BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35360.1 Length=1380 Score E Sequences producing significant alignments: (Bits) Value Ahg491111 jgi|Araly1|491111|fgenesh2_kg.7__544__AT4G35360.1 2180 0.0 Ahg480618 jgi|Araly1|480618|fgenesh2_kg.3__3319__AT2G17340.1 1251 0.0 Ahg931587 jgi|Araly1|931587|scaffold_304044.1 1164 0.0 > Ahg491111 jgi|Araly1|491111|fgenesh2_kg.7__544__AT4G35360.1 Length=1309 Score = 2180 bits (1180), Expect = 0.0 Identities = 1268/1311 (97%), Gaps = 4/1311 (0%) Strand=Plus/Plus Query 71 TCACACGTACGAACGAAGAATGGAGAGCGACTCCGAGATGGTAGCGTTGCCTCTGTTACC 130 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 TCACACGTACGAACGAAGAATGGAGAGCGACTCCGAGATGGTTGCGTTGCCTCTGTTACC 60 Query 131 GACTCCGATAGAATCGAACTACAGGGCTTGCACCATTCCTTATCGATTCCCTTCTGATAA 190 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GACGCCGATAGAATCAAACTACAGGGCTTGCACCATTCCTTATCGATTCCCTTCTGATAA 120 Query 191 TCCTAGAAAGGCTACTCCCACTGAGATCTCCTGGATCGATCTCTTCTCCAATTCCATCCC 250 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 TCCTAGAAAGGCTACTCCTACTGAGATCTCTTGGATCGATCTCTTCTCCAATTCCATCCC 180 Query 251 TTCTTTCAAGGAACGTGCAGAGAGCGATACAACCGTTCCAGATGCTCCTGTTCGAGCTGA 310 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 181 TTCTTTCAAGGAACGTGCAGAGAGTGACACAACCGTTCCAGATGCTCCTGTTCGAGCTGA 240 Query 311 AAAGTTTGCCAAAAGGTATGCGGAGATTCTTGAGGACCTGAAGAAAGATCCGGAGAGCCA 370 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 241 AAAATTTGCCAAAAGGTATGCGGAGATTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCA 300 Query 371 TGGTGGTCCACCGGATTGCATTCTTCTCTGCAGAATTCGTGAGCTGATACTAAGAGAATT 430 |||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 301 TGGTGGTCCACCAGATTGCATTCTTCTCTGCAGAATCCGTGAGCTAATACTAAGAGAATT 360 Query 431 GGGATTTAGGGACATATTTAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCAATATCACT 490 |||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct 361 GGGATTTAGGGACATATTCAAGAAAGTTAAGGACGACGAGAATGCAAAGGCTATATCACT 420 Query 491 ATTTCCTGAAGTTGTCCGTTTGAGTGATGCTATTAACGATGAAGGCAAGCGCATAGAGAA 550 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 421 ATTTCCAGAAGTTGTCCGTTTGAGTGATGCTATTGACGATGAAGGCAAGCGCATAGAGAA 480 Query 551 TCTGGTCAGAGGGATATTTGCTGGAAACATCTTTGATCTGGGTTCTGCACAGCTTGCTGA 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCTGGTCAGAGGGATATTTGCTGGAAACATCTTTGATCTGGGTTCTGCACAGCTTGCTGA 540 Query 611 GGTTTTCTCAAAAGACGGCATGTCCTTTTTGGCTAGCTGTCAGAACTTGGTTTCACGACC 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GGTTTTCTCAAAAGACGGCATGTCCTTTTTGGCTAGCTGTCAGAACTTGGTTTCACGACC 600 Query 671 ATGGGTCATTGATGACTTGGATAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAA 730 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 601 