BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36030.1
Length=2371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491031 jgi|Araly1|491031|fgenesh2_kg.7__464__AT4G36030.1 3576 0.0
> Ahg491031 jgi|Araly1|491031|fgenesh2_kg.7__464__AT4G36030.1
Length=2351
Score = 3576 bits (1936), Expect = 0.0
Identities = 2134/2230 (96%), Gaps = 11/2230 (0%)
Strand=Plus/Plus
Query 9 GACGACTTGGTAAATGTACTAATAAGTAATTTACTCCGACAACGAAAGCCGGCGACGACC 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GACGACTTGGTAAATGTACTAATAAGTAATTTACTCCGACAACGAAAGCCGGCGACGACC 60
Query 69 GGCGTGTTCTGTAAGAAATACATTAGAAATGACAGAAACCGTGTTTCAAAGACCAAACCA 128
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GGCGTGTTCTGTAAGAAATACATTAGAAATGAAAGAAACCGTGTTTCAAAGACCAAACCA 120
Query 129 AACCAAACCCCAACAAAATGTTTCTTCATTTTCTTTAAAATTAAGATCAACCCGTTTTTG 188
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 AACCAAA-CCCAACAAAATGTTTCTTCATTTTCTTTAAAATTAAGATCAACCCGTTTCTG 179
Query 189 ATTTTCTTGATCGT-AACCAGTTTCGTTA-TCCATGGGTGATCTAGCCAAGCAGATATTG 246
|||||||||||| | ||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 180 ATTTTCTTGATC-TAAACCAGTTTTGTTAGGCTATGGGTGATCTAGCCAAGCAGATATTG 238
Query 247 TCTCGCCCGATTCAACTTGCAGACCAAGTGGTGAAAGCCGGAGATGAAGCCACAATCAAC 306
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 TCTCGACCGATTCAACTCGCAGACCAAGTTGTGAAAGCCGGAGATGAAGCCACAATCAAC 298
Query 307 AAACAAGAATGTGCCGATATCAAGTCCAAAACGGAAAAGCTCGCTGCTCTTCTCCGTCAA 366
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 299 AAACAAGAATGTGCCGATATCAAGTCCAAGACGGAAAAGCTCGCTGCTCTTCTCCGTCAA 358
Query 367 GCGGCCCG-TGCAAGCTCCGACCTCTACGAACGTCCCACGCGCCGTATCCTCGACGACAC 425
||||| || | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 GCGGCGCGCT-CAAGCTCCGACCTCTACGAACGTCCCACGCGCCGTATCATCGACGACAC 417
Query 426 TGAAAACGTTCTTGAAAAAGCATTGACGATGGTCCAAAGATGCCGTGACGATGGCTACAT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGAAAACGTTCTTGAAAAAGCATTGACGATGGTCCAAAGATGCCGTGACGATGGCTACAT 477
Query 486 AATGCGACTTTTCAACATAATCCCCGCCGCAGCATTCCGTAAAATGATTTCTCAACTAGA 545
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AATGCGTCTTTTCAACATAATCCCCGCCGCAGCATTCCGTAAAATGATTTCTCAACTAGA 537
Query 546 AAACTCCGTCGGCGACGTCTCTTGGCTCCTCCGTGTCTCAACTCCAGCCGGTAACGATGA 605
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 538 AAACTCCGTCGGCGATGTCTCTTGGCTCCTCCGTGTCTCAACTCCCGCCGGTAACGACGA 597
Query 606 CGACGAAGGGTTTGGTTACTTAGGTCTCCCGCCAATCGCAGCCAACGAACCAATCTTGTG 665
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 598 CGACGAAGGATTTGGTTACTTAGGTCTCCCTCCAATCGCAGCCAACGAACCAATCTTATG 657
Query 666 CTTAATTTGGGAACAAATCGCGGTTCTGATGACCGGTTCGCCGGAAGATAAATCAGACGC 725
