BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34740.1
Length=2095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353351 jgi|Araly1|353351|fgenesh1_pg.C_scaffold_7000524 2771 0.0
Ahg480544 jgi|Araly1|480544|fgenesh2_kg.3__3245__AT2G16570.1 1561 0.0
Ahg943852 jgi|Araly1|943852|scaffold_700081.1 449 3e-125
> Ahg353351 jgi|Araly1|353351|fgenesh1_pg.C_scaffold_7000524
Length=2364
Score = 2771 bits (1500), Expect = 0.0
Identities = 1624/1684 (96%), Gaps = 7/1684 (0%)
Strand=Plus/Plus
Query 93 ATGGCGGCCACCTCTAGCAtctcttcttctctatctctcaatgctaaacccaacaagctc 152
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGGCCACCTCTAGCATCTCTTCTTCTCTATCTCTCAATGCTAAACCCAGTAAGCTC 60
Query 153 tctaacaacaacaacaacaaTAAGcctcaccgtttcctccgtaatcccttcctt-aaccc 211
||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TCTAACAAC-AC--CAACAATAAGCCTCACCGTTTCCTCCGTAATCCCTTCCTTAAACCC 117
Query 212 -c-tcctcctcctctttctctcctcttccggcttctatctcctcttcttcttcttctcct 269
| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 118 TCATCTTCCTCCTCCTTCTCTCCTCTTCCCGCTTCTATCTCCTCTTCTTCTTCTTCTCCC 177
Query 270 tcGTTTCCGCTCAGAGTTTCAAACCCTCTTACCCTGTTGGCGGCAGACAACGATGATTAT 329
||| |||| || ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 178 TCGCTTCCTCTTAGAGTTTCAAACCCTCTTACCCTTTTGGCGGCCGACAACGATGATTAT 237
Query 330 GACGAGAAGCCTCGGGAAGAGTGTGGAGTTGTCGGAATCTACGGTGACTCAGAAGCTTCA 389
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 238 GACGAGAAGCCTCGGGAAGAGTGTGGAGTTGTCGGAATCTACGGCGACTCTGAAGCTTCA 297
Query 390 CGACTCTGTTACTTAGCTCTCCATGCGCTTCAGCATCGAGGTCAAGAAGGTGCAGGTATT 449
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 CGGCTCTGTTACTTAGCTCTCCACGCGCTTCAGCATCGAGGTCAAGAAGGTGCAGGTATT 357
Query 450 GTTACCGTTAGTAAAGATAAGGTTCTTCAGACCATTACAGGTGTTGGTTTGGTCTCTGAG 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTTACCGTTAGTAAAGATAAGGTTCTTCAGACCATTACAGGTGTTGGTTTGGTCTCTGAG 417
Query 510 GTTTTCAGTGAATCCAAACTCGATCAATTACCAGGAGACATAGCCATTGGTCATGTCAGG 569
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 418 GTTTTCAGCGAATCCAAACTCGACCAGTTACCAGGAGACATAGCCATTGGTCATGTCAGG 477
Query 570 TACTCGACTGCTGGTTCTTCTATGCTCAAGAACGTTCAGCCGTTTGTTGCTGGTTATCGA 629
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 TACTCTACGGCTGGTTCTTCTATGCTCAAGAATGTTCAGCCGTTTGTTGCTGGTTATCGA 537
Query 630 TTTGGCTCTGTTGGTGTTGCTCACAATGGCAATTTAGTGAATTACACGAAATTGAGAGCT 689
