BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35440.2
Length=2661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888526 jgi|Araly1|888526|Al_scaffold_0007_512 3360 0.0
> Ahg888526 jgi|Araly1|888526|Al_scaffold_0007_512
Length=2148
Score = 3360 bits (1819), Expect = 0.0
Identities = 2014/2106 (96%), Gaps = 21/2106 (1%)
Strand=Plus/Plus
Query 31 ATGGCAGCCACGCTTCCACTCTGTGCTGCCCTCCGATCTCCCGTCTCTTCCCGGAGATTC 90
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCCACGCTTCCACTCTGTGCTGCTCTCCGATCTCCCGTCTCTTCCCGGAGATTC 60
Query 91 GCTCCAATTCACAAAACCGACGTTCCTTTTCAGT-TCAATGTCGTCCTTTCA-C-----C 143
| || |||||||||||| | | || | |||||| | |||||| |||||||| | |
Sbjct 61 TCGCCGATTCACAAAACCAATGCTCATCTTCAGTAT-AATGTCTTCCTTTCACCGTTGAC 119
Query 144 GT-----TT-TTCGGTTCCGTCGCTATTGGCGGTAGAATTTTCCCGCGTTTACCGGCGGC 197
|| || |||||||||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 120 GTCACCATTGTTCGGTTCCGTCGCTATTCGCGGCAGAATTTTACCGCGTTTACCGGCGGC 179
Query 198 GAAGCAGGAGACTGAT---CAGGATGAGGTTGGATTTGATCAGCAGCCGTCTCAGGAGCT 254
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAAGCAGGAGATTGATCAGCAGGATGAGGTTGGATTTGATCAGCAGCCGTCTCAGGAGCT 239
Query 255 TGCGATAGCGTCGGCTTGTTTGGTTGGTGTTCTCACTGGAGTTAGTGTGGTTCTATTCAA 314
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TACGATAGCGTCGGCGTGTTTGGTTGGTGTTCTCACTGGAGTTAGTGTGGTTCTATTCAA 299
Query 315 CAACTGTGTTCACTTGCTTCGAGACTTT-TCCTGGGATGGGATTCCTGATCGTGGAGCTT 373
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 300 CAACTGTGTTCACTTGCTTCGAGA-TTTCTCCTGGGATGGGATTCCTGATCGTGGAGCTT 358
Query 374 CGTGGCTTAGAGAGGCACCGATCGGTTCCAATTGGTTGCGTGTTATCCTTGTTCCGACTA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CGTGGCTTAGAGAGGCACCGATCGGTTCCAATTGGTTGCGTGTTATCCTTGTTCCGACTA 418
Query 434 TCGGCGGTTTGGTGGTGAGCATCCTCAATCAGCTTCGAGAATCTGCTGGAAAATCTA-CT 492
|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| | |
Sbjct 419 TCGGCGGTTTGGTGGTGAGCGTCCTCAATCAGCTTCGAGAATCTGCCGGAGAATCCAGC- 477
Query 493 GGAGATTCTCATTCTAGTCTCGATCGCGTAAAGGCAGTGTTGCGTCCTTTCCTTAAGACT 552
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGAGATTCTGATTCTAGTCTCGATCGCGTAAAGGCAGTGTTGCGTCCTTTCCTTAAGACT 537
Query 553 GTTGCCGCATGTGTGACGCTTGGGACTGGAAATTCGCTGGGGCCGGAAGGTCCAAGTGTT 612
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 GTTGCCGCATGTGTGACGCTTGGGACTGGAAATTCGCTGGGGCCGGAAGGTCCTAGTGTT 597
Query 613 GAAATTGGAGCGTCAATCGCTAAAGGTGTGAATTCTCTGTTCAATAAAAGTCCTCAGACT 672
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 GAAATTGGCGCGTCAATCGCTAAAGGAGTGAATTCTCTGTTCAATAAAAGTCCTCAGACT 657
Query 673 GGCTTCTCACTTCTTGCCGCTGGCTCAGCTGCTGGCATTTCCTCTGGGTTCAATGCAGCT 732
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 658 GGCTTCTCACTTCTTGCTGCTGGCTCAGCGGCTGGAATTTCCTCTGGGTTCAATGCAGCT 717
Query 733 GTGGCTGGATGCTTCTTTGCAGTTGAATCCGTTTTGTGGCCTTCTTCATCAACTGATTCA 792
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 GTTGCTGGATGCTTCTTTGCAGTTGAATCCGTTTTGTGGCCTTCTTCATCTACTGATTCA 777
Query 793 TCAACTTCACTTCCAAACACAACTTCTATGGTTATTCTTAGTGCTGTTACTGCTTCTGTG 852
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCAACATCACTTCCAAACACAACTTCTATGGTTATTCTTAGTGCTGTTACTGCTTCTGTG 837
Query 853 GTTTCCGAAATCGGTCTCGGCTCTGAACCTGCGTTTAAGGTTCCTGACTATGACTTCCGC 912
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTGTCGGAAATCGGTCTCGGCTCTGAACCTGCGTTTAAGGTTCCTGACTATGACTTCCGC 897
Query 913 TCTCCTGGAGAACTTCCACTCTATCTTTTATTGGGCGCTCTGTGTGGCTTGGTCTCGTTG 972
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 TCTCCTGGAGAACTTCCACTCTATCTTTTATTGGGCGCTCTGTGTGGCCTGGTCTCGTTG 957
Query 973 GCATTATCTCGATGTACATCATCCATGACATCTGCTGTTGACAGTCTTAACAAGGATGCT 1032
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 958 GCATTATCTCGATGTACATCATCCATGACATCTGCTGTTGACAGTCTCAACAAGGATGTT 1017
Query 1033 GGGATACCAAAGGCTGTATTTCCTGTAATGGGTGGATTAAGTGTTGGTATCATAGCTTTG 1092
