BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36130.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491018 jgi|Araly1|491018|fgenesh2_kg.7__451__AT4G36130.1 1397 0.0
Ahg906639 jgi|Araly1|906639|Al_scaffold_0003_3767 974 0.0
Ahg952058 jgi|Araly1|952058|scaffold_3400002.1 233 2e-60
Ahg356646 jgi|Araly1|356646|fgenesh1_pg.C_scaffold_8000433 196 2e-49
Ahg352483 jgi|Araly1|352483|fgenesh1_pg.C_scaffold_6003076 191 1e-47
Ahg952312 jgi|Araly1|952312|scaffold_58200001.1 187 1e-46
> Ahg491018 jgi|Araly1|491018|fgenesh2_kg.7__451__AT4G36130.1
Length=854
Score = 1397 bits (756), Expect = 0.0
Identities = 808/834 (97%), Gaps = 0/834 (0%)
Strand=Plus/Plus
Query 38 AAGAATCATCCATGGGTCGTGTTATCAGAGCACAACGTAAGGGAGCTGGTTCCGTCTTCA 97
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 21 AAGAATTATCCATGGGTCGTGTTATCAGAGCTCAACGTAAGGGAGCTGGTTCCGTCTTCA 80
Query 98 AATCCCACACTCACCACCGTAAAGGTCCGGCCAAATTCAGGAGTCTCGATTTCGGGGAGA 157
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 81 AATCCCACACTCACCACCGTAAAGGTCCGGCCAAATTCAGAAGCCTCGATTTCGGCGAGA 140
Query 158 GAAATGGTTATCTGAAAGGTGTTGTGACGGAGATCATTCACGATCCAGGACGTGGTGCTC 217
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 141 GAAATGGTTACCTCAAAGGTGTCGTGACGGAGATCATTCACGATCCAGGACGTGGTGCTC 200
Query 218 CATTGGCTCGTGTAGCTTTCCGTCATCCTTTCCGATTCAAGAAGCAGAAGGAGCTTTTCG 277
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CGTTAGCTCGTGTAGCTTTCCGTCATCCTTTCCGATTCAAGAAGCAGAAGGAGCTTTTCG 260
Query 278 TTGCTGCTGAAGGTATGTATACCGGTCAGTTTCTTTACTGTGGGAAGAAAGCTACTCTCG 337
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TTGCTGCTGAAGGTATGTACACCGGTCAGTTTCTTTACTGTGGGAAGAAAGCTACTCTCG 320
Query 338 TCGTCGGAAATGTTCTTCCTCTCAGATCTATTCCTGAAGGAGCTGTTATTTGTAACGTTG 397
|||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 321 TCGTTGGAAATGTTCTTCCTCTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAACGTTG 380
Query 398 AACATCATGTTGGTGATCGTGGTGTTTTCGCTAGAGCTTCTGGTGATTACGCCATTGTTA 457
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 381 AGCATCATGTTGGTGATCGTGGAGTTTTCGCTAGAGCTTCTGGTGATTACGCCATTGTTA 440
Query 458 TCGCTCACAATCCTGATAACGACACTAGCAGGATTAAGTTGCCATCGGGTTCGAAGAAGA 517
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 441 TCGCTCACAATCCTGATAACGACACCAGCAGGATTAAGTTGCCATCGGGTTCGAAGAAGA 500
Query 518 TTGTGCCAAGTGGATGCAGGGCCATGATTGGTCAAGTTGCAGGTGGTGGAAGAACAGAGA 577
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 501 TTGTACCAAGTGGATGCAGGGCTATGATTGGTCAAGTTGCAGGTGGTGGAAGAACAGAGA 560
Query 578 AGCCGATGCTCAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGCTGGC 637
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AGCCAATGCTTAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGCTGGC 620
Query 638 CTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATC 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATC 680
Query 698 AACATATTGGTCACGCTAGTACTGTTCGTCGTGATGCACCACCAGGAAAAAAGGTTGGTC 757
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 681 AACATATTGGTCACGCTAGTACTGTTCGTCGTGATGCACCACCCGGACAAAAGGTTGGTC 740
