BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35080.3 Length=1529 Score E Sequences producing significant alignments: (Bits) Value Ahg944390 jgi|Araly1|944390|scaffold_700619.1 1347 0.0 > Ahg944390 jgi|Araly1|944390|scaffold_700619.1 Length=1143 Score = 1347 bits (729), Expect = 0.0 Identities = 785/813 (97%), Gaps = 0/813 (0%) Strand=Plus/Plus Query 429 ACGTTATCTACTGGAACCGTTATACTAATCTCTGCAGTAGCTGTGCTTTTGCTTAACCCG 488 ||||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||| Sbjct 331 ACGTTATCTACTGGAACTGTCATACTAATCTCTGCAGTAGCTGCGCTTTTCCTTAACCCG 390 Query 489 CTTCTTGCACCACCTGCTTTCGCTAGCTTTCAAACTGCAGCTAAATCCGGTTGGCTAACA 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 CTTCTTGCACCACCTGCTTTCGCTAGCTTTCAAACTGCAGCTAAATCCGGTTGGCTAACA 450 Query 549 AGTGCGTGGACCGGTTTCCTTGCTGGTTGCTTGCACACGCTCTCAGGACCTGATCACCTC 608 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 451 AGTGCGTGGACTGGTTTCCTTGCTGGTTGCTTGCACACGCTCTCAGGACCTGATCACCTC 510 Query 609 GCTGCTTTAGCTCCGCTTTCGATCGGACGCAGCAAAATGGAAAGTGCTGCTGTTGGAGCT 668 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 511 GCTGCTTTGGCTCCGCTTTCAATCGGACGCAGCAAAATGGAAAGTGCTGCTGTTGGAGCT 570 Query 669 CTCTGGGGATGTGGGCATGATGCTGGTCAAGTCATCTTTGGTTTACTGTTTCTGCTACTT 728 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 571 CTCTGGGGATGTGGACACGACGCTGGTCAAGTCATCTTTGGTTTACTGTTTCTGCTACTT 630 Query 729 AAAGACCGGCTTCACATTGAAGTATTACAAACTTGGGGTACAAGAATTGTGGGATTGACT 788 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 631 AAAGACCGGCTCCACATCGAAGTATTACAAACTTGGGGTACAAGAATTGTGGGATTGACA 690 Query 789 CTTGTTATTATCGGTGCTATGGGAATCAAGGAAGCTTCTGAGATTCCAGAACCTTGTGTC 848 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 691 CTTGTTATCATCGGTGCTATGGGAATCAAGGAAGCTTCCGAGATTCCAGAACCTTGTGTT 750 Query 849 GCTTTAGAAACCGACATCAGCATGGTATCAACAGAGAAAGAAGCCTTACCACTGCCCAAA 908 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 751 GCCTTAGAAACCGACATCAGCATGGTATCAACAGAGAAAGAAGCCTTACCACTGCCCAAA 810 Query 909 AAGAAGAAGATCGGGTTTGCTACATTTGCAACTGGAGTGGTTCACGGGTTGCAACCGGAT 968 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811 AAGAAGAAGATCGGGTTTGCTACATTTGCAACTGGAGTGGTTCACGGGTTGCAACCGGAT 870 Query 969 GCTCTGATGATTGTTTTGCCTGCATTAGCTCTCCCATCACGGTTAGCAGGGTCTGCGTTT 1028 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 871 GCTCTGATGATTGTTTTGCCTGCATTAGCTCTGCCATCTCGGTTAGCAGGGTCTGCGTTT 930 Query 1029 TTGATAATGTTTCTGGTTGGGACAGTTATAGCGATGGGAAGTTACACAGCGTTTATTGGG 1088 |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 931 CTGATAATGTTTCTGGTTGGGACGGTTATCGCCATGGGAAGTTACACAGCGTTTATTGGG 990 Query 1089 TCTTGCAGTGAGGCTTTGAAAGAGAAAGTTCCAAGGATCACAGAGAAACTAACTTGGGTT 1148 ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 991 TCTTGTAGTGAGGCGTTGAAAGAGAAGGTTCCAAGGATCACAGAGAAACTAACTTGGGTT 1050 Query 1149 TCGTCACTTGTGGCTATTGGTCTTGGATTGGGAATTGTCATCAGCCCTTTCTTTGGTTTT 1208 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1051 TCGTCTCTTGTGGCTATTGGTCTTGGATTGGGAATTGTCATCAGCCCTTTCTTTGGTTTT 1110 Query 1209 AGCCTCTACTGAGAAAGTAAAAGCTTCTTCAGG 1241 ||||||||||||||||||||||||||| ||||| Sbjct 1111 AGCCTCTACTGAGAAAGTAAAAGCTTCGTCAGG 1143 Score = 472 bits (255), Expect = 5e-132 Identities = 307/332 (92%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 27 CTCGCCGAGAGAGAAGGAGACGCCATGGAAAGGcttcttcaaccatcttcttcttcttcc 86 |||||||||||||||||||||||||||||||||||||| |||||||||||||| || || Sbjct 1 CTCGCCGAGAGAGAAGGAGACGCCATGGAAAGGCTTCTGCAACCATCTTCTTCCTCGTCA 60 Query 87 tcaatttctccttccaaattcccttcacggacttctcctttccttccCCGTCTCCGCTCA 146 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 61 TCAATTTCTCCTTCCAAATTCCCTTCAAGGACTTCTCCTTTCCTTCCTCGTCTCCGCTCA 120 Query 147 TCGGGTCTGAG-CTTTGTCTCGACTCACCGGCCCGAGTCACGCCGAGTCAGCTCAATTTC 205 ||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 121 TCGAGTCT-AGGCTTTGTCTCGACTCATCGTCCCGAGTCACGCCGAGTCAGCTCAATTTC 179 Query 206 CTGCAACAGTTCCCAGATTCCGTCA-CTGTATACGCCTATAGGATCTAACACAACTAACA 264 ||||||||||| ||||| || ||| | ||||||| ||||||||||||||| ||||||| Sbjct 180 CTGCAACAGTTTCCAGAACCCATCAAC-GTATACGTCTATAGGATCTAACATGACTAACA 238 Query 265 ATTCCTTCAATGGGTCTCCCAAATCGGATGAATCGAAACCTAATCCCGGATTTCTCACAC 324 |||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||| Sbjct 239 ATTCCTTCAATGGGTCTCCCCAATCGGAAGAATCGAAACCGAATCCCGGATTGCTCACAC 298 Query 325 GGATCGCGACGTCGGCTTCTGAGCAGCGAAAG 356 ||||||||||| |||||||||||||||||||| Sbjct 299 GGATCGCGACGACGGCTTCTGAGCAGCGAAAG 330 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57249638235 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5