||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||
Sbjct 1018 GGGATACCAAAGGCTGTATTTCCTGTAGTGGGTGGCTTAACTGTTGGAATCATAGCTTTG 1077
Query 1093 GTATACCCTGAAGTATTATACTGGGGTTTTCAGAATGTGGATATTTTGTTGGAGAAACGT 1152
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 GTATACCCTGAAGTCTTATATTGGGGTTTTCAGAACGTGGATATTTTGTTGGAGAAACGT 1137
Query 1153 CCATTTGTGAAGGGTCTTTCAGCTGATCTTTTGCTTCAGCTGGTAGCGGTCAAGATAGCT 1212
|||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 CCATTTGTAAAGGGCCTGTCAGCTGATCTTTTGCTTCAGCTGGTAGCGGTCAAAATAGCT 1197
Query 1213 GCAACCGCATGGTGTCGGGCTTCTGGACTTGTCGGTGGATACTATGCTCCTTCTCTCTTT 1272
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GCAACTGCATGGTGTCGGGCTTCTGGACTTGTCGGTGGATACTATGCTCCTTCTCTCTTT 1257
Query 1273 ATTGGCGGGGCAGCAGGAATGGCCTATGGAAAGTTTATTGGACTTGCTTTGGCTCAGAAC 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATTGGCGGGGCAGCAGGAATGGCCTATGGAAAGTTTATTGGACTTGCTTTGGCTCAGAAC 1317
Query 1333 CCTGATTTCAATCTCTCTATCTTGGAAGTGGCATCTCCACAAGCTTATGGTCTGGTTGGA 1392
||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 CCTGAAATCAATCTCTCTATCCTGGAAGTAGCATCTCCACAAGCTTATGGTCTGGTTGGA 1377
Query 1393 ATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCAGTACTACTGCTATTT 1452
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 ATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCGGTACTACTGCTATTT 1437
Query 1453 GAACTTACACAGGATTATCGTATAGTGTTACCTCTACTGGGAGCTGTAGGCATGTCTTCA 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GAACTTACACAGGATTATCGTATAGTGTTACCTCTACTGGGAGCTGTAGGCATGTCTTCA 1497
Query 1513 TGGATTACATCTGGACAATcaaagagacaagaaactagagaaacaaaagaaactaggaaa 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TGGATTACATCTGGACAATCAAAGAGACAAGAAACTAGAGAAACAAAAGAAACTAGGAAA 1557
Query 1573 agaaagagccaagaagCTGTACAGTCTCTGACGTCATCTGATGATGAATCATCAACGAAT 1632
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1558 AGAAAGAACCAAGAAGCTGTACAGTCTCTGACGTCATCTGATGATGGATTATCAACGAAT 1617
Query 1633 AACCTTTGTGAAGTTGAAAGTTCTCTTTGCCTTGATGATTCTCTCAACCAATCTGAGGAG 1692
||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 1618 AACCTTTGTGAAGTTGAAAGTTCTCTTTGCCTTGATGATTCACTCAACCAAGCTCAGGAG 1677
Query 1693 CTGCCGAAGAGTATTTTTGTTTCAGAAGCCATGCGAACAAGATTTGCGACAGTTATGATG 1752
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1678 CTGCCGAAGAGTATATTTGTTTCAGAAGCCATGCGAACAAGATTTGCCACAGTTATGATG 1737
Query 1753 AGCACTTCTTTGGAAGAGGCATTAACTCGTATGCTGATAGAGAAACAATCCTGCGCCTTG 1812
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 AGCACTTCTTTGGAAGAGACATTAACTCGTATGCTGATAGAGAAACAATCCTGCGCCTTG 1797
Query 1813 ATTGTTGATCCTGACAATATCTTTCTCGGTATACTTACACTTTCAGACATTCAGGAATTC 1872
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 ATTGTTGACCCTGACAATATCTTTCTCGGTATACTTACACTTTCAGACATTCAGGAATTC 1857
Query 1873 AGCAAAGCAAGAAAAGAAGGAAATAATAGACCCAAGGATATTTTTGTTAATGACATCTGT 1932
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 1858 AGCAAAGCAAGAAAAGAAGGAAATAAAAGACCCAAGGATATTTTTGTTAATGATATATGT 1917
Query 1933 TCGAGGAGTGGAGGAAAATGTAAAGTGCCATGGACTGTTACACCTGATATGGATCTTCTC 1992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 TCGAGGAGTGGAGGAAAATGTAAAGTGCCATGGACTGTTACACCTGATATGGATCTTCTC 1977
Query 1993 GCTGCCCAAACAATCATGAACAAGCATGAACTTTCTCATGTTGCAGTCGTTTCAGGCAGC 2052
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 1978 GCTGCCCAAACAATCATGAACAAGCATGAAATTTCCCATGTTGCAGTTGTTTCAGGCAGC 2037
Query 2053 ATTGATGCTCCCAGAATACACCCTGTTGGGGTCCTGGATAGAGAATGTATCACTCTAACA 2112
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2038 ATTGATGCTCGCAGAATACACCCTGTTGGGGTCCTAGATAGAGAATGTATCACTCTAACG 2097
Query 2113 CGCAGG 2118
||||||
Sbjct 2098 CGCAGG 2103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100367795575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5