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 TTTGGCTCTGTTGGTGTTGCTCACAATGGGAATTTAGTGAATTACACGAAATTGAGAGCT 597
Query 690 GATTTAGAGGAAAATGGTTCGATTTTCAATACTAGCTCTGATACTGAGGTTGTGCTTCAT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GATTTAGAGGAAAATGGTTCGATTTTCAATACTAGCTCTGATACTGAGGTTGTGCTTCAT 657
Query 750 TTGATTGCCATTTCTAAAGCTAGACCCTTTTTCATGAGAATTGTTGATGCTTGTGAGAAG 809
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 658 TTGATTGCGATTTCTAAAGCTAGACCCTTTTTCATGAGGATTGTTGATGCTTGTGAGAAG 717
Query 810 CTTCAAGGTGCTTATTCGATGGTGTTTGTGACTGAGGATAAGCTTGTTGCTGTTCGTGAC 869
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 718 CTTCAAGGTGCTTACTCGATGGTGTTTGTTACTGAGGATAAGCTTGTCGCTGTTCGTGAC 777
Query 870 CCACATGGGTTTAGGCCTTTAGTTATGGGTAGGAGAAGTAATGGAGCTGTTGTGTTTGCT 929
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 778 CCACATGGGTTTAGGCCTTTAGTTATGGGTAGAAGAAGTAATGGAGCTGTTGTCTTTGCT 837
Query 930 TCTGAGACTTGTGCTCTTGATTTGATTGAAGCTACTTATGAGAGAGAGGTTTATCCTGGT 989
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 838 TCTGAGACTTGTGCTCTTGATTTGATTGAGGCTACATATGAGAGAGAGGTTTATCCTGGT 897
Query 990 GAGGTTTTAGTTGTGGATAAAGATGGTGTCAAATGTCAGTGTTTGATGCCTCATCCTGAG 1049
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 898 GAGGTTTTGGTTGTGGATAAAGACGGTGTTAAATGTCAGTGTTTGATGCCTCATCCTGAG 957
Query 1050 CCAAAGCAATGCATTTTCGAACATATTTACTTCTCGTTGCCTAATTCGATTGTCTTTGGT 1109
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 958 CCTAAGCAATGCATTTTCGAACATATATACTTCTCGTTGCCCAATTCGATTGTCTTTGGT 1017
Query 1110 CGGTCTGTGTATGAGTCTAGGCATGTCTTTGGTGAGATTTTAGCTACTGAGTCACCTGTT 1169
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 CGGTCTGTGTATGAGTCTAGGCATGTCTTTGGTGAGATTTTAGCCACTGAGTCACCTGTT 1077
Query 1170 GATTGTGATGTGGTGATCGCTGTGCCTGACTCGGGTGTTGTGGCTGCTCTTGGTTACGCG 1229
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GATTGCGATGTGGTGATCGCTGTGCCTGACTCGGGTGTTGTGGCTGCTCTTGGTTACGCG 1137
Query 1230 GCTAAAGCTGGTGTAGCGTTTCAGCAAGGTTTGATTAGGTCTCATTATGTTGGAAGGACT 1289
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCTAAAGCTGGAGTTGCGTTTCAGCAAGGTTTGATTAGGTCTCATTATGTTGGAAGGACT 1197
Query 1290 TTCATTGAGCCGTCTCAGAAAATCAGAGATTTTGGAGTGAAGCTGAAGCTATCGCCAGTC 1349
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 1198 TTCATTGAGCCGTCTCAGAAAATCAGAGACTTTGGAGTGAAGCTGAAACTATCGCCTGTC 1257
