BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35510.1
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491095 jgi|Araly1|491095|fgenesh2_kg.7__528__AT4G35510.1 2047 0.0
> Ahg491095 jgi|Araly1|491095|fgenesh2_kg.7__528__AT4G35510.1
Length=1439
Score = 2047 bits (1108), Expect = 0.0
Identities = 1364/1478 (92%), Gaps = 56/1478 (4%)
Strand=Plus/Plus
Query 13 AATCGGAACAAAAttctcttgtcttcttcatcctcctcctcctcctttctctctgcaaac 72
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AATTGGAACAAAATTCTCTTGTCTTCTTCA---TCCTCCTCCTCCTTTCTCTCTGCAAAC 57
Query 73 cctaatttcctttctcctaaactctctcatcttcctctttctctctcttttcttcctAAA 132
|||||||| | || | | |||||||||||||| ||||||||||||||||| |||
Sbjct 58 CCTAATTT-C---CT--T----T-TCTCATCTTCCTCTCTCTCTCTCTTTTCTTCCCAAA 106
Query 133 TGATAAGGTAACTTCAAAACTACGACAATTCAACACTCTAAAGGACACGCCAAGATTTAG 192
||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
Sbjct 107 TGATAAGGTAACTTCAAAACTACGACAATTCAATACTCT-AAGGAAACGCCAAGATTTGG 165
Query 193 GTTTTTAGCTTGATTCAAAAATGGAGACGAATCCGTGTGACATGAATCAGCTCGATTCCG 252
||||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 166 GTTTTTAGC-TGATT-TATAATGGAGACGAATCCGTCTGACATGAATCAGCTCGATTCCG 223
Query 253 ATTCGCATCTCCCTCCTCGAAAACGATTACTTGCTGGATTCAAGAAATTTAACTCCAACG 312
|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 224 ATTCGCATCTCCCTCCTCGAAAGCGATTACTTGCTGGATTCAAGAAACTAAACTCCAACG 283
Query 313 GCATTAATGGATCTTCTCCTTCAGATTTCGCTTCTTCTTCCTCTACTTCAAACTCAAACG 372
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GC---GATGGATCTTTTCCTTCAGATTTCGCTTCTTCTTCCTCTACTTCAAACTCAAACG 340
Query 373 GATCTTCCTCTGCTTCCACCAATGTTCAGACCCATCTCGGCAACTTGTTATCTTCTCC-T 431
|||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| || |
Sbjct 341 GATCTTCCTCTGCTTCCACCCATGTTCAGACCCATCTCGACAACTTGCTATCTTC-CCGT 399
Query 432 TTCAACAATGACCAGTCACCTGAAGAGCTCGTGGAGGCAACGAGATCTGCAGCTGCTTTA 491
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 400 TTCAACAATGACCAGTCACCGGAAGAGCTCGTGGAGGCAACGAGATCTGCAGCTGCTTTA 459
Query 492 GCGGTTAAAGCTGCAAAGGCTGCGAGAGCTATTGCTAACGAGAAGGCTTTGATTTCCGCT 551
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 460 GCGGTTAAAGCTGCAAAGGCGGCCAGAGCTATTGCGAACGAGAAGGCTTTGATTTCCGCA 519
Query 552 AAGGCGATTGCTGCGGCTAAGAGGGCATTGGAATTGGTTGATTCTTTTCCTAAAGAAGCA 611
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 520 AAGGCGATTGCTGCGGCTAAGAGGGCATTGGAATTGGTTGATTCTTTCCCTAAAGAAGCA 579
Query 612 ATGGCTGATTGCAAGGAGAGGTCTCCTAGGAAGAACAAGCAGAAGAAACATGTCCCCGTC 671
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 580 ATGGCTGATTGCAAGGAGAGGTCTCCTAAGAAGAACAAGCAGAAGAAACATGTCCCCGTC 639
Query 672 GAGCTCTTGTATTCAAAGGGGCAGCTAAGAGACGAGGAAGATGATTTAGCGCGTAGGTTG 731
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 640 GAGCTCTTGTATTCAAAGGGACAGCTAAGAGACGAGGACGATGATTTAGCGCGTAGGTTG 699
