BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34960.1 Length=1186 Score E Sequences producing significant alignments: (Bits) Value Ahg491161 jgi|Araly1|491161|fgenesh2_kg.7__594__AT4G34960.1 1677 0.0 > Ahg491161 jgi|Araly1|491161|fgenesh2_kg.7__594__AT4G34960.1 Length=1150 Score = 1677 bits (908), Expect = 0.0 Identities = 1099/1184 (93%), Gaps = 41/1184 (3%) Strand=Plus/Plus Query 2 CTGAAAAAACACACTGCAATTGAGATCGATTTCGACTGTAAGTGAACTTTGATTGCCGCG 61 ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1 CTGAAGAAACACACTGCAATTGAGATCGATTTCGACTGTGAGTTAACTTTGATT------ 54 Query 62 AAGATTACTCAAATCGCCGGACACAAGTTTTTCAGTGAATTCCATTGGCATAGAACTCga 121 | | |||| || |||||| |||||||||||||| ||| |||||||||| || Sbjct 55 --G------C---TCGCTGGTCACAAGCTTTTCAGTGAATTCGATT-GCATAGAACTAGA 102 Query 122 gagaaagagacacagagagagagagagaTCTAACAAGAGTCAAAGTTTCTGACTTTTTCG 181 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 103 GAGAAAGAGACACAGAGAGAGAGAGAGATCTAACACGAGTCGAAGTTTCTGACTTTTTCC 162 Query 182 CATTC--TTTTTGAGATCGAGTTCT-GTTTTTGTTGGCGTGTGAGATGAATTCTTaagaa 238 ||||| |||||||||||||||||| || |||||||||||||||||||||||||||| || Sbjct 163 CATTCTTTTTTTGAGATCGAGTTCTGGTGTTTGTTGGCGTGTGAGATGAATTCTTAACAA 222 Query 239 ggaagaagaagaagaaggaaagaTGCGTAGAGAGATCTCGTTTTTGCTACAGCCCAGGTG 298 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 -G--GAAGAAGAAGAACGAAAGATGCGTAGAGAGATCTCGTTTTTGCTACAGCCCAGGTG 279 Query 299 TCTTCTTCTTCTCGTTGCCCTAACGATTTTCCTCGTCTTCGCGCTCTTCAACACCGGAAA 358 ||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 280 TCTTCTTCTCCTCGTTGTCCTAACGATTTTCCTCGTCTTCGCGCTCTTCAACTCCGGAAA 339 Query 359 AGATGAGGAGAAGCAAGTAATTGAAGATCATGAAATCACCAACAGGGTTTTTCTCGATGT 418 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 340 AGATGAGGAGAAGCAAGTAATCGAAGATCACGAAATCACCAACAGGGTTTTTCTCGATGT 399 Query 419 TGATATTGATGGCCAACGCTTAGGCAGGATTGTTATCGGACTATATGGCACTGTTGTACC 478 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 400 TGATATTGACGGCCAACGCTTAGGCAGGATCGTTATCGGACTATATGGCACTGTTGTACC 459 Query 479 CAAAACTGTAGAAAATTTCAGGGCTTTATGCACAGGGGAGAAGGGTAAAACCTCAAGCGG 538 |||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| Sbjct 460 CAAAACTGTAGAAAATTTCAGGGCTTTATGCACAGGAGAGAAGGGGAAGACCTCAAGCGG 519 Query 539 AAAGCCTTTACATTATAAGGGAACACCATTTCATCGTATAATATCTGGATTTGTAATCCA 598 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 520 AAAGCCTTTACATTATAAGGGAACACCGTTTCATCGTATAATATCTGGATTTGTAATCCA 579 Query 599 AGGAGGAGACATTATCCATGGTGATGGAAAAAGTAGTGACTCAATCTATGGTGGAACCTT 658 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 580 AGGAGGAGACATTATCCATGGTGATGGAAAAAGTAGTGAGTCAATCTATGGTGGTACCTT 639 Query 659 TCCTGACGAAAATTTCAAGATACAGCATTCACACGCAGGTATGGTAGCAATGGCTAATAC 718 |||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||| Sbjct 640 TCCTGACGAAAATTTCAAGATAAAGCATTCACACGCAGGTGTTGTAGCGATGGCTAATAC 699 Query 719 AGGACCGGATTCTAATGGCTCGCAGTTCTTTATCACTACTGTTAAGGCTAGCTGGTTGGA 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700 AGGACCGGATTCTAATGGCTCGCAGTTCTTTATCACTACTGTTAAGGCTAGCTGGTTGGA 759 Query 779 AGGAGAACATGTGGTGTTGGGAAAGGTGATACAAGGAATGGACAATGTATTCGCCATTGA 838 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 760 AGGAGAACATGTGGTGTTTGGAAAGGTAATACAAGGAATGGACAATGTATTCGCCATTGA 819 Query 839 AGGTGGAGCTGGAACTTACAGTGGCAAACCCAGGAAGAAAGTTGTGATTGCTGATTCTGG 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 820 AGGTGGAGCTGGAACTTACAGTGGCAAACCCAGGAAGAAAGTTGTGATTGCTGATTCTGG 879 Query 899 AGAGATCCCTAAAGACAAATGGGATGAAGAGAGATGACAAAGACAAACCTAAGATACACA 958 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 880 AGAGATCCCTAAAGACAAATGGGATGAAGAGAGATGACCAAGACAA-CCTAAGATACACA 938 Query 959 GCACTACGACAAATCTGGTTCTGTTCCTGTGAGATTCT--GTCTCTGTATTTTCTTTCTA 1016 |||||| | || ||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 939 TCACTAC-A-AA-TCTGGTTCTGTTCCTGTGAGATTCTCTGTCTCTGTTTTTTCTTTCTA 995 Query 1017 TTTATAGTTTTGCACATGTGATGATCTGAATTCTGAACGCAATGTCACTGTAGTTAGTGT 1076 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 996 TTTATAGTTTTGCACATGTGATGATCTGAATTCTGAACACAATGCCAATGTAGTTAGTGT 1055 Query 1077 TTAAAGCTGGGCCTGGAAGCATCTGTAGCTTTTCACTTGAG--GTTTTTCTAGACTTTAT 1134 |||||| | |||||||||||||||||||||| | ||||||||||||||||| Sbjct 1056 TTAAAG--G-------AAGCATCTGTAGCTTTTCACTTAAAAAGTTTTTCTAGACTTTAT 1106 Query 1135 TTATATGATTTTTAGTTCACTCTACTTCAGTTATGTAGATATAT 1178 | ||||||||||||||||| |||||| ||||||||||||||||| Sbjct 1107 TGATATGATTTTTAGTTCAGTCTACTACAGTTATGTAGATATAT 1150 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44260706637 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5