Query 1350 CGAGGAGTTTTAGAAGGGAAAAGAGTTGTTGTTGTTGATGATTCGATTGTTAGAGGAACA 1409
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1258 CGAGGAGTTTTAGAAGGGAAAAGAGTTGTTGTTGTGGATGATTCGATTGTTAGAGGAACA 1317
Query 1410 ACTTCGTCCAAGATTGTGCGTTTATTGAGAGAAGCGGGTGCGAAAGAGGTTCACATGAGG 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ACTTCGTCCAAGATTGTGCGTTTATTGAGAGAAGCGGGTGCGAAAGAGGTTCACATGAGG 1377
Query 1470 ATCGCGAGTCCTCCTATTATTGCATCTTGTTACTACGGAGTGGACACGCCTAGCTCAAAT 1529
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1378 ATAGCGAGTCCTCCTATTATTGCATCTTGTTACTACGGTGTGGACACGCCTAGCTCAAAT 1437
Query 1530 GAGTTGATATCGAATAGGATGAGTGTTGATGAAATCAGGGATTACATCGGATGTGATTCC 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1438 GAGTTGATATCGAATAGGATGAGTGTTGATGAAATCAGGGATTACATCGGATGCGATTCC 1497
Query 1590 CTTGCGTTTTTGTCGTTTGAGACGTTAAAGAAACATTTGGGGGAAGATTCTAGAAGCTTC 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CTTGCGTTTTTGTCGTTTGAGACGTTAAAGAAACATTTGGGGGAAGATTCTAGAAGCTTC 1557
Query 1650 TGCTATGCATGCTTCACGGGGGACTATCCGGTGAAGCCTACAGAGGATAAGGTGAAGCGA 1709
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1558 TGCTACGCATGCTTCACTGGGGACTATCCGGTGAAGCCCACAGAGGATAAGGTGAAGCGA 1617
Query 1710 GGAGGAGATTTTATCGATGATGGTCTCGTTGGAGGAATCCACAACATTGAAGGAGGTTGG 1769
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1618 GGAGGAGATTTTATCGATGATGGTCTCCTTGGAGGAATCAACAACATTGAAGGAGGTTGG 1677
Query 1770 -GTA 1772
|||
Sbjct 1678 TGTA 1681
> Ahg480544 jgi|Araly1|480544|fgenesh2_kg.3__3245__AT2G16570.1
Length=1893
Score = 1561 bits (845), Expect = 0.0
Identities = 1272/1476 (86%), Gaps = 37/1476 (3%)
Strand=Plus/Plus
Query 316 ACAACGATGATTATGACGAGAAGCCTCGGGAAGAGTGTGGAGTTGTCGGAATCTACGGTG 375
||||||| || | ||||| |||||||| |||||||| || || |||||||||||||| |
Sbjct 239 ACAACGACGAAGACGACGAAAAGCCTCGAGAAGAGTGCGGTGTCGTCGGAATCTACGGCG 298
Query 376 ACT-CAGAAGCTTCACGACTCTGTTACTTAGCTCTCCATGCGCTTCAGCATCGAGGTCAA 434
| | ||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||||
Sbjct 299 A-TCCAGAAGCTTCACGGCTCTGTTACTTAGCTCTCCACGCACTTCAACATCGTGGTCAA 357
Query 435 GAAGGTGCAGGTATTGTTACCGTTAGTAAAGATAAGGTTCTTCAGACCATTACAGGTGTT 494
||||||||||||||||| || ||||| || || || |||||||| |||||||||||||||
Sbjct 358 GAAGGTGCAGGTATTGTAACAGTTAGCAATGAAAAAGTTCTTCAAACCATTACAGGTGTT 417
Query 495 GGTTTGGTCTCTGAGGTTTTCAGTGAATCCAAACTCGATCAATTACCAGGAGACA-TAGC 553
