BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35730.1 Length=1588 Score E Sequences producing significant alignments: (Bits) Value Ahg491075 jgi|Araly1|491075|fgenesh2_kg.7__508__AT4G35730.1 2483 0.0 Ahg943750 jgi|Araly1|943750|scaffold_604294.1 220 2e-56 Ahg933390 jgi|Araly1|933390|scaffold_401378.1 215 9e-55 Ahg890983 jgi|Araly1|890983|Al_scaffold_0007_2969 189 5e-47 Ahg939867 jgi|Araly1|939867|scaffold_600411.1 183 3e-45 > Ahg491075 jgi|Araly1|491075|fgenesh2_kg.7__508__AT4G35730.1 Length=1555 Score = 2483 bits (1344), Expect = 0.0 Identities = 1461/1518 (96%), Gaps = 5/1518 (0%) Strand=Plus/Plus Query 67 AAGAAAATGACGGCGGCCGAAGTAGCTTCTGCGCAGACCAAGAAGCTCATGAAGTTTAGT 126 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 43 AAGAAAATGACGGCGGCCGAAGTAGCTTCTGCGCAGACCAAAAAGCTCATGAAGTTTAGT 102 Query 127 CTTTCTCTCTTCCGTCGTGGCTTTAACTCCTCTAAATGCAAAACGGCGGCGAAGATGGCT 186 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 103 CTCTCTCTCTTCCGTCGTGGTTTTAACTCCTCTAAATGCAAAACGGCGGCGAAGATGGCT 162 Query 187 GTGGCTCGTATAAAGCTTATAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATGAGGCGT 246 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 163 GTGGCTCGGATAAAGCTTTTAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATGAGGCGT 222 Query 247 GACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACTGCTCGAATCAGAGTTGAGCAT 306 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 223 GACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACCGCTCGAATCAGAGTTGAGCAT 282 Query 307 GTGATAAGGGAACAGAACATTCAGGCAGCAAACGAAATCATTGAGCTTTTCTGTGAACTT 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 GTGATAAGGGAACAGAACATTCAGGCAGCAAACGAAATCATTGAGCTTTTCTGTGAACTT 342 Query 367 ATTGTTTCTCGTCTCACTATCATCACTAAGCAAAAGCAATGTCCTGTGGATCTTAAGGAA 426 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 ATTGTTGCTCGTCTCACTATCATCACTAAGCAAAAGCAATGTCCTGTGGATCTTAAGGAA 402 Query 427 GGTATTGCTAGTTTGATTTTTGCTGCGCCTAGATGCTCTGAAATTCCTGAGCTTGGAGAT 486 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 403 GGTATTGCTAGTTTGATTTTTGCTGCGCCTAGATGCTCTGAGATTCCTGAGCTTGGAGAT 462 Query 487 CTTAGAGACATCTTTGCGAAGAAATATGGGAAAGATTTTGTATCTGCTGCTACTGATTTG 546 ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 463 CTTCGAGACATCTTTGAGAAGAAGTATGGGAAAGATTTTGTATCTGCTGCTACTGATTTG 522 Query 547 CGTCCTAGCTGCGGTGTTAACCGGATGTTGATTGATAAGCTTTCGGTTAGAAATCCCGGT 606 |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct 523 CGTCCTAGCTGCGGCGTAAACCGAATGTTGATTGATAAGCTTTCGGTTAGAAATCCCGGT 582 Query 607 GGAGAATACAAACTGAAAATCATGAAGGAAATTGCAAAGGAATTCCAGGTTGATTGGGAT 666 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 GGAGAATACAAACTCAAAATCATGAAGGAAATTGCAAAGGAATTCCAGGTTGATTGGGAT 642 Query 667 ACTACAGAGACAGAGCAAGAACTTCTCAAACCTCAAGAAGAAAGCATAGACGGGCCACGT 726 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 ACTACAGAGACGGAGCAAGAACTTCTCAAACCTCAAGAAGAAAGCATAGACGGGCCACGT 702 Query 727 AAGTTTGTTAGCGCTTCAAGCTTACCAGTTAATCGTGCAGCTATCAACGAGCCTATTGAT 786 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 703 AAGTTTGTTAGCGCTTCAAGCTTACCAGTTAATCGTGAAGCTATCAACGAGCCTTTTGAT 762 Query 787 CCTACCAAAGCAGTGCCAAGATCGACTAGTAGCATGAGCATCAACACGCATTATCATGAC 846 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 763 CCTACCAAAGCAGTGCCGAGATCGACTAGTAGCATGAGCATCAACACGCATTATCATGAC 822 Query 847 ACCGAGTCAGCAGCGGAAGCAGCTACAGAATTAGCCAAACAGGCAGTTGCAGCAGCACAA 906 ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 823 ACCGAGTCAGCAGTGGAAGCAGCTACTGAATTAGCCAAACAGGCAGTTCCAGCAGCACAA 882 Query 907 GTAGCCTCCTTATTAGCTACCAGAAGAGACAGCAGCAACAAGGAGTTCTCTGTATCTTCT 966 |||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| Sbjct 883 GTAGCCTCCTTATTAGCTACCAGAAGAGACAGCA-C--CAAGGAATTCTCTGTATCTTCT 939 Query 967 GATCATTCAACACACCAGAAGGATTCACAGTACATGGatcatcatcatcatcatcCAGGT 1026 |||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 940 GATCGTTCAACAAATCAGAAGGATTCACAGTACATGGATCATCATCATCATCATCTAGGT 999 Query 1027 TCAAGAAGACAATCACGAGACTCCGAAACAAGTTCCTATTACGCAAAACCTGGTGCAGAA 1086 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1000 TCAAGAAGAGAATCACGAGACTCCGAAACAAGTTCCTATTACGCAAAACCTAGTGCAGAA 1059 Query 1087 AACAGAGGAATGGGTAGGAGACACAGCTACAACAATCCGGGTATTAATGAATCTGACTAC 1146 ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 