Query 758 TTATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTCTTGCTTCCAAGG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 741 TTATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTCTTGCTTCTAAGG 800
Query 818 CAGACTAAGGAGAGGAGGATTCAAGATGAAATTGTTCACttttttgggattttt 871
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 801 CAGACTAAGGAGAGAAGGATTCAAGATGAAATTTTTCACTTTTTTGGGATTTTT 854
> Ahg906639 jgi|Araly1|906639|Al_scaffold_0003_3767
Length=777
Score = 974 bits (527), Expect = 0.0
Identities = 699/782 (89%), Gaps = 12/782 (2%)
Strand=Plus/Plus
Query 49 ATGGGTCGTGTTATCAGAGCACAACGTAAGGGAGCTGGTTCCGTCTTCAAATCCCACACT 108
||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACT 60
Query 109 CACCACCGTAAAGGTCCGGCCAAATTCAGGAGTCTCGATTTCGGGGAGAGAAATGGTTAT 168
|||||||| ||||||||||| || ||| | || ||||||||||| ||| ||||||||||
Sbjct 61 CACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGCGAAATGGTTAC 120
Query 169 CTGAAAGGTGTTGTGACGGAGATCATTCACGATCCAGGACGTGGTGCTCCAT-TGGCTCG 227
|| || || || |||||||||||||| |||||||| || ||||||||||| | | |||||
Sbjct 121 CTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCC-TCTTGCTCG 179
Query 228 TGT-AGCTTTCCGTCATCCTTTCCGATTCAAGAAGCAGAAGGAGCTTTTCGTTGCTGCTG 286
|| | ||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||
Sbjct 180 CGTCA-CTTTCCGTCATCCTTTCCGTTTCAAGAAACAGAAGGAGCTCTTCGTCGCCGCTG 238
Query 287 AAGGTATGTATACCGGTCAGTTTCTT-TACTGTGGGAAGAAAGCTACTCTCGTCGTCGGA 345
|||||||||| ||||| ||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 239 AAGGTATGTACACCGGCCAG-TTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTCGGA 297
Query 346 AATGTTCTTCCTCTCAGATCTATTCCTGAAGGAGCTGTTATTTGTAACGTTGAACATCAT 405
|||||||||||||| |||||||| ||||||||||||||| | ||||||||||| || |||
Sbjct 298 AATGTTCTTCCTCTTAGATCTATCCCTGAAGGAGCTGTTGTGTGTAACGTTGAGCACCAT 357
Query 406 GTTGGTGATCGTGGTGTTTTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCAC 465
|| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 GTCGGTGATCGTGGTGTTCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATTGCTCAC 417
Query 466 AATCCTGATAACGACACTAGC-AGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTGCC 524
|| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 418 AACCCTGACAACGACACTA-CTAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTCCC 476
Query 525 AAGTGGATGCAGGGCCATGATTGGTCAAGTTGCAGGTGGTGGAAGAACAGAGAAGCCGAT 584
||||||||||| || |||||||| |||||||| || ||||||||||| |||||||||||
Sbjct 477 GAGTGGATGCAGAGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGAT 536
Query 585 GCTCAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGC-TGGCCTAAGG 643
||||||||| || ||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 537 GCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGAAACT-CATGGCCTAAGG 595
Query 644 TTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATCAACATA 703
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || |
Sbjct 596 TTCGTGGTGTGGCTATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACA 655
Query 704 TTGGTCACGCTAGTACTGTTCGTCGTGATGCACCACCAGGAAAAAAGGTTGGTCTTATTG 763
|||||||||| ||||| ||| | ||||||||||| || ||| | |||||||| |||||||
Sbjct 656 TTGGTCACGCCAGTACGGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGGCTTATTG 715
