BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35720.1
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491076 jgi|Araly1|491076|fgenesh2_kg.7__509__AT4G35720.1 1803 0.0
> Ahg491076 jgi|Araly1|491076|fgenesh2_kg.7__509__AT4G35720.1
Length=1172
Score = 1803 bits (976), Expect = 0.0
Identities = 1132/1201 (94%), Gaps = 35/1201 (3%)
Strand=Plus/Plus
Query 1 ATGTATATGGCCTCACTGTCTCCGAGACTCCACAAAGCGTACAAAGCTAGATGTGTTAGC 60
||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTATATGTCCTCATTGTCTCCGAGACTCCACAAAGCATACAAAGCTAGATGTGTTAGC 60
Query 61 TTACCGGTTCGGTCTCATCCGAGTGTTAGGAGGATTCAAGAAGTGGTCTCCAAGGTTAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTACCGGTTCGGTCTCATCCGAGTGTTAGGAGGATTCAAGAAGTGGTCTCCAAGGTTAGA 120
Query 121 GCTTTGGGGTCTTCTTCGTTAGACTCGAGGACAATAGTCCGTGACAGTCTCTCTGGTCTC 180
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 121 GCTTTGGGGTCTTCTTCGTTAGACTCGAGGACGATGGTCCGTGACGGTCTCTCTGGTCTC 180
Query 181 ACCGAGCTTTACAGATGTTTAAGTGAAGATCTCTTCAAGTCTTCTTCTGAAACTCAACAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCGAGCTTTACAGATGTTTAAGTGAAGATCTCTTCAAGTCTTCTTCTGAAACTCAACAA 240
Query 241 GCCCTTCTTAATGGTGATGGTTTGATGGAAGAGCTTCTTGAAGTATCACTGAAATACTTA 300
|| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTCTTCTTAACGGTGACGGCTTGATGGAAGAGCTTCTTGAAGTATCACTGAAATACTTA 300
Query 301 GAGGTTTGTGGAGGAGCTAAGGACGCAGCTTCGAGGATCAAGAAGATTGTTGTCGAGCTT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GAGGTTTGTGGAGGAGCTAAGGACGCAGCGTCGAGGATCAAGAAGATTGTTGTCGAGCTT 360
Query 361 CAGTCTGCTTTGAGAAGGAGCAAGAAAGGAGGTGAGTTTAGCCTCGAGAGTGACGTGGAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 CAGTCTGCTTTGAGAAGGAGCAAGAAAGGAGGTGAGTTTAGCCTCGAGAGTGACGTTGAC 420
Query 421 GCTTATGTGGCGTCTAGGAAAGAGATCAAGCAGGAGATCAAGAAGTATATGGTAATGTCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTATGTGGCGTCTAGGAAAGAGATCAAGCAGGAGATCAAGAAGTATATGGTAATGTCG 480
Query 481 AAAGAGACAGATGCGTCTTTGGAGAGTGTTTGGTGTGATGGCGATGATCAAGAGATGAGT 540
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 AAAGAGACCGATGCGTCTTTGGAGAGTGTTTGGTGTGATGGTGATGATCAAGAGATGAGT 540
Query 541 GCTTTAGTTAGAGTGATGCAAGAGACGAGTGTAATGACTTGTTTCGTCTTACGCTCGGTC 600
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTCTGGTTAGAGTGATGCAAGAGACGAGTGTAATGACTTGTTTCGTCTTACGCTCGGTC 600
Query 601 TTCTCGTTCTTGTCGTCGCCTAAAGGGTTAAAGACTAAGAATCATCATCACCACAAAGGT 660
||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TTCTCCTTCTTGTCTTCGCCGAAAGGGTTAAAGACTAAGAATCATCACCACCACAAAGGT 660
Query 661 TGGGGGATTGTTATGAAGCTTGTGAAGAAAGGAATAGAACATCATCACCAGGAGAAAAGA 720
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 661 TGGGGGATTGTTATGAAGCTTGTGAAGAAAGGAATGGATCATCATCACCAGGAGAAAAGA 720
Query 721 GATTACGAGACGGGATTTTCTTGTCTCGTGCTTGAAGCTATGGAATCTGAGCTTGGGAAG 780
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATCATGAGACGGGATTTTCTTGTCTCGTGCTTGAAGCTATGGAATCTGAGCTTGGGAAG 780
Query 781 CTCGTTGTGATGATGACAAGGGAAGATCAAGAAGAAGAGAAAAAGATTAGTGAAGAAGTA 840
|| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 CTTGTTGTGATGACGACGAGGGAAGATCAAGAAGAGGAGAAAAAGATTAGTGAAGAAGTA 840
Query 841 TCTGAGAGGGTTCAATGTGCATTGGTTAGATCCGAAGGTGTAGAGGCAGCCATGGAAGAG 900
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCTGAGAAGGTTCAATGTACATTGGTTAGATCCGAAGGTGTAGAGGCAGCCATGGAAGAG 900
Query 901 CTTGAAGAGGGACTTGAAGGATTGTTCAAGGTAATGATACAAGCTAGAGTCTCTCTTCTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTTGAAGAGGGACTTGAAGGATTGTTCAAGGTAATGATACAAGCTAGAGTCTCTCTTCTT 960
Query 961 AACATCCTCTCCACTTAA---AA--TGGATCAGATTCGAATTTCTTGGTCTGGATTGGAA 1015
|||||||||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct 961 AACATCCTCTCCACTTAATTCAAAATGGATCAGATTCGAATTTCTTGGTCTGGATT--A- 1017
Query 1016 ATAAGTTAGTTGCTACTTGACCAGTCGAttggttttaaaatcttggtttggtttttgttt 1075
|| | | ||| | | || | |||||||||||||||||| ||||
Sbjct 1018 ----GTC-G-----A-TTG----G--G-TT--T---AAAATCTTGGTTTGGTTT--GTTT 1052
Query 1076 gtttgttcttgtatgttgtGAGAGAGAGTTTAAACATGCGTCCATGTTTTAGAGGATGTG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GTTTGTTCTTGTATGTTGTGAGAGAGAGTTTAAACATGCGTCCATGTTTTAGAGGATGTG 1112
Query 1136 TGTTTGTTGTAAGTGTGTA-ACCCGTTCAGGTGTGAAAAACTCTTGTAAAGTTTTATGTA 1194
||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||
Sbjct 1113 TGTTTGTTGTAAGTGTGTACATC-GTTCAGGTGTGAACAACTCTTGTAAAGTTTTATGTA 1171
Query 1195 C 1195
|
Sbjct 1172 C 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44756304558
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5