BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34920.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944406 jgi|Araly1|944406|scaffold_700635.1 1602 0.0
Ahg944405 jgi|Araly1|944405|scaffold_700634.1 881 0.0
> Ahg944406 jgi|Araly1|944406|scaffold_700635.1
Length=1001
Score = 1602 bits (867), Expect = 0.0
Identities = 954/997 (96%), Gaps = 2/997 (0%)
Strand=Plus/Plus
Query 39 cttcatcatcaatctctcaagacatgctctcttttttctctAACCAGATCGACCGGCAAA 98
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2 CTTCTTCATCAATCTCTCAAAACATGCTCTCTTTTTTCTCTAACCAGATCGACCGGCAAA 61
Query 99 AAGATGTGTCTAATGAGGAAAAAACCCTAACCAATCTCGAAAAATCTGACGGTTCACAAT 158
|||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 62 AAGATGTGTCCAATGAGGAAAAAACCCTAACTGATCTCGAAAAATCCGACGGTTCACAAT 121
Query 159 TCCCTGGCGATGACTACCGTCCGTCCGATCGGAAAAACTGGATGGCTGGTCTTACGTTGG 218
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 122 TCCCTGGCGATGACTACCGTCCGTCCGATCGGAAAAACTGGATGGCCGGTCTTACTTTGG 181
Query 219 AGAAACTAACTCTAAACAAGATCGTGTGGCCAGGAACGCATGATTCAGCCACCAACGATA 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AGAAACTAACTCTAAACAAGATCGTGTGGCCAGGAACGCATGATTCAGCCACCAACGATA 241
Query 279 TCGGAATACCTCTGATCTCTCGTCCTTTAGCTGAATGCCAATCGCTCTCTATCTACGAGC 338
||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 242 TCGGAATACCTCTGATCTCTCGTCCCTTGGCTGAATGCCAAACGCTCTCTATCTACGAGC 301
Query 339 AGCTCGTCCTCGGGACACGTGTCCTCGATATCCGTGTGCAAGAGGATCGCCAAATCTGCC 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AGCTCGTCCTCGGGACACGTGTCCTCGATATCCGTGTGCAAGAGGATCGCCAAATCTGCC 361
Query 399 ACGGGATTCTGACGTCATACGAAATTGATGTTGTCATTGATGACGTTATCAGATTCTTGT 458
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
Sbjct 362 ACGGGATTCTGACGTCATACGACGTTGATGTGGTCATCGATGACGTTATCAGATTCTTAT 421
Query 459 CGGAGACTCACTCGGAGATTGTAATCCTGGAGATAAGGACTGAGTTTGGACACAAAGATC 518
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 422 CGGAGACTCACTCGGAGATTGTAATCCTGGAGATTAGGACTGAGTTTGGACACAAAGATC 481
Query 519 CTCCGGGGTTCGAGACTTACTTGGCAGACAAGTTAGGTCAATTCTTGATACATCAAGATG 578
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 482 CTCCGGAGTTCGAGACTTACTTGGCAGATAAGTTAGGTCAATTCTTGATACATCAAGATG 541
Query 579 ATAGCTTGTTCAACAAGCCGGTATCAGAGATTTTGCCGAAAAGGGTTATATGCATCTGGA 638
||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 542 ATAACTTGTTCAACAAGCCGGTTTCAGAGATTTTGCCGAAAAGGGTTATTTGCATCTGGA 601
Query 639 AACCTAGAGAGTCTCCAAAGCCGAGCCGTGGTGGAATTCTCTGGAACTCAGATTATCTAA 698
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AACCTAGAGAGTCTCCGAAGCCGAGCCGTGGTGGAATTCTCTGGAACTCAGATTATCTAA 661
Query 699 AAGATAATTGGATCGATACGGATCTTCCATGGACGAAATTTCAGAGCAATTTGAAGCATC 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AAGATAATTGGATCGATACGGATCTTCCATGGACGAAATTTCAGAGCAATTTGAAGCATC 721
Query 759 TGAGTGAGCAGCAGCCGACATCTTCTAGAAAATTCTTTTACCGGGTTGAGAACACGGTCA 818
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 722 TGAGTGAGCAGCAACCGATATCTTCTAGAAAATTCTTTTACCGGGTTGAGAACACGGTTA 781
Query 819 CGCCGCAAGCAGATAATCCGGTTGTGTGGGTTAAACCGGTGACTGATCGGATCCGAAAAC 878
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 782 CGCCGCAAGCAGATAATCCAGTTGTGTGGGTTAAACCAGTGACTGATCGGATCCGAAAAC 841
Query 879 ACGCCAGACTATTTATTTCTCAGTGTGTTTCCAAGGGATGTGGAGATAAGTTGCAGATTT 938
|||| || || |||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 842 ACGCTAGGCTTTTTATTTCCCAGTGTGTTTCCAAAGGATGTGGAGATAAGTTACAGATTT 901
Query 939 TGTCCACTGATTTCATCGAAGGAGATTTCGTTGATGCCTGTGTCGGCCTTACTCACGCAA 998
|||||||||||||||| ||||||||||| || |||||||| ||||| || ||||||||||
Sbjct 902 TGTCCACTGATTTCATTGAAGGAGATTTTGTCGATGCCTGCGTCGGACTCACTCACGCAA 961