ATGGGTCATTGATGACTTGGATAACTTTCAAGCTAGATGGGTCAAAAAGCCTTGGAAGAA 660 Query 731 GGCTGTGATATTTGTCGATAATTCTGGTGCAGACATAATTTTGGGTATCTTGCCCTTTGC 790 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GGCTGTGATATTTGTCGATAATTCTGGTGCAGACATAATTTTGGGTATCTTGCCCTTTGT 720 Query 791 TAGAGAAATGCTACGTCTAGGAATGCAGGTTGTACTGGCTGCTAATGAGCTTCCGTCTAT 850 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| Sbjct 721 TAGAGAAATGCTACGTCGAGGAATGCAGGTTGTGCTGGCTGCTAATGAGCTTCCATCTAT 780 Query 851 CAACGATGTAACTTATATCGAGCTTGCAGAGATCTTGTCTAAGCTGAATGATGAAAATGG 910 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 781 CAACGATGTAACTTATATCGAGCTTGCAGAGATCTTGTCTAAGCTGAAGGATGAAAAAGG 840 Query 911 ACAATTGATGGGTGTTGATACCTCAAATCTTCTTATTGCAAATTCAGGGAATGACTTACC 970 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 841 ACAATTGATGGGTGTTGATACCTCGAATCTTCTTATTGCAAATTCAGGGAACGACTTACC 900 Query 971 GGTTATTGATCTTGCAAGAGTATCACAGGAGGTTGCGTACCTCTCAAGCGATGCAGACTT 1030 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 901 GGTTATTGATCTTGCAAGAGTATCACAGGAGGTTGCGTACCTCTCAACCGATGCAGACTT 960 Query 1031 GGTCATCTTAGAAGGCATGGGCCGTGGAATAGAGACAAACCTTTATGCTCAGTTCAAGTG 1090 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GGTCATCTTAGAAGGCATGGGCCGTGGAATAGAGACAAACCTTTATGCTCAGTTCAAGTG 1020 Query 1091 TGATTCCCTCAAGATCGGAATGGTGAAGCATCCAGAAGTAGCACAGTTTCTCGGAGGACG 1150 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAAGTAGCACAGTTTCTCGGAGGACG 1080 Query 1151 GCTTTATGACTGTGTCATCAAATACAATGAAGTTCAGATTTAATTATATTTCACA--CAC 1208 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 1081 GCTTTATGACTGTGTCATCAAATACAATGAAGTTCAGAGTTAATTATATTTCACAAACAC 1140 Query 1209 ATTTTTACTAAACCAGCCATTCAGTTTATTATATTAAAAACTGTTAGGCTTTGTAAGTTA 1268 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1141 ATTTTTACTGAACCAGCCATTCAGTTTATTATATGAAAAACTGTTAGGCTTTGTAAGTTA 1200 Query 1269 GAGATCCAATCTCTATCTCTGCATTCAGATGTAAGAATTGAAAACTCTTTCGACATTCTT 1328 |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1201 GAGATCCACTCTCTATCTCTACATTCAGATGTAAGAATTGAAAAATCTTTCGACATTCTT 1260 Query 1329 TATCAAACACACACAAAAAGCACCAATCTTTCTGATTGGACCTTATCTGGT 1379 ||| ||||||||| |||| |||||||||||||||||||| |||||| |||| Sbjct 1261 TATTAAACACACA-AAAA-GCACCAATCTTTCTGATTGGTCCTTATATGGT 1309 > Ahg480618 jgi|Araly1|480618|fgenesh2_kg.3__3319__AT2G17340.1 Length=1268 Score = 1251 bits (677), Expect = 0.0 Identities = 984/1131 (87%), Gaps = 25/1131 (2%) Strand=Plus/Plus Query 85 GAAGAATGGAGAGCGACTCCGAGATGGTAGCGTTGCCTCTGTTACCGACTCCGATAGAAT 144 ||| |||||||||||| || |||||||| |||| |||| |||||||| ||||||||| Sbjct 28 GAA-AATGGAGAGCGATTCAGAGATGGTTCCGTTTCCTCAATTACCGACGCCGATAGAAA 86 Query 145 CGAACTACAGGGCTTGCACCATTCCTTATC-GATTCCCTTCTGATAAT-CCTAGAAAGGC 202 | |||||||| ||||||||||||||||| | |||||||||||||| || || ||||| || Sbjct 87 CCAACTACAGAGCTTGCACCATTCCTTA-CAGATTCCCTTCTGATGATCCCAAGAAA-GC 144 Query 203 TACTCCCACTGAGATCTCCTGGATCGATC-TCTTCTCCAATTCCATCCCTTCTTTCAAGG 261 |||||| ||||| ||||| |||||| | | ||||| |||||||||| |||||||||||| Sbjct 145 TACTCCTACTGAAATCTCGTGGATC-AACGTCTTCGCCAATTCCATTCCTTCTTTCAAGA 203 Query 262 AACGTGCAGAGAGCGATACAACCGTTCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCCA 321 |||||||||||||||||||||| |||||||||||||||| | |||||||||| |||| || Sbjct 204 AACGTGCAGAGAGCGATACAACGGTTCCAGATGCTCCTGCTAGAGCTGAAAATTTTG-CA 262 Query 322 -AAAGGTATGC-GGAGATTCTTGAGGACCTGAAGAAAGATCCGGAGAGCCATGGTGGTCC 379 |||| ||||| ||| |||||||| ||| ||||||||||||| ||||| ||||| || || Sbjct 263 GAAAGATATGCGGGA-ATTCTTGAAGACTTGAAGAAAGATCCAGAGAGTCATGGCGGGCC 321 Query 380 ACCGGATTGCATTCTTCTCTGCAGAATTCGTGAGCTGA-TACTAAGAGAATTGGGATTTA 438 ||| ||| | |||||||| ||| || ||||||||| | |||| |||||||| ||||||| Sbjct 322 ACCAGATGGTATTCTTCTATGCCGACTTCGTGAGC-AAGTACTCAGAGAATTAGGATTTA 380 Query 439 GGGACATATTTAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCAATATCACTATTTCCTG 498 |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 381 GGGACATATTCAAGAAAGTGAAGGATGAGGAGAATGCAAAGGCTATATCACTATTTCCTG 440 Query 499 AAGTTGTCCGTTTGAGTGATGCTATT-AACGATGAAGGCAAGCGCATAGAGAATCTGGTC 557 |||||||| || |||||||||||||| || ||||| || || || |||||||| |||| Sbjct 441 AAGTTGTCAGTCTGAGTGATGCTATTGAA-GATGACGGAAAACGGTTAGAGAATTTGGTG 499 Query 558 AGAGGGATATTTGCTGGAAACATCTTTGATCTGGGTTCTGCACAGCTTGCTGAGGTTTTC 617 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 500 AGAGGGATATTTGCTGGAAACATCTTTGATCTGGGTTCTGCACAGCTTGCTGAAGTTTTC 559 Query 618 TCAAAAGACGGCATGTCCTTT-TTGGCTAGCTGTCAGAACTTGGTTTCACGACCATGGGT 676 |||| || || ||||| ||| |||||||||||||| || |||||| ||||||||||||| Sbjct 560 TCAAGGGATGGTATGTC-TTTCTTGGCTAGCTGTCAAAATTTGGTTCCACGACCATGGGT 618 Query 677 CATTGATGACTTGGATAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGT 736 ||||||||||||||| ||||| ||||| | |||| |||| ||| ||||||||||||| || Sbjct 619 CATTGATGACTTGGAAAACTTCCAAGCCAAATGGATCAACAAGTCTTGGAAGAAGGCAGT 678 Query 737 GATATTTGTCGATAATTCTGGTGCAGACATAATTTTGGGTATCTTGCCCTTTGCTAGAGA 796 ||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 679 GATTTTTGTTGATAATTCTGGTGCAGACATAATTTTGGGTATTTTGCCGTTTGCAAGAGA 738 Query 797 AATGCTACGTCTAGGAA-TGCAGGTTGTACTGGCTGCTAATGAGCTTCCGTCTATCAACG 855 |||| |||| ||||| | |||||||| |||||||||||||| || || |||||||| | Sbjct 739 GTTGCTCCGTCGAGGAACT-CAGGTTGTGCTGGCTGCTAATGAACTGCCATCTATCAATG 797 Query 856 ATGTAACTTATATCGAGCTTGCAGAGATCTTGTCTA-AGCTGAATGATGAAAATGGACAA 914 | |||| |||| ||||||| ||||||||||| | | || |||| ||||||||||| ||| Sbjct 798 ACATAACATATACCGAGCTTACAGAGATCTTGAC-ACAGTTGAAGGATGAAAATGGCCAA 