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 658 CTTAATTTGGGAACAAATCGCGGTTTTGATGACCGGTTCGCCGGAAGATAAATCCGACGC 717
Query 726 CGCCGCGTCGTTGGCTTCTTTAGCAAGAGATAACGATAGATACGTGAAACTGATAGTTGA 785
||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 718 CGCCGCGTCCTTGGCTTCGTTAGCAAGAGATAACGACAGATACGTGAAATTGATAGTTGA 777
Query 786 AGAAGGCGGAGTCAACCCTTTGTTGAAACTTGTAAAAGAAGGTAAAATCGACGGTCAAGA 845
|||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 778 AGAAGGTGGAGTCAACCCTTTGTTAAAACTTCTGAAAGAAGGTAAAATCGACGGTCAAGA 837
Query 846 AAACGCAGCGAGAACAATCGGGTTACTGGGTCGTGACCCGGAAAGTGTTGAGCATATGAT 905
|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 838 AAACGCGGCGAGAACAATCGGGTTATTGGGTCGTGACCCGGAAAGTGTTGAACATATGAT 897
Query 906 TCAGCTTGGTGTTTGTTCAGTGCTTTCAAGTATTCTTAAAGAAGGTTCGATGAAGGTTCA 965
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 898 TCAGCTTGGTGTTTGTTCAGTTCTTTCAAGTATTCTTAAAGAAGGCTCGATGAAGGTTCA 957
Query 966 AGCCGTTGTGGCTTGGGCTGTTTCAGAGCTTGTTTCTGGTAATCACGCCAAATGTCAAGA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGCCGTTGTGGCTTGGGCTGTTTCAGAGCTTGTTTCTGGTAATCACGCCAAATGTCAAGA 1017
Query 1026 ACTGTTTGCGCAAAACAACGTGATTAGGCTTCTTGTGAGTCATTTAGCGTTTGAAACGGT 1085
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACTGTTCGCGCAAAACAACGTGATTAGGCTTCTTGTGAGTCATTTAGCGTTTGAAACGGT 1077
Query 1086 TCAAGAACATAGCAAATACGCGGTTGTTGCGGGTAGAGCAACGTCGATGCATCACGCCGT 1145
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1078 TCAAGAACATAGCAAATACGCGGTTGTTGCGGGTAGAGCTACGTCGATGCACCACGCCGT 1137
Query 1146 CGTAATGGCGAGTAAAATCAGTAGTAGTAAAGAGAATTTACCGGCGTTGAACGAGGAGGA 1205
||| ||||| || |||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1138 CGTGATGGCTAGCAAAATCAGTACTAGTAAAGAGAATTTACCGACGTTGAACGAGGAGGA 1197
Query 1206 GGACGACGATAATCATATCGGAGTCTCGAGTCCGATGACGAATCAGATGCATAGCATCGT 1265
|||||| |||||| || ||| |||||| ||||||| ||||||||||||||||||||||
Sbjct 1198 GGACGA---TAATCAGATGGGAATCTCGAATCCGATGCCGAATCAGATGCATAGCATCGT 1254
Query 1266 TGCAACAACAATGGCGATGAAAGCGGTTGGATCAGGATCGAAATCGAATCTTTCTAGCCG 1325
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1255 TGCAACAACAATGGCGATGAAAGCGGTTGGATCGGGATCGAAATCGAATCTGTCTAGCCG 1314
Query 1326 ATTTGTTACCGGCGACGACGATAAACCCCCGGAAAAGATACCGGAGAAGAGTTATAGTAT 1385
|||||||||||| |||||||| ||||| ||||||||| | ||||||||||||||||||||
Sbjct 1315 ATTTGTTACCGGTGACGACGAGAAACCGCCGGAAAAGCTGCCGGAGAAGAGTTATAGTAT 1374
Query 1386 GAGTTCACAGATCAAGGCTTACGGTAGTATCG-CACATCAATCGCGAAACGCGTCGGTGA 1444
|||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 1375 GAGTTCACAGCTCAAGGCTTACGGTAGTA-CGGCACATCAATCGAGAAACGCGTCGGTGA 1433
Query 1445 CGAGAGGGAGAGAGCTTGAAGATCCGGTGACGAAGACTTATATGAAAGCGATGGCGGCGA 1504
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1434 CGAGAGGGAGAGAGCTTGAAGATCCGGTGACGAAGACTTACATGAAAGCGATGGCGGCGA 1493
