BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35250.1 Length=1513 Score E Sequences producing significant alignments: (Bits) Value Ahg491124 jgi|Araly1|491124|fgenesh2_kg.7__557__AT4G35250.1 2039 0.0 > Ahg491124 jgi|Araly1|491124|fgenesh2_kg.7__557__AT4G35250.1 Length=1354 Score = 2039 bits (1104), Expect = 0.0 Identities = 1217/1272 (96%), Gaps = 6/1272 (0%) Strand=Plus/Plus Query 168 TCCTCCGGGCGTCTGTCTTGGCGACGTTCTCTCACACCGGAAAATACAATCCCGCTCTTC 227 |||||||| ||||| |||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 88 TCCTCCGGACGTCTCTCTTGGCGACGTTCTCTCACACCGGAAAATTCAATCTCGCTCTTC 147 Query 228 CCATCTTCCTCATCCTCATCCCTTAACCGGGAACGATCAATAGTAGTTCCGGTTACATGC 287 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 148 CCATCTTCCTCATCCTCATCCCTTAACCGGGAACGATTAATAGTAGTTCCGGTTACATGC 207 Query 288 AGTGCTGCAGCGGTTAATCTTGCTCCGGGGACACCAGTCCGACCCACGAGCATCTTGGTG 347 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 208 AGTGCGGCAGCGGTTAATCTTGCTCCGGGGACACCAGTCCGACCCACGAGTATCTTGGTG 267 Query 348 GTTGGAGCCACTGGAACTTTGGGAAGACAAATCGTCCGGAGAGCTTTAGATGAAGGGTAT 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 268 GTTGGAGCCACTGGAACTTTGGGAAGACAAATCGTCCGGAGAGCTTTAGATGAAGGTTAT 327 Query 408 GATGTTAGGTGTTTGGTCCGACCAAGACCAGCTCCCGCCGATTTCCTCCGTGATTGGGGC 467 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 328 GATGTCAGGTGTTTGGTCAGACCAAGACCAGCTCCCGCCGATTTCCTCCGTGATTGGGGC 387 Query 468 GCCACCGTAGTCAATGCGGATCTTAGTAAACCGGAGACAATTCCGGCGACTTTGGTCGGG 527 |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 388 GCCACCGTCGTCAATGCGGATCTTAGTAAACCAGAGACCATTCCAGCGACTTTGGTCGGA 447 Query 528 ATTCACACTGTAATTGATTGTGCCACGGGACGTCCTGAAGAACCTATCAAGACGGTAGAT 587 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 448 ATTCACACTGTAATTGATTGTGCCACGGGACGTCCTGAAGAACCCATCAAGACGGTAGAT 507 Query 588 TGGGAAGGAAAAGTTGCTCTGATACAATGTGCAAAGGCAATGGGGATTCAGAAATACGTC 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 508 TGGGAAGGAAAAGTTGCTCTGATACAATGTGCAAAGGCAATGGGGATTCAGAAATACGTC 567 Query 648 TTTTACTCAATCCACAATTGCGATAAGCATCCTGAGGTTCCTCTCATGGAGATTAAGTAC 707 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 568 TTTTACTCAATCCACAATTGCGATAAGCATCCCGAGGTTCCTCTCATGGAGATTAAGTAT 627 Query 708 TGCACTGAGAAGTTTCTTCAGGAATCTGGTTTAAACCACATCACCATTCGGTTATGTGGT 767 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 628 TGTACTGAGAAGTTTCTTCAGGAATCTGGTTTAAACCACATCACCATCCGGTTATGTGGT 687 Query 768 TTCATGCAAGGTCTTATTGGTCAATATGCAGTTCCAATTCTGGAGGAGAAATCGGTTTGG 827 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 688 TTCATGCAAGGTCTTATTGGTCAATATGCAGTTCCAATTTTGGAGGAAAAATCGGTTTGG 747 Query 828 GGAACAGATGCACCAACGCGTGTTGCTTACATGGACACACAGGATATTGCTAGGCTGACA 887 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 748 GGAACAGATGCACCAACGCGTATTGCTTACATGGACACACAGGATATTGCTAGGCTAACA 807 Query 888 CTTATAGCTTTACGTAATGAGAAGATCAATGGAAAACTTCTGACTTTCGCTGGCCCTCGT 947 |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 808 CTTATAGCTTTACGCAATGAGAAGATCAACGGAAAACTTCTGACATTCGCTGGCCCTCGT 867 Query 948 GCATGGACAACACAAGAAGTGATAACACTATGTGAGAGACTTGCTGGGCAAGATGCAAAT 1007 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 868 GCATGGACAACCCAGGAAGTAATAACACTATGTGAGAGACTTGCTGGGCAAGATGCAAAT 927 Query 1008 GTCACAACCGTTCCAGTTTCTGTATTGAGAGTCACGCGTCAGTTAACTCGGTTCTTTCAA 1067 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 928 GTCACAACCGTTCCAGTTTCTGTATTGAGAGTCACGCGTCAGTTAACTCGGTT-TTTCCA 986 Query 1068 -TGGACAAATGATGTCGCGGATAGACTGGCCTTCTCAGAGGTTCTCTCGAGTGACACGGT 1126 |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 987 GTGGACAAATGATGTCGCGGATAGACTGGCCTTCTCAGAGGTTCTTTCGAGCGACACGGT 1046 Query 1127 CTTCTCTGCTCCGATGACTGAGACTAATAGTCTACTAGGTGTGGATCAGAAGGATATGGT 1186 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1047 CTTCTCTGTTCCGATGACTGAGACTAATAGTCTACTAGGTGTGGATCAGAAGGACATGGT 1106 Query 1187 GACTCTAGAGAAGTACTTGCAGGATTACTTCAGCAACATATTGAAGAAACTAAAGGATCT 1246 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1107 GACTCTTGAAAAGTACTTGCAGGATTACTTCAGCAACATATTGAAGAAACTAAAGGATCT 1166 Query 1247 AAAGGCACAATCCAAGCAATCAGACATCTACTTCTGAGTTTCTGACCTTGTAGTGTCTTC 1306 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1167 AAAGGCACAATCCAAGCAATCAGACATCTACTTCTGAGTT-CTGACCTTGTGGTGTCTTG 1225 Query 1307 ATAAGATTCAACACTATTTATAAACTGCATTTGCAACCATACTGTGAGATTCGTTGTTGC 1366 |||||||||||||||||||| |||||||||||||| |||||||||||| | | ||||| | Sbjct 1226 ATAAGATTCAACACTATTTAAAAACTGCATTTGCATCCATACTGTGAGCTCCATTGTTTC 1285 Query 1367 TCTGTTCTTCAATGGTTATTGTGCTTCTTCTTGTAATTAAAGAGAATTATTGTAATGTAA 1426 ||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| Sbjct 1286 AATGTTCTTCAATGGCTACTGTGCTTCTTCTTGTAATTAAAGAGAATTAT---AATGTAA 1342 Query 1427 ATGTAGCTTGAG 1438 |||||||||||| Sbjct 1343 ATGTAGCTTGAG 1354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56640194315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5