1060 AACAGGGGAATGGGTAGAAGACACAGCTACAACTATCCGGGTATTAATGAATCTGACTAC 1119 Query 1147 GAGGAAGAGTATACCAATACCGAAGCAGAAGCAAAAGAAACAATGAGGAGGAGACACAGC 1206 |||||||| || ||||| ||| ||||||||||||| |||||||||||||||||||||||| Sbjct 1120 GAGGAAGACTACACCAAGACCAAAGCAGAAGCAAAGGAAACAATGAGGAGGAGACACAGC 1179 Query 1207 TACAACCCTCGATCAGTTCCTCCTCCTGCAACTTCTGAGATCAAGTTTGATGAGTCAGAC 1266 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1180 TACAACTCTCGATCAGTTCCTCCTCCTGCAACTTCTGAGATCAAGTTTGATGAGTCAGAC 1239 Query 1267 TACTACGAGGAAGAGACAGAGCCAGATGAACCATCACAGGGTCGTGTTTCTTCTCTCCCG 1326 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1240 TACTACGAGGAAGAGACAGAGCCAGAAGAACCATCACATGGTCGTGTTTCTTCTCTCCCG 1299 Query 1327 CCAAACCGAGCACCGCCTCAGGCTCCTCAGTCCGGTGAGTCCAGACAGGACTCGAGCGGT 1386 |||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 1300 CCAAACCGAGAACCTCCTCAGGCTCCTCAGTCCGGTGAGTCCAGACGGGACTCAAGCGGT 1359 Query 1387 CACCAGGTTCACCCAAAACTGCCTGACTATGATATTTTGGCTGCACGTTTTGAAGCAATC 1446 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1360 CACCATGTTCACCCAAAACTGCCTGACTATGACATTTTGGCTGCACGTTTTGAAGCAATC 1419 Query 1447 AGACACAGTAAAGGGCCATTGATCTGAAGCCAATAACTTCCACTACTGCTATATACATAG 1506 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1420 AGAAACAGTAAAGGGCCATTGATCTGAAGCCAATAACTTCCACTACTGCTATATA--TAG 1477 Query 1507 AAAGAAATCATGTACGGGATAATGCAACTATCATGTTTAGTTTTGTTTATGAAGAGGAAG 1566 |||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| Sbjct 1478 AAAGAAATCACGTACGGGATAATGCAATTATCATGTTTAGTTTTGTGTATGAAGAAGAAG 1537 Query 1567 AAGAAAGATGCATTTTTT 1584 ||||||||||||||||| Sbjct 1538 TAGAAAGATGCATTTTTT 1555 > Ahg943750 jgi|Araly1|943750|scaffold_604294.1 Length=203 Score = 220 bits (119), Expect = 2e-56 Identities = 133/140 (95%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 160 AAATGCAAAACGGCGGCGAAGATGGCTGTGGCTCGTATAAAGCTTATAAGGAACAAGAGA 219 ||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 50 AAAAGCAAAACGGCGGCGAAGATGGATGTGGCTCGGATAAAGCTTATAAGGAACAAGAGA 109 Query 220 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGAT 279 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 110 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGATGTTCTTCTTCAATCCGGTCAAAAT 169 Query 280 GCCACTGCTCGAATCAGAGT 299 ||||| ||| |||||||||| Sbjct 170 GCCACCGCTTGAATCAGAGT 189 > Ahg933390 jgi|Araly1|933390|scaffold_401378.1 Length=205 Score = 215 bits (116), Expect = 9e-55 Identities = 131/138 (95%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 160 AAATGCAAAACGGCGGCGAAGATGGCTGTGGCTCGTATAAAGCTTATAAGGAACAAGAGA 219 ||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| Sbjct 1 AAA-GCAAAACGGCGGCGAAGATGGATGTGGCTCGGATAAAGCTTCTAAGGAACAAGAGA 59 Query 220 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGAT 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGAT 119 Query 280 GCCACTGCTCGAATCAGA 297 ||||| ||| | |||||| Sbjct 120 GCCACCGCTTGTATCAGA 137 > Ahg890983 jgi|Araly1|890983|Al_scaffold_0007_2969 Length=195 Score = 189 bits (102), Expect = 5e-47 Identities = 112/117 (96%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 181 ATGGCTGTGGCTCGTATAAAGCTTATAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATG 240 |||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATGTGGCTCGGATAAAGCTTCTAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATG 60 Query 241 AGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACTGCTCGAATCAGA 297 |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 61 AGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACCGCTCGTATCAGA 117 > Ahg939867 jgi|Araly1|939867|scaffold_600411.1 Length=1795 Score = 183 bits (99), Expect = 3e-45 Identities = 113/120 (94%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 402 GCAATGTCCTGTGGATCTTAAGGAAGGTATTGCTAGTTTGATTTTTGCTGCGCCTAGATG 461 |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1613 GCAATGTCTTGTGGATCTTAAGGAAGGTATTGCTAGTTTGATTGTTGCTGCACCTAGATG 1672 Query 462 CTCTGAAATTCCTGAGCTTGGAGATCTTAGAGACATCTTTGCGAAGAAATATGGGAAAGA 521 |||||| ||||||||||||||||||||| |||||||||||| |||||| ||||||||||| Sbjct 1673 CTCTGAGATTCCTGAGCTTGGAGATCTTCGAGACATCTTTGAGAAGAAGTATGGGAAAGA 1732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59496962690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5