856 Query 915 TTGATGGGTGTTGATACCTCAAATCTTCTTATTGCAAATTCAGGGAATGACTTACCGGTT 974 ||| | || |||||||| || || ||||| ||||||||||| |||||||||||||| ||| Sbjct 857 TTGCTAGGCGTTGATACTTCGAAGCTTCTGATTGCAAATTCGGGGAATGACTTACCAGTT 916 Query 975 ATTGATCT-TGCAAGAGTATCACAGGAGGTTGCGTACCTCTCAAGC-GATGCAGACTTGG 1032 || ||||| | ||||||||||||||||| |||| || || ||| | ||||| ||||| | Sbjct 917 ATCGATCTCT-CAAGAGTATCACAGGAGCTTGCTTATCTTTCAT-CTGATGCCGACTTAG 974 Query 1033 TCATCTTAGAAGGCATGGGCCGTGGAATAGAGACAAACCTTTATGCTCAGTTCAAGTGTG 1092 ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 975 TCATCGTAGAAGGCATGGGTCGTGGAATTGAGACAAACCTTTATGCTCAGTTCAAGTGTG 1034 Query 1093 ATTCCCTCAAGATCGGAATGGTGAAGCATCCAGAAGTAGCACAGTTTCTCGGAGGACGGC 1152 |||| || ||||| |||||||||||||||| ||||||||| |||||||||||||||| | Sbjct 1035 ATTCTCTGAAGATTGGAATGGTGAAGCATCTTGAAGTAGCAGAGTTTCTCGGAGGACGAC 1094 Query 1153 TTTATGACTGTGTCATCAAATACAATGAAGTTCAGATTTAATTATATTTCA 1203 ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1095 TTTATGACTGTGTTTTCAAATACAATGAAGTTCAGAGCTAATTATATTTCA 1145 > Ahg931587 jgi|Araly1|931587|scaffold_304044.1 Length=1126 Score = 1164 bits (630), Expect = 0.0 Identities = 959/1115 (86%), Gaps = 33/1115 (3%) Strand=Plus/Plus Query 105 GAGATGGTAGCGTTGCCTCTGTTACCGACTCCGATAGAATCGAACTACAGGGCTTGCACC 164 |||||| | |||| |||||||||||||| ||||| ||| | |||||||| || |||||| Sbjct 18 GAGATGATTCCGTTTCCTCTGTTACCGACGCCGATTGAAACCAACTACAGAGCCTGCACC 77 Query 165 ATTCCTTATCGATTCCCTTCTGATAATCCT--AGAAAGGCTACTCCCACTGAGATCTCCT 222 ||||||||| ||||||||| ||||||| || ||||| || ||||| ||||| ||||| | Sbjct 78 ATTCCTTATAGATTCCCTTGTGATAAT-CTGAAGAAA-GCCACTCCTACTGAAATCTCGT 135 Query 223 GGATCGATC-TCTTCTCCAATTCCATCCCTTCTTTCAAGGAACGTGCAGAGAGCGATA-C 280 ||||| | | ||||| | |||||||||||||| |||||| |||| ||||||||||||| | Sbjct 136 GGATC-AACGTCTTCGCTAATTCCATCCCTTCGTTCAAGAAACGAGCAGAGAGCGATATC 194 Query 281 AACCGTTCCAGATGCTCCTGTTCGAGCTGAAAA-GTTTGCCA-AAAGGTATGC-GGAGAT 337 || |||||||||||||||| ||||| |||| |||| || |||| ||||| ||| || Sbjct 195 -ACTGTTCCAGATGCTCCTGCGAGAGCT-AAAATATTTG-CAGAAAGATATGCGGGA-AT 250 Query 338 TCTTGAGGACCT-GAAGAAAGATCCGGAGAGCCATGGTGGTCCACCGGATTGCATTCTTC 396 |||||| || | |||||||||||| |||||| |||| || ||||| ||| ||||| ||| Sbjct 251 TCTTGAAGA-TTGGAAGAAAGATCCAGAGAGCAATGGCGGGCCACCAGATGGCATTATTC 309 Query 397 TCTGCAGAATTCGTGAGC-TGATACTAAGAGAATTGGGATTTAGGGACATATTTAAGAAA 455 || || || ||||||||| | |||| ||||| || ||||||| ||||||||| |||||| Sbjct 310 TCGGCCGAGTTCGTGAGCAT-TTACTCAGAGAGTTAGGATTTAAGGACATATTCAAGAAA 368 Query 456 GTTAAGGATGAGGAGAATGCAAAGGCAATATCACTATTTCCTGAAGTTGTCCGTTTGAGT 515 || |||||||| |||||||||||||| |||||||||||||||||||||||| || ||||| Sbjct 369 GTCAAGGATGAAGAGAATGCAAAGGCTATATCACTATTTCCTGAAGTTGTCAGTCTGAGT 428 Query 516 