||||| |||||||||||||||| ||||||||||| ||||||||||| || || | | ||
Sbjct 418 GGTTTAGTCTCTGAGGTTTTCAACGAATCCAAACTTGATCAATTACCTGGTGA-ATTCGC 476
Query 554 CATTGGTCATG-TCAGGTACTCGACTGCTGGTTCTTCTATGCTCAAGAACGTTCAGCCGT 612
||||| |||| || | ||||| |||||||| ||||||||||||||||||||||||| |
Sbjct 477 TATTGGCCATGTTC-GTTACTCAACTGCTGGAGCTTCTATGCTCAAGAACGTTCAGCC-T 534
Query 613 TT-GTTGCTGGTTATCGATTTGGCTCTGTTGGTGTTGCTCACAATGGCAATTTAGTGAAT 671
|| || || ||||||||||| || || | |||||||| |||||||| |||||||| |||
Sbjct 535 TTCGTCGCCGGTTATCGATTCGGTTCAATCGGTGTTGCCCACAATGGTAATTTAGTAAAT 594
Query 672 TACACGAAA--TTGAGAGCTGAT--TTAGAGGAAAATGGTTCGATTTTCAATACTAGCTC 727
|||| ||| ||||||||| || || || || || ||||| |||||||||||||||||
Sbjct 595 TACA--AAACTTTGAGAGCT-ATGCTT-GAAGAGAACGGTTCTATTTTCAATACTAGCTC 650
Query 728 TGATACTGAGGTTGTGCTTCATTTGATTGCCATTTCTAAAGCTAGACCCTTTTTCATGAG 787
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 651 TGATACTGAGGTTGTGCTTCATTTGATTGCGATTTCTAAAGCTAGACCGTTTTTTATGAG 710
Query 788 AATTGTTGATGCTTGTGAGAAGCTTCAAGGTGCTTATTCGATGGTGTTTGTGACTGAGGA 847
||| |||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 711 GATTATTGATGCTTGTGAGAAACTTCAAGGTGCTTATTCAATGGTTTTTGTTACTGAGGA 770
Query 848 TAAGCTTGTTGCTGTTCGTGACCCACATGGGTTTAGGCCTTTAGTTATGGGTAGGAGAAG 907
||||||||||||||||||||| || |||||||||| || ||||| ||||||||||||||
Sbjct 771 TAAGCTTGTTGCTGTTCGTGATCCTTATGGGTTTAGACCATTAGTAATGGGTAGGAGAAG 830
Query 908 TAATGGAGCTGTTGTGTTT-GCTTCTGAGACTTGTGCTCTTGATTTGATTGAAGCTACTT 966
||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 831 TAATGGAGCTGTTGT-TTTCGCTTCGGAGACTTGTGCTCTTGATTTGATTGAAGCTACTT 889
Query 967 ATGAGAGAGAGGTTTATCCTGGTGAGGTTTTAGTTGTGGATAAAGATGGTGTCAAATGTC 1026
|||||||||||||||||||||| |||||||| ||||||||||| |||||||| || | ||
Sbjct 890 ATGAGAGAGAGGTTTATCCTGGGGAGGTTTTGGTTGTGGATAAGGATGGTGTGAAGTCTC 949
Query 1027 AGTGTTTGATGCCTCA-TCCTGAGCCAAAGCAATGCATTTTCGAACATATTTACTTCTCG 1085
||||||||||||| | | |||||| |||||||||||||||||||||||||| || |||
Sbjct 950 AGTGTTTGATGCCGAAGTT-TGAGCCTAAGCAATGCATTTTCGAACATATTTATTTTTCG 1008
Query 1086 TTGCCTAATTCGATTGTCTTTGGTCGGTCTGTGTATGAGTCTAGGCATGTCTTTGGTGAG 1145
|||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1009 TTGCCTAACTCGATTGTGTTTGGTCGGTCTGTGTATGAATCTAGGCATGTTTTTGGGGAG 1068
Query 1146 ATTTTAGCTACTGAGTCACCTGTTGATTGTGATGTGGTGATCGCTGTGCCTGACTCGGGT 1205
