BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35110.3 Length=1483 Score E Sequences producing significant alignments: (Bits) Value Ahg353319 jgi|Araly1|353319|fgenesh1_pg.C_scaffold_7000492 1823 0.0 > Ahg353319 jgi|Araly1|353319|fgenesh1_pg.C_scaffold_7000492 Length=1161 Score = 1823 bits (987), Expect = 0.0 Identities = 1105/1163 (95%), Gaps = 4/1163 (0%) Strand=Plus/Plus Query 168 ATGGATTTCAATAGAAAAGCTCATCCAGATTGCGTATATGCGGATAATCCTTTCCATGAA 227 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGATTTCAATAGAAAAGCTCATCCGGATTGTGTATATGCGGATAATCCTTTCCATGAA 60 Query 228 TGTGCTTCAGCTTGTTTAGAGAAAATTGCTCAAGGCCATGTCAAGAAGAACACTAAGAAG 287 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 61 TGTGCTTCAGCTTGTTTAGAGAGAATTGCTCAAGGCCATGTCAAGAAGAACACTAAGAAG 120 Query 288 CAAAGTTCAAGGCTTCTTAGCTTCTCAGGGAGTTTCGGTAGGAAAAAGAAGGAGTCGA-A 346 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | Sbjct 121 CAAAGTTCAAGGCTTCTTAGCTTCTCAGGGAGTTTCGGTAGGAAAAAGAAGGAATC-ACA 179 Query 347 TTCACAACCGCCTACACCGCTATCCGCAAGGCCTTATCAAAACGGCAGAGGCGGTTTTGC 406 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 180 TTCACAACCGCCTTCACCGCTATCCGCAAGGCCTTACCAAAACGGCAGAGGCGGTTTTGC 239 Query 407 AAATGGTAATTCCCCAAAGGTTCATCATTCTGTAGCTCCACCTGCTTCCGTGAAGAAGAA 466 |||| ||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||| Sbjct 240 AAATAGTAATTCCCCAAAGGTTCATCATTCCGTAGCTCCATCTGTTTCTGTGAAGAAGAA 299 Query 467 GATTGTTTCTGAAACGAAAAATTCTTTCACTTCTTCATCATCCGGTGATCCGGATGATTT 526 ||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||| Sbjct 300 GATTGTTTCTGAATCGAATAAGTCTTTAACTTCTTCATCATCCGGTGACCCGGATGATTT 359 Query 527 CTTCAACCATAAACCAGAGAAGAAACCTTCTCAAACCATTCCCCTTTCATCAAACAATTT 586 ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 360 CTTCAACCATAAACCGGAGAAGAAACCTTCTCAAACCATTCCACTTTCCTCAAACAATTT 419 Query 587 GGTTGATCAAAGCAAAGTGGTATCACCTAAACCGGGAATACAAGAACACAATGGGAAGAT 646 ||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||| Sbjct 420 GGTTGATCAAAGCAAAGCCGTATCACCTAAACCTGGAATACAAGAACACGACGGGAAGAT 479 Query 647 TGGAGAAGGCGGCGAAACTAGACTCTTTAGTTTCCTAAGCCTTCCAAGATCGCCTGGAA- 705 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 480 TGGAGCAGGCGGCGAAACTAGACTCTTTAGTTTCCTAAGCCTTCCAAGATCGCATG-AAG 538 Query 706 AAGAGAGCAATGATGATTTTTCTGATGATGATGACGAAAACAACAATGAGATTGGTGTAG 765 |||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| Sbjct 539 AAGAGAGCAATGATGATTATACTGATGATGATGAAGAAAACAACAATGAGATTGGTGTAG 598 Query 766 AGCTCGATCTCGAATCAGTAATGTCTGACACTTTTGTCTCTGTCGGGAAATACCGAGTCA 825 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 599 AGCTCGATCTTGAATCAGTAATGTCTGACACTTTTGTCTCTGTCGGAAAATACCGAGTCA 658 Query 826 GATCGGGTTCATCCACTATACTAAGTGCTGTCATCGAAAAGCACGGAGACATTGCTCAAA 885 |||| ||||||||||| || ||||||||| |||||||||| ||||||||||||||||||| Sbjct 659 GATCCGGTTCATCCACAATCCTAAGTGCTATCATCGAAAAACACGGAGACATTGCTCAAA 718 Query 886 ACTGTAAGCTGGAATCGGATTCAATGCGATCACGTTACCTCGAGTGTTTATGCTCACTGA 945 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 719 ACTGTAAGCTGGAATCGGATTCAATGCGATCCCGTTACCTGGAGTGTTTATGCTCACTGA 778 Query 946 TGCAGGAACTTAGGTCAACCCCGGTAGGGCAGTTGAGCAAAGTCAAGGTCAAAGAGATGC 1005 |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 779 TGCAGGAACTCAGGTCAACCCCGGTAGGGCAGTTGAGCAAAATCAAAGTCAAAGAGATGC 838 Query 1006 TTGCGGTTCTCAAAGACTTGGAGTCTGTGAACATTGAAGTAGCTTGGCTACGTTCTGTTC 1065 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 839 TTGCGGTTCTCAAAGACTTGGAGTCTGTGAACATCGAAGTGGCTTGGCTACGTTCTGTTC 898 Query 1066 TTGAAGAGTTTGCGCAGTCTCAAGAAGATGTAGAAAATGAGAAAGAGAGGCATGATGGTT 1125 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 899 TTGAAGAGTTTGCGCAGTCTCTAGAAGATGCAGAAAATGAGAAAGAGAGGCATGATGGTT 958 Query 1126 TAGTGAAGGCTAAGAGAGAAGAGCTTGAGGCTCAAGAAACGGATTTGGTTAGGATGGAGA 1185 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TAGTGAAGGCTAAGAAAGAAGAGCTTGAGGCTCAAGAAACGGATTTGGTTAGGATGGAGA 1018 Query 1186 AGGAAGTGGTGGAAGTGAAGCGGCGGATTGAGGAGACGCGGGCTCAGATGGTTGAGATCG 1245 ||||||||| ||||| || || |||||||||||||||||||||||||||||| ||||| | Sbjct 1019 AGGAAGTGGCGGAAGCGAGGCTGCGGATTGAGGAGACGCGGGCTCAGATGGTCGAGATTG 1078 Query 1246 AAGCAGAACGGTTGAGGATGGAGAAAATGGGATTCAAAATGGAGAAATTTAAAGGGAAAT 1305 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 AAGCAGAACGGTCGAGGTTGGAGAAAATGGGATTCAAAATGGAGAAATTTAAAGGGAAAT 1138 Query 1306 CGTTTATAGATGAGCTTCTGTGA 1328 ||||||||||||||||||||||| Sbjct 1139 CGTTTATAGATGAGCTTCTGTGA 1161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55497486965 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5