BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34720.1
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888595 jgi|Araly1|888595|Al_scaffold_0007_581 815 0.0
Ahg480541 jgi|Araly1|480541|fgenesh2_kg.3__3242__AT2G16510.1 630 5e-180
Ahg943858 jgi|Araly1|943858|scaffold_700087.1 582 1e-165
Ahg472216 jgi|Araly1|472216|fgenesh2_kg.1__2170__AT1G19910.1 440 9e-123
> Ahg888595 jgi|Araly1|888595|Al_scaffold_0007_581
Length=495
Score = 815 bits (441), Expect = 0.0
Identities = 478/496 (96%), Gaps = 2/496 (0%)
Strand=Plus/Plus
Query 131 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCC 190
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCC 60
Query 191 GCACTCGTTTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 250
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCACTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 120
Query 251 GCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGTTATG 310
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GCTTCTATGGGAGTTATGAGGCCTGAGTTGGTCATGAAATCTATTGTCCCTGTTGTTATG 180
Query 311 GCTGGAGTGTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 370
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTGGTGTTTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 240
Query 371 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGCT 430
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGCT 300
Query 431 TGTGGTCTTGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGTC 490
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 301 TGTGGTCTTGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGTC 360
Query 491 AGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTAT-TTTCGC 549
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 361 AGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTCGGGATGATTCTTATCCTTATCTTT-GC 419
Query 550 AGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTTTCCTCACGAGCTGGCCA 609
||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 420 AGAAGCGCTCGCTCTCTACGGGCTTATTGTGGGAATCATCCTTTCCTCACGAGCTGGCCA 479
Query 610 GTCTAGAGCTGAATGA 625
||||||||| ||||||
Sbjct 480 GTCTAGAGCGGAATGA 495
> Ahg480541 jgi|Araly1|480541|fgenesh2_kg.3__3242__AT2G16510.1
Length=944
Score = 630 bits (341), Expect = 5e-180
Identities = 448/500 (90%), Gaps = 6/500 (1%)
Strand=Plus/Plus
Query 131 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCC 190
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 70 ATGTCTACATTCAGCGGCGATGAAACTGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCC 129
Query 191 GCACTCGTTTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 250
|| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 130 GCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACTGCGAAGAGTGGTGTTGGTGTG 189
Query 251 GCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGTTATG 310
||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 190 GCTTCAATGGGAGTGATGAGACCTGAGTTGGTGATGAAGTCTATTGTTCCTGTTGTTATG 249
Query 311 GCTGGAGTGTTGGGTATCTATGGA-TTGATCATTGCTGTTATCATCAGTACCGGGATTAA 369
||||| || |||||||| |||||| || || ||||||||||| ||||||||||| |||||
Sbjct 250 GCTGGTGTTTTGGGTATTTATGGACTT-ATTATTGCTGTTATTATCAGTACCGGTATTAA 308
Query 370 CCCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGC 429
|| |||||||||||||| ||||| ||||| |||||||| || || ||||||||||||||
Sbjct 309 TCCTAAGGCTAAGTCTTATTACCTATTTGACGGATACGCTCACCTTTCGTCTGGTCTTGC 368
Query 430 TTGTGGTCTTGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGT 489
||||||||||||||| || |||||||| ||||||||||| ||||| || ||||| |||||
Sbjct 369 TTGTGGTCTTGCTGGGCTATCAGCTGGTATGGCCATTGGAATTGTCGGAGATGCGGGTGT 428
Query 490 CAGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTAT-TTTCG 548
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 429 TAGGGCAAATGCGCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTATCTTT-G 487
Query 549 CAGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTT-TCCTCACGAGCTGGC 607
| ||||| |||||||| ||||| ||||||||||| || || ||| || || ||||||||
Sbjct 488 CGGAAGCACTTGCTCTATACGGCCTTATTGTAGGCATTAT-CTTATCTTCTCGAGCTGGT 546
Query 608 CAGTCTAGAGCTGAATGAGA 627
||||| ||||| ||||||||