||||| ||| | ||||| |||||||| || ||||| |||||||||||||||||||| |||
Sbjct 1069 ATTTTGGCTGCAGAGTCGCCTGTTGAGTGCGATGTTGTGATCGCTGTGCCTGACTCTGGT 1128
Query 1206 GTTGTGGCTGCTCTTGGTTACGCGGCTAAAGCTGGTGTAGC-GTTTCAGCAAGGTTTGAT 1264
|||||||||||||||||||| || || ||| | ||||| || |||||| || || |||||
Sbjct 1129 GTTGTGGCTGCTCTTGGTTATGCTGCGAAATCCGGTGT-GCCGTTTCAACAGGGGTTGAT 1187
Query 1265 TAGGTCTCATTATGTTGGAAGGACTTTCATTGAGCCGTCTCAGAAAATCAGAGATTTTGG 1324
||||||||||||||| || |||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1188 TAGGTCTCATTATGTAGGGAGGACTTTCATTGAGCCGTCGCAGAAGATCAGAGACTTTGG 1247
Query 1325 AGTGAAGCTGAAGCTATCGCCAGTCCGAGGAGTTTTAGAAGGGAAAAGAGTTGTTGTTGT 1384
|||||||| ||||| || || || || || |||||||||||||| ||||||||||| ||
Sbjct 1248 TGTGAAGCTTAAGCTGTCTCCTGTTCGTGGGGTTTTAGAAGGGAAGAGAGTTGTTGTGGT 1307
Query 1385 TGATGATTCGATTGTTAGAGGAACAACTTCGTCCAAGATTGTGCGTTTATTGAGAGAAGC 1444
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1308 GGATGATTCGATTGTGAGAGGCACAACTTCGTCTAAGATTGTGCGTTTATTGAGAGAAGC 1367
Query 1445 GGGTGCGAAAGAGGTTCACATGAGGATCGCGAGTCCTCCTATTATTGCATCTTGTTACTA 1504
|||||| ||||||||||| |||||||| || ||||| |||||| | || |||||||||||
Sbjct 1368 GGGTGCAAAAGAGGTTCATATGAGGATTGCTAGTCCACCTATTGTAGCTTCTTGTTACTA 1427
Query 1505 CGGAGTGGACACGCCTAGCTCAAATGAGTTGATATCGAATAGGAT-GAGTGTTGATGAAA 1563
||||||||||| ||||||||| | ||||| ||||| || || || ||| ||||| || |
Sbjct 1428 TGGAGTGGACACACCTAGCTCAGAGGAGTTAATATCCAACAG-ATTGAGAGTTGAGGAGA 1486
Query 1564 TCAGGGA-TTACATCGG-ATGTGATTCCCTTGCGTTTTTGTCGTTT-GAGACGTTAAAGA 1620
| | || || |||||| | | || || ||||||||| | || ||| || || || ||||
Sbjct 1487 TTAACGAGTT-CATCGGGA-GCGACTCTCTTGCGTTTCTATC-TTTCGATACCTTGAAGA 1543
Query 1621 AACATTTGGGGGAAGATTCTA-GAAGCTTCTGCTATGCATGCTTCACGGGGGACTATCCG 1679
|||| || ||| |||| |||| || ||||||||||||| |||||||| || ||||||||
Sbjct 1544 AACACTTAGGGAAAGACTCTAAGA-GCTTCTGCTATGCGTGCTTCACAGGTGACTATCCC 1602
Query 1680 GTGAAGCCTACAGAGGATAAGGTGAAGCGAGG---AGGAGATTTTATCGATGATGGTCTC 1736
|||||||| ||||| | ||||||||| ||||| ||||||||| || ||||| ||||||
Sbjct 1603 GTGAAGCCCACAGAAGTTAAGGTGAAACGAGGGGGAGGAGATTTCATTGATGACGGTCTC 1662
Query 1737 GTTGG-AGGAATCCACAACATTGAAGGAGGTTGGGT 1771
||||| || || | ||||| |||| |||||||||
Sbjct 1663 GTTGGTAGCT-TCGAAAACATCGAAGCAGGTTGGGT 1697
> Ahg943852 jgi|Araly1|943852|scaffold_700081.1
Length=1643
Score = 449 bits (243), Expect = 3e-125
Identities = 939/1268 (74%), Gaps = 76/1268 (6%)