Query 732 CATCGAGCTATAGACAATACGTCGTATCCTAGAGTCTTGAGAACTAGC--G--A---G-G 783
||||||||||||| |||||| | | |||||||||||||||||| || | | | |
Sbjct 700 CATCGAGCTATAGGCAATACAT---ACCCTAGAGTCTTGAGAACTTGCTCGGGATTCGAG 756
Query 784 -AGAATGGTCAGAGATACAAGAAGCAGAAGAAGAACAAGAGCGTAGTTGAAGGTGGGAGT 842
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 757 GAGAATGGTCAGAGATACAAGAAGCAGAAGAAGAACAAGACCGTAGTTGAAGGTGGGAGT 816
Query 843 AGTAGTATTATAGTGACCGGTTCTATGAAAGACATTGCTGGAGTTGTGGATTCAGACAGC 902
||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 817 AGTAGTATTGTAGTGACCGGTTCTATGAATGACATTGCTGGAGTCGTGGATTCAGACAGC 876
Query 903 TCCTATGAAGGATTAGAGATAGCTAGATCAAACAGGGATGAAGCGGATTCGATG-CTGAT 961
|| ||||||||||||||||||||||||||||||||| |||||| |||||| | | |||||
Sbjct 877 TCGTATGAAGGATTAGAGATAGCTAGATCAAACAGGAATGAAGTGGATTCAA-GACTGAT 935
Query 962 GATGGAGAAATCAGGGGAAGAAAGCAACTCATTGGTTAAAAGAAGAGGAAGAGT-G--AA 1018
|||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 936 GATGGAGAAAGCAGAGGAAGAAAATAACTCATTGGTTAAAAGAAGAGGAAGAGTAGTGAA 995
Query 1019 GCTAAAGAAGCTTCCTTTGAGCATTTGTAATTCTAGAAATCAAGAAAACGGAACTTCCTC 1078
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 996 GCTAAAGAAGCTTCCTTTGAGCATTTGTAATTCTAGAAATCAAGAAAATGGAACTTCCCC 1055
Query 1079 CGCGTCTCCATTACCGGTGGCTCAGCCGCAGGAAGACGGTGGTGCGATCACGGTCATAGC 1138
||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |
Sbjct 1056 CGCGTCTCCATTACCGGTGGCTCAGCCGCAGGAGGACAGTGGTGCGATAACGGTCATACC 1115
Query 1139 AGGATCGTCGTCTTGGAAATGCCAGGACATAAAGGCACCAGAATGTGTGAAGCAGAACAA 1198
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1116 AGGATCGTCGTCTTGGAAATGCCAGGACCTAAAGGCACCAGAATGCGTGAAGCAGAACAA 1175
Query 1199 AGCCGTACGGTCATAGTGACTACCATTGTCTACAGAAAAAATGACTCtttttttCAAGAT 1258
|||||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct 1176 AGCCGTACGGTCATAGTG--T-C--T-----ACAGAAAAAATGACTCTTTTTTTCAAGAT 1225
Query 1259 TTGGTCAGCATTACCATTTTCGGTAGAAGAATCACATTGTTGTTTCCTTTTTTGGATGTG 1318
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1226 TTGGTCAGCATTGCCATTTTCAGTAGAAGAATCACATTGTTGTTTCCTTTTTTGGGTGTG 1285
Query 1319 TTTTAAAATTTATGTTATATATTGTTAAATATATACATAATACATATATGGGTTTATTCG 1378
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1286 TTTGAA--TTTATGTTATATATTGTTAAATATATACATAATACATATATGGGTTTATTTG 1343
Query 1379 CAGTTG---TTGTGTAGAAGAAAGTTTGATATTTTGGATTCATAGATGCAATAAAGTGAT 1435
|| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1344 CAATTGCAGTTGTGTAGAAGAAAGTTTGATATTTTGGATTAATAGATGCAATAAAGTGAT 1403
Query 1436 GTACTTGTTTTTTGTTGAATGGTAAGTTTTTTCTTCAT 1473
||| || |||||||||||||| ||||||||||||||||
Sbjct 1404 GTA-TT-TTTTTTGTTGAATGATAAGTTTTTTCTTCAT 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55154674760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5