Sbjct 547 CAGTCCAGAGCAGAATGAGA 566
> Ahg943858 jgi|Araly1|943858|scaffold_700087.1
Length=546
Score = 582 bits (315), Expect = 1e-165
Identities = 439/500 (88%), Gaps = 4/500 (1%)
Strand=Plus/Plus
Query 131 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCC 190
|||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 21 ATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTTCGGCTTCCTTGGCGCTGCCGCA 80
Query 191 GCACTCGTTTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 250
|| || || |||||||||||||||||||| || || || || ||||||||||| || |||
Sbjct 81 GCGCTTGTCTTCTCCTGTATGGGAGCTGCGTACGGGACAGCCAAGAGTGGTGTGGGAGTG 140
Query 251 GCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGTTATG 310
|| |||||||| || ||||| || |||||||||||||| ||||||||||| |||||||||
Sbjct 141 GCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGTTATG 200
Query 311 GCTGGAGTGTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 370
||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 201 GCTGGTGTCTTGGGTATCTATGGTTTGATTATTGCTGTTATCATCAGTACCGGGATTAAC 260
Query 371 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGCT 430
||||||||||| |||||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct 261 CCCAAGGCTAAATCTTACTACCTCTTCGATGGATATGCCCATCTCTCTTCTGGTCTTGCT 320
Query 431 TGTGGTCTTGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGTC 490
||||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||||
Sbjct 321 TGTGGGCTTGCTGGTCTTTCAGCTGGAATGGCCATTGGTATAGTTGGTGATGCTGGTGTC 380
Query 491 AGGGCAAATGCTCAGCAGCCTAAGCTCTTT-GTTGGGATGATTCTTATCCTTATTTTCGC 549
||||| |||||||| ||||| ||||| ||| ||||| |||||||||||||| ||||||||
Sbjct 381 AGGGCCAATGCTCAACAGCCAAAGCT-TTTCGTTGGTATGATTCTTATCCTCATTTTCGC 439
Query 550 AGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTT-TCCTCACGAGCTGGCC 608
||||| || ||||| ||||| || || || || |||||| || ||||| |||||||| |
Sbjct 440 TGAAGCTCTGGCTCTATACGGTCTCATCGTTGGGATCATT-TTGTCCTCCCGAGCTGGTC 498
Query 609 AGTCTAGAGCTGAATGAGAA 628
|||| ||||| |||||||||
Sbjct 499 AGTCCAGAGCCGAATGAGAA 518
> Ahg472216 jgi|Araly1|472216|fgenesh2_kg.1__2170__AT1G19910.1
Length=709
Score = 440 bits (238), Expect = 9e-123
Identities = 410/494 (83%), Gaps = 7/494 (1%)
Strand=Plus/Plus
Query 140 TTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCCGCACTCGTT 199
||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| ||||||
Sbjct 13 TTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGCTCTCGTT 72
Query 200 TTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTGGCTTCTATG 259
||||||||||||||||| || || || || || ||||| || |||||||| || || |||
Sbjct 73 TTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGCGTCGATG 132
Query 260 GGAGTTATGAGACCTGAG-TTGGTGATGAAATCTATTGTCCCTGTTGTTATGGCTGGAGT 318
|| || |||||||| ||| || ||||||||||| ||||| || || ||||||||||||||
Sbjct 133 GGTGTGATGAGACCAGAGCTT-GTGATGAAATCGATTGTTCCGGTGGTTATGGCTGGAGT 191
Query 319 GTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAACCCCAAGGC 378
|| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 192 TTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATTAACCCTAAGGC 251
Query 379 TAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGCTTGTGGTCT 438
||||| ||||| || || ||||| || || |||||||| || |||||||||||||||||
Sbjct 252 CAAGTCGTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTGTGGTCT 311
Query 439 TGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGTCAGGGCAAA 498
|| |||||||| || || ||||| ||||| ||||| || ||||||||||| || || ||
Sbjct 312 CGCCGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAGAGCGAA 371
Query 499 TGCTCAGCAGCCTAAGCTCTTTGTTGGGA-TGATTCTTATCCTTAT-TTTCGCAGAAGCG 556
||| || || || ||| | ||||| |||| ||||||| || || || ||| || || ||
Sbjct 372 TGCACAACAACCCAAGTTGTTTGT-GGGAATGATTCTGATTCTCATCTTT-GCTGAGGCA 429
Query 557 CTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTTTCCTCACGAGCTGGCCAGTCTAGA 616
||||| || ||||| || ||||| || ||||| || || || |||||||| |||||||||
Sbjct 430 CTTGCCCTGTACGGTCTCATTGTTGGCATCATCCTCTCTTCTCGAGCTGGTCAGTCTAGA 489
Query 617 GCTGAATGAGAATC 630
|| || ||| ||||
Sbjct 490 GCCGAGTGA-AATC 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5