Query 764 CTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCT-CTTGCTTCCAAGGCAGAC 822
|||||||||||||||| |||||||||||||||||||||||| | || |||||||||||
Sbjct 716 CTGCAAGGAGGACTGGACGTCTCAGAGGTCAAGCTGCTGCTTCA-GCCGCCAAGGCAGAC 774
Query 823 TA 824
||
Sbjct 775 TA 776
> Ahg952058 jgi|Araly1|952058|scaffold_3400002.1
Length=207
Score = 233 bits (126), Expect = 2e-60
Identities = 138/144 (96%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 487 AGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTGCCAAGTGGATGCAGGGCCATGATT 546
||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 19 AGGATGAAGTTGTCATCGGGTTCGAAGAAGATTGTGCCAAGTGGATGCATGGCCATGATT 78
Query 547 GGTCAAGTTGCAGGTGGTGGAAGAACAGAGAAGCCGATGCTCAAGGCTGGTAACGCATAC 606
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 79 GGTCAAGTTGCAGGTGGTGGAAGAACTGAGAAGCCGATGCTAAAGGCTGGTAACACATAC 138
Query 607 CACAAGTACCGTGTGAAGAGAAAC 630
||||||||||||||||||||||||
Sbjct 139 CACAAGTACCGTGTGAAGAGAAAC 162
> Ahg356646 jgi|Araly1|356646|fgenesh1_pg.C_scaffold_8000433
Length=336
Score = 196 bits (106), Expect = 2e-49
Identities = 137/152 (90%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 585 GCTCAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGC-TGGCCTAAGG 643
|||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 147 GCTCAAGGGAGGTAACGCGTACCACAAGTACCGTGTGAAGAGAAACT-CATGGCCTAAGG 205
Query 644 TTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATCAACATA 703
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || |
Sbjct 206 TTCGTGGTGTGGCTATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACA 265
Query 704 TTGGTCACGCTAGTACTGTTCGTCGTGATGCA 735
| ||||| |||||||| ||| | |||||||||
Sbjct 266 TAGGTCAAGCTAGTACGGTTAGGCGTGATGCA 297
> Ahg352483 jgi|Araly1|352483|fgenesh1_pg.C_scaffold_6003076
Length=438
Score = 191 bits (103), Expect = 1e-47
Identities = 115/121 (95%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 493 AAGTTGCCATCGGGTTCGAAGAAGATTGTGCCAAGTGGATGCAGGGCCATGATTGGTCAA 552
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 4 AAGTTGCCATCGGGTTCGAAAAAGATTGTGCCAAGTGGATGCATGGCCATGATTGGTCAA 63
Query 553 GTTGCAGGTGGTGGAAGAACAGAGAAGCCGATGCTCAAGGCTGGTAACGCATACCACAAG 612
|||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||
Sbjct 64 GTTGCAGGTGGTGGAAGAACTGAGAAGCCGATGCTAAATGCTGGTAACACATACCACAAG 123
Query 613 T 613
|
Sbjct 124 T 124
> Ahg952312 jgi|Araly1|952312|scaffold_58200001.1
Length=292
Score = 187 bits (101), Expect = 1e-46
Identities = 136/153 (89%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 584 TGCTCAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGC-TGGCCTAAG 642
|||||||||| |||||||| |||||||||||||||||||||||||||| | |||| ||||
Sbjct 55 TGCTCAAGGCAGGTAACGCGTACCACAAGTACCGTGTGAAGAGAAACT-CATGGCGTAAG 113
Query 643 GTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATCAACAT 702
|||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct 114 GTTCGTGGTGTGGCTATGAACCCAGTGGAGCATTTTCATGGAGGAGGTAACCATCAACAC 173
Query 703 ATTGGTCACGCTAGTACTGTTCGTCGTGATGCA 735
|| ||||| |||||||| ||| | || ||||||
Sbjct 174 ATAGGTCAAGCTAGTACGGTTAGGCGGGATGCA 206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5