAGTCCTCAGCGGATGTTCTCCGAGCAATGCAGCATGAGCCGGAGCTAATGTTTCAG 2415
| ||| ||||| |||||||| ||| ||||||||||||||||||| ||||| |||||||||
Sbjct 1822 GGTCAATCCTCTGCGGATGTCCTCAGAGCAATGCAGCATGAGCCTGAGCTCATGTTTCAG 1881
Query 2416 ACCCT-AAAGCACCGAGCAGAGGA 2438
|| || ||| |||||||| |||||
Sbjct 1882 ACTCTTAAA-CACCGAGCCGAGGA 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109776086090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5