Strand=Plus/Plus
Query 336 AAGCCTCGGGAAGAGTGTGGAGTTGTCGGAATCTACGGTGACTCAGAAGCTTCACGACTC 395
||||||| ||||| || ||||||||||||||| | || ||| | |||||||| || ||
Sbjct 235 AAGCCTCACGAAGAATGCGGAGTTGTCGGAATCCATGGAGACCCTGAAGCTTCCCGGCTT 294
Query 396 TGTTACTTAGCTCTCCATGCGCTTCAGCATCGAGGTCAAGAAGGTGCAGGTATTGTTA-C 454
| |||||| ||||| || || || || || || || |||||||| ||||| |||| || |
Sbjct 295 TCTTACTTGGCTCTTCACGCACTGCAACACCGTGGCCAAGAAGGAGCAGGAATTG-TAGC 353
Query 455 CGTTAGTAAAGATAAGGTTCTTCAG-A-CCATTACAGGTGTTGGTTTGGTCTCTGAGGTT 512
|| || | || | | || || || | | | || ||||| || || || ||||| || ||
Sbjct 354 CGCTAATCAA-A-ACGG-TC-TC-GAATCAATCACAGGGGTCGGATTAGTCTCAGATGTG 408
Query 513 TTCAGTGAATCCAAACTCGATCAAT-TACCAGGAGACATAGCCATTGGTCATGTCAGGTA 571
|||| || || ||||| | ||| | || || |||||||| || || |||||| ||||
Sbjct 409 TTCACCGAGTCAAAACT-AAAAAATCTTCCTGGCGACATAGCGATAGGGCATGTCCGGTA 467
Query 572 CTCGACTGCTGGTTCTTCTATGCTCAAGAACGTTCAGCCGTTT-GTTGCTGGTTATCGA- 629
||| ||| | || |||| ||||||||||| |||||||| ||| | ||| | | | |
Sbjct 468 CTCAACTTCCGGAGCTTCAATGCTCAAGAATGTTCAGCC-TTTCATCGCTAGCT-GCAAG 525
Query 630 TTTGGCTCTGTTGGTGTTGCT-CACAATGGCAATTTAGTGAATTACACGAAATTG-AGAG 687
| || || ||| || | | |||||||| ||||| |||||||||| | || || |||
Sbjct 526 CTAGGATCACTTGCAGTAG-TGCACAATGGTAATTTCGTGAATTACAAGCAACTGAAGA- 583
Query 688 CTGATTTAGAGGAAAATGGTTCGATTTTCAAT-ACTAGCTCTGATACTGAGGTTGTGCTT 746
| | | || || || || || || ||| || || || |||||||| ||| | || |||
Sbjct 584 CAAAGCTGGAAGAGAAGGGCTCAATCTTC-ATCACAAGTTCTGATACCGAGCTCGTTCTT 642
Query 747 CATTTGATTGCCATTTCTAAAGCT-AGACCCTTT-TTCATGAGAATTGTTGATGCTTGTG 804
|| |||| |||| ||||| ||| ||| | ||| || |||| | ||||||||||||
Sbjct 643 CACCTGATCGCCAAATCTAAGGCTAAGA-CGTTTCTT-TTGAGGGTCATTGATGCTTGTG 700
Query 805 AGAAGCTTCA-AGGTGCTTATTCGATGGTGTTT-GTGACTGAGGATAAGCTTGTTGCTGT 862
|||||||| | ||||||||| |||||||| ||| || ||| || |||||| |||||||
Sbjct 701 AGAAGCTT-AGAGGTGCTTACTCGATGGT-TTTCGTCTTTGAAGACAAGCTTATTGCTGT 758
Query 863 TCGTGACCCACATGGGTTTAGGCC-TTTAGTTATGGGTAGGAGAAGTAATGGAGCTGTTG 921
||||||||| ||||||||| || || || ||||| || ||||| || ||||| ||||
Sbjct 759 TCGTGACCCGTTTGGGTTTAGACCACTT-GTGATGGGCAGAAGAAGCAACGGAGCAGTTG 817
Query 922 TGTTTGCTTCTGAGACTTGTGCTCTTGATTTGATTGAAGCTACTTATGAGA-GAGAGGTT 980
| ||||| || |||||||| ||||| || ||||||| |||| |||||| | | || ||
Sbjct 818 TTTTTGCCTCCGAGACTTGCGCTCTGGACCTGATTGATGCTATTTATGA-ACGTGAAGTG 876