GATGCTATT-AACGATGAAGGCAAGCGCATAGAGAATCTGGTCAGAGGGATATTTGCTGG 574 ||||||||| || ||||| || || || |||||||| |||| ||||||||||||||||| Sbjct 429 GATGCTATTGAA-GATGACGGAAAACGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGG 487 Query 575 AAACATCTTTGATCTGGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAAAGACGGCATGTC 634 ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| | Sbjct 488 AAACATCTTTGATCTAGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAGGGATGGCATAT- 546 Query 635 CTTT-TTGGCTAGCTGTCAGAACTTGGTTTCACGACCATGGGTCATTGATGACTTGGATA 693 |||| ||||||| |||||| |||||||| ||||||| |||||||||||||||||||| | Sbjct 547 CTTTCTTGGCTACCTGTCAAAACTTGGTACCACGACCTTGGGTCATTGATGACTTGGACA 606 Query 694 ACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGTGATATTTGTCGATAATT 753 |||| ||||| | |||| |||||||||||||||||||||| ||||||||||| ||||||| Sbjct 607 ACTTCCAAGCCAAATGGATCAAGAAGCCTTGGAAGAAGGCAGTGATATTTGTTGATAATT 666 Query 754 CTGGTGCAGACATAATTTTGGGTATCTTGCCCTTTGCTAGAGAAATGCTACGTCTAGGAA 813 ||||||||||||||||||||||||| ||||| ||||| ||||| |||| |||| ||||| Sbjct 667 CTGGTGCAGACATAATTTTGGGTATTTTGCCGTTTGCAAGAGAGCTGCTCCGTCGAGGAA 726 Query 814 -TGCAGGTTGTACTGGCTGCTAATGAGCTTCC-GTCTATCAACGATGTAACTTATATCGA 871 | ||||| || ||||||||||| ||||| || | |||||||||||||||| |||| ||| Sbjct 727 CT-CAGGTGGTGCTGGCTGCTAACGAGCTGCCAG-CTATCAACGATGTAACATATACCGA 784 Query 872 GCTTGCAGAGATCT-TGTCTAAGCTGAATGATGAAAATGGACAATTGATGGGTGTTGATA 930 |||| |||| || | |||| || |||| |||| |||||| |||||||| |||||||||| Sbjct 785 GCTTACAGATAT-TGTGTCGCAGTTGAAGGATGGAAATGGCCAATTGATAGGTGTTGATA 843 Query 931 CCTCAAATCTTCTTATTGCAAATTCAGGGAATGACTTACCGGTTATTGATCT-TGCAAGA 989 | ||||| ||||| |||||||||||||||||||| ||| ||||||| ||||| | ||||| Sbjct 844 CTTCAAAGCTTCTGATTGCAAATTCAGGGAATGATTTAGCGGTTATCGATCTCT-CAAGA 902 Query 990 GTATCACAGGAGGTTGCGTACCTCTCAAGC-GATGCAGACTTGGTCATCTTAGAAGGCAT 1048 |||||||| ||| |||| ||||| || | | ||||||||||| |||||| |||||||||| Sbjct 903 GTATCACATGAGCTTGCTTACCTTTC-ATCTGATGCAGACTTAGTCATCCTAGAAGGCAT 961 Query 1049 GGGCCGTGGAATAGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCCCTCAAGATCGG 1108 ||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 962 GGGTCGTGGGATCGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTCAAGATCGG 1021 Query 1109 AATGGTGAAGCATCCAGAAGTAGCACAGTTTCTCGGAGGACGGCTTTATGACTGTGTCAT 1168 ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| | Sbjct 1022 AATGGTGAAGCATGTTGAAGTAGCACAGTTTCTCGGAGGACGACTTTACGACTGTGTCTT 1081 Query 1169 CAAATACAATGAAGTTCAGATTTAATTATATTTCA 1203 ||||||||||||||||||| ||||| | |||||| Sbjct 1082 TAAATACAATGAAGTTCAGAGTTAAT-ACATTTCA 1115 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51656552535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5