BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35900.1 Length=1344 Score E Sequences producing significant alignments: (Bits) Value Ahg888467 jgi|Araly1|888467|Al_scaffold_0007_453 1271 0.0 > Ahg888467 jgi|Araly1|888467|Al_scaffold_0007_453 Length=849 Score = 1271 bits (688), Expect = 0.0 Identities = 805/860 (94%), Gaps = 13/860 (2%) Strand=Plus/Plus Query 152 ATGTTGTCATCAGCTAAGCATCAGAGAAACCATAGACTCTCTGCTACAAACAAGAACCAG 211 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGTTGTCATCAGCAAAGCATCAGAGAAACCATAGAGTCTCTGCTACAAACAAGAACCAG 60 Query 212 ACTCTCACCAAAGTttcttccatttcatcctcatcaccatcgtcttcttcttcatcatca 271 ||||||| || ||||||||||||||||||||||||||||||| || | |||||| Sbjct 61 ACTCTCAACAGAGTTTCTTCCATTTCATCCTCATCACCATCG------TC-T--TCATCA 111 Query 272 tcaacctcatcatcatctCCTTTACCTTCTCAAGACTCTCAAGCCCAGAAGAGATCTCTT 331 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 112 TCAACCTCATCATCATCTCCTTTACCTTCACAAGACTCTCACGCCCAGAAGAGATCTCTA 171 Query 332 GTCACCATGGAAGAAGTTTGGAATGACATCAACCTTGCTTCCATCCACCACCTAAACCGA 391 ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 172 ATCACCATGGAAGAGGTTTGGAAAGACATCAACCTTGCTTCCATCCACCACCTAAACCGA 231 Query 392 CACAGCCCTCATCCACAACACAACCACGAGCCAAGGTTCAGGGGCCAAAACCACCACAAC 451 |||||||| ||||| ||||||||||| ||||||||||||||| |||| ||||| || ||| Sbjct 232 CACAGCCCACATCCTCAACACAACCATGAGCCAAGGTTCAGGAGCCACAACCATCAGAAC 291 Query 452 CAAAACCCTAACTCAATCTTCCAAGATTTTCTCAAAGGATCTTTGAACCAGGAACCAGCA 511 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 292 CAAAACCCTAACTCAATCTTCCAAGATTTTCTCAACGGATCTTTGAACCAGGAACCAGCA 351 Query 512 CCCACAAGCCAGACCACGGGTTCTGCGCCTAATGGCGATTCCACCACGGTCACTGTTCTT 571 ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||| ||| Sbjct 352 CCCACAAGCTTGACCACGGGTTCTGCGCCTAATGGTGATTCCACCGCTGTCACTGCTCTC 411 Query 572 TACAGCTCTCCTTTTCCACCTCCTGCAACTGTTCTGAGCTTGAATTCCGGCGCTGGCTTC 631 | ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| Sbjct 412 TGCAGCTCTCCTTTTCCACCTCCAGCAACTGTCCTGAGCTTGAATTCTGGCGCTGGCTTC 471 Query 632 GAGTTTCTCGATAACCAAGATCCTCTTGTTACCTCAAACTCTAATCTTCATACCCACCAT 691 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 472 GAGTTTCTCGATAACCAAGATCCTCTTGTTACCTCAAACTCTAATCTTCATAGCCACCAT 531 Query 692 CACCTCTCAAACGCTC-ATGCCTTCAACAC-CTCTTTCGAGGCTCTGGTTCCATCCAGTT 749 ||||||||||||| || || |||||||||| | |||| |||||||||||||| |||| || Sbjct 532 CACCTCTCAAACGTTCAAT-CCTTCAACACAC-CTTTTGAGGCTCTGGTTCCGTCCACTT 589 Query 750 CTTTTGGTAAGAAAAGAGGCCAAGATTCCAATGAAGGTTCAGGGAATAGAAGACATAAGC 809 |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 590 GTTTTGGTAAGAAAAGAGGCCAAGAGTCCAATGAAGGTTCAGGGAATCGAAGACATAAGC 649 Query 810 GTATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGCGCTAGGAAACAGGCTTATACAA 869 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 650 GTATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGAGCTAGGAAACAGGCTTATACAA 709 Query 870 ACGAGTTAGAACTTGAAGTTGCTCACTTGCAGGCAGAAAATGCAAGACTCAAGAGACAAC 929 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 710 ACGAGTTAGAACTTGAAGTTGCTCACCTGCAGGCAGAAAATGCAAGACTCAAGAGACAAC 769 Query 930 AAGATCAGTTAAAAATGGCTGCAGCAATTCAGCAACCCAAAAAGAACACACTTCAACGGT 989 | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 AGGATCAGTTGAGAATGGCTGCAGCAATTCAGCAACCCAAAAAGAACACACTTCAACGGT 829 Query 990 CTTCCACAGCTCCATTTTGA 1009 |||||||||||||||||||| Sbjct 830 CTTCCACAGCTCCATTTTGA 849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50284127523 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5