Query 981 TATCCTGGTGAGGTTTTAGTTGTGGAT--AAA-GATGGTGTCAAATGTCAGTGTT--TGA 1035
| ||| || ||| || | || |||||| ||| |||| | | | | ||| |||| |||
Sbjct 877 TGTCCCGGAGAGATTGTGGTGGTGGATAGAAATCATGGAGAC-AGT-TCAATGTTCATGA 934
Query 1036 TGC-CTCATCCTGAGCCAAAGCAATGCATTTTCGAACATATTTACTTCTCGTTGCCTAAT 1094
| | |||| ||||| ||||| || ||| |||| || ||| ||||||||| ||| ||
Sbjct 935 T-CTCTCACCCTGAACCAAAACAGTGCGTTTTTGAGCATGGTTACTTCTCACAGCCCAAC 993
Query 1095 TCGATTGTCTTTGGTCGGTCTGTGTATGAGTCTA-G--GCATGTCTTTGGTGAGATTTTA 1151
|| ||||||||||| || ||||||||||| | | | ||||| | || ||||| ||
Sbjct 994 TCAATTGTCTTTGGCCGTTCTGTGTATGAAAC-ACGCCGCATG--TACGGCGAGATCCTA 1050
Query 1152 GCTACTGAGTCACCTGTTGATTGTGATGTGGTGATCGCTGTGCCTGACTCGGGTG-TTGT 1210
|| || | | ||||||| ||||||||||| || ||||| ||||| |||||||| | ||
Sbjct 1051 GCCACCGTGGCACCTGTCGATTGTGATGTCGTCATCGCAGTGCCAGACTCGGG-GACAGT 1109
Query 1211 GGCTGCTCTTGGTTACGCGGCTAAAGCTGGTGTAG-CGTTTCAGCA-AGGT-TTGATTAG 1267
||| |||||||| || || || |||||||| || | |||| ||| | ||| || | ||
Sbjct 1110 GGCAGCTCTTGGATATGCAGCCAAAGCTGGAGT-GCCGTTCCAG-ATTGGTCTT-CTCAG 1166
Query 1268 GTCTCATTATGTTGGAA-GGAC-TTTCATTGAGCCGTCTCAGAAAATCAGAGATTTTG-G 1324
||| || |||| || | || ||| || |||||| ||||||||||| | ||||| | |
Sbjct 1167 GTCACACTATG-CAAAACGCACGTTT-ATAGAGCCGACTCAGAAAATCCGTGATTTCGCG 1224
Query 1325 AGTGAAGCTGAAGCTATCGCCAGTCCGAGGAGT-TTTAGAAGGGAAAAGAGTTGTTGTTG 1383
|||||| |||||||||| || ||||||| ||| || |||||||| | || || || |
Sbjct 1225 -GTGAAGGTGAAGCTATCTCCTGTCCGAGCAGTCCTT-GAAGGGAAGCGGGTGGTAGTAG 1282
Query 1384 TTGATGATTCGATTGTTAGAGGAACAACTTCG-TCCAAGATTGTGC-GTTTATTGAGAGA 1441
| || || || ||||| | || || || | | ||||| || | | | || |||||
Sbjct 1283 TGGACGACTCTATTGTCCGCGGTACCAC-GAGTTTGAAGATAGTTCGGATGCTT-AGAGA 1340
Query 1442 AGCGGGTGCGAAA-GAGGTTCACATGAGGA-TCGCGAGT-CCTCCTATTATTGCATCTTG 1498
|| || || ||| |||||||| |||| || |||| | | || || || |||||||||||
Sbjct 1341 CGCCGGAGC-AAAGGAGGTTCATATGA-GAGTCGC-ATTGCCACCGATGATTGCATCTTG 1397
Query 1499 TTACTACGGAGTGGACACGCCTAGCT-CAAATGAGTTGATATCGAATAGGATGAGTGTTG 1557
|||||||||||||||||| || || | || |||||||| || | || |||||| ||||
Sbjct 1398 TTACTACGGAGTGGACACCCCGAGGAGCCAA-GAGTTGATCTCTAGTAAGATGAGCGTTG 1456
Query 1558 ATGAAATC 1565
| | ||||
Sbjct 1457 AGGCAATC 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78808716905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5