Query 1505 GAGCGTTATGGAAACTCGCTGTAGGAAACTCATCGATCTGCCGAGTCATCACCGAGTCAC 1564
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GAGCGTTGTGGAAACTCGCTGTAGGAAACTCATCGATCTGCCGAGTCATCACCGAGTCAC 1553
Query 1565 GAGCTTTACTCTGTTTTGCGGTTTTACTAGACAAAGGAGACGAAGAGACTAAGTATAACA 1624
||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1554 GAGCTTTGCTCTGTTTTGCGGTTTTACTAGACAAAGGAGACGATGAAACCAAGTATAACA 1613
Query 1625 CAGCTATGGCTATCATGGAGATAACCGCCGTGGCTGAGGAAAACGCAGATCTGAGAAGAT 1684
|||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1614 CAGCGATGGCTATAATGGAGATAACCGCCGTGGCTGAAGAAAACGCAGATCTGAGACGAT 1673
Query 1685 CCGCGTTCAGACGCACTTCACCGGCGTGCAAAGCGGTGGTTGACCAGTTATTCCGAATCG 1744
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1674 CCGCGTTCAGACGCACTTCACCGGCGTGCAAAGCGGTGGTTGACCAATTATTCCGAATCG 1733
Query 1745 TTGAAAACGCCGACGCCGGATCCGATTTACTCATCCCCTGTGTAAGATCCATCGGAAACC 1804
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1734 TTGAAAACGCCGACGCCGGATCCGATTTACTCATCCCCTGTGTCAGATCCATCGGAAACC 1793
Query 1805 TAGCGAGAACGTTCAAATCAGCGGAAACGCATATGATCGTGCCTCTGGTAAAACTCCTCG 1864
|||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1794 TAGCTAGAACATTCAAATCCGCGGAAACGCATATGATCGTGCCTCTGGTTAAACTCCTCG 1853
Query 1865 ACGACGGAGAACCAGATTTAGCGGCGGAGGTAGCGATCGCGTTAGCGAAATTCGCGACGG 1924
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1854 ACGACGGAGAACCAGATTTAGCGGCGGAGGTAGCGATCGCGTTAGCGAAATTCGCGACAG 1913
Query 1925 AGGATAACTTTTTAGGGAAAGAACACTCGAGGACAATCATCGAAGCTGGAGGATCAAAGC 1984
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1914 AGGATAACTTTTTAGGAAAAGATCACTCGAGGACGATCATCGAAGCTGGAGGATCAAAGC 1973
Query 1985 TTCTGGTTCAGTTAGCGTATTTCGGAGAGAACGGAGCACAGATTCCGGCGATGGTTTTGC 2044
|||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1974 TTCTAGTTCAACTAGCGTATTTCGGAGAGAAAGGAGCTCAGATTCCGGCGATGGTTTTGT 2033
Query 2045 TGAGCTACGTGGCGATGAATGTTCCAGACAGTGAACAGTTAGCGAAAGACGAAGTGTTAA 2104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 TGAGCTACGTGGCGATGAATGTTCCAGACAGTGAACAGTTAGCGAAAGACGAAGTGTTAA 2093
Query 2105 CGGTATTGGAATGGTCATCGAAGCAAGCTAATGTACTTGAAGATGAAGATATGGAAGCTT 2164
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2094 CGGTATTGGAATGGTCATCGAAGCAAGCTTATGTAATTGAAGATGAAGATATGGAAGCTT 2153
Query 2165 TGTTGTATGAAGCTAAGAGCAGACTCGAGCTTTACCAATCAAGAGGATCTAGAGGCTTTC 2224
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2154 TGTTGTATGAAGCTAAGAGCAGACTCGAGCTTTACCAATCCAGAGGATCCAGAGGCTTTC 2213
Query 2225 ACTTGTAATT 2234
||||||||||
Sbjct 2214 ACTTGTAATT 2223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89321624525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5