Query 999 GAATCGAAGG-AAAGGTTTGATAGAACTCTGGAACGA 1034
|||||||||| |||| |||||||||||| ||||||||
Sbjct 962 GAATCGAAGGGAAAG-TTTGATAGAACTATGGAACGA 997
> Ahg944405 jgi|Araly1|944405|scaffold_700634.1
Length=1084
Score = 881 bits (477), Expect = 0.0
Identities = 770/910 (85%), Gaps = 26/910 (3%)
Strand=Plus/Plus
Query 120 AAACCCTA-ACCAATCTCGAAAAATCTGACGGTTCACAATTCCCTGGCGATGACTACCGT 178
||| |||| | ||||||| || ||||| | ||||| || |||||||| ||||||||||
Sbjct 166 AAATCCTAGA-CAATCTCCAAGAATCTAATGGTTCGCATTTCCCTGGGGATGACTACC-A 223
Query 179 C-CGTCCGATCGGAAAAACTGGATGGCTG-GTCT-TACGT-TGGAGAAACTAACTCTAAA 234
| || |||||||||| ||||||||||| | ||| | | | |||| || ||||| || ||
Sbjct 224 CTCGCCCGATCGGAAGAACTGGATGGC-GCATCTCT-C-TGTGGATAAGCTAACCCTTAA 280
Query 235 CAAGATCGTGTGGCCAGGAACGCATGATTCAGCCACCAAC-GATATC-GGAATACCTCTG 292
||||||||||||||| |||||||| || |||||||||||| || ||| || | ||| ||
Sbjct 281 CAAGATCGTGTGGCCCGGAACGCACGACTCAGCCACCAACGGA-ATCGGGGA-CCCTGTG 338
Query 293 ATCTCTCGTCCTTTAGCTGAATGCCAATCGCTCTCTATCTACGAGCAGCTCGTCCTCGGG 352
|| ||||| || | |||||||||| |||| || |||| || ||||| || || ||
Sbjct 339 TTCACTCGTTGGTTGGGTGAATGCCAAACGCTTTCCATCTTTGACCAGCTAGTTCTTGGA 398
Query 353 ACACGTGTCCTCGATATCCGTGTGCAAGAGGATCGCCA-AATCTGCCACGGGA-TTCTGA 410
||||||||||||||||||||| | || || || || || ||||||| ||| ||||
Sbjct 399 ACACGTGTCCTCGATATCCGTATACAGGAAGACCG-CAGTGTCTGCCA-TGGAGCTCTGT 456
Query 411 CGTCATACGAA-ATTGATGTTGTCATTGATGACGTTATCAGATTCTTGTCGGAGACTCAC 469
|||| ||| || ||||||| ||| | ||||||| | ||||| ||||||||||| ||
Sbjct 457 CGTCGTAC-AACGTTGATGTCGTCCTCAATGACGTCGTTAGATTTTTGTCGGAGACCCAA 515
Query 470 TCGGAGATTGTAATCCTGGAGATAAGGACTGAGTTTGGACACAAAGATCCTCCGGGGTTC 529
|| ||||| ||||||| ||||||||||| |||||| | | ||||| ||| ||| |||
Sbjct 516 TCTGAGATCATAATCCTTGAGATAAGGACCGAGTTTAAAAAGAAAGACCCTATGGGATTC 575
Query 530 GAGACTTACTTGGCAGACAAGTTAGGTCAATTCTTGATACATCAAGATGATAGCTTGTTC 589
||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||
Sbjct 576 GAGGCTTACTTGGCAGACAAGATAGGTCAATTCTTGATACATCAAGACGATAACTTGTTC 635
Query 590 AACAAGCCGGTATCAGAGATTTTGCCGAAAAGGGTTATATGCATCTGGAAACCTAGAGAG 649
|||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 636 GACAAACCGATATCAGAGATTTTGCCGAAAAGGGTTATTTGCATCTGGAAACCAAGAGAC 695
Query 650 TCTCCA-AAGCCGAGCCGTGGTGGAATTCTCTGGAACTCAGATTATCTAAAAGATAATTG 708
||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 696 TCT-CAGAAGCCGCGCCGTGGTGGACTTCTCTGGAACTCAGATTATCTAAAAGATAATTG 754
Query 709 GATCGATACGGATCTTCCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGTGAGCA 768
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 755 GATCGATACAGATCTTCCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGCGAACA 814
Query 769 GCAGCCGACATCTTCTAGAAAATTCTTTTACCGGGTTGAGAACACGGTCACGCCGCAAGC 828
||| || | ||||| ||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 815 GCAACCAATATCTTATAGAAGATTCTTTTACCGGGTTGAGAACACGGTTACTCCGCAAGC 874
Query 829 AGATAATCCGGTTGTGTGGG-TTAAACCGGTGACTGATCGGATCCGAAAACACGCCAGAC 887
|||||||| |||||| |||| ||||||||||||||||||| |||||||||||||| || |
Sbjct 875 AGATAATCTGGTTGT-TGGGGTTAAACCGGTGACTGATCGAATCCGAAAACACGCAAGGC 933
Query 888 TATTTATTTCTCAGTGTGTTTCCAAGGGATGTGGAGATAAGTTGCAGATTTTGTCCACTG 947
||||||| |||||||||||||||| |||||||||||| |||||||| ||| |||| ||||
Sbjct 934 TATTTATATCTCAGTGTGTTTCCAGGGGATGTGGAGACAAGTTGCAAATTCTGTCGACTG 993
Query 948 ATTTCATCGAAGGAGATTTCGTTGATGCCTGTGTCGGCCTTACTCACGCAAGAATCGAAG 1007
||||||| |||||||||||||| |||||||| || || || ||||| || ||||||||||
Sbjct 994 ATTTCATTGAAGGAGATTTCGTGGATGCCTGCGTTGGACTCACTCATGCGAGAATCGAAG 1053
Query 1008 G-AAAGGTTT 1016
| |||| |||
Sbjct 1054 GGAAAG-TTT 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5