BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36220.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944252 jgi|Araly1|944252|scaffold_700481.1 2639 0.0
> Ahg944252 jgi|Araly1|944252|scaffold_700481.1
Length=1603
Score = 2639 bits (1429), Expect = 0.0
Identities = 1545/1601 (97%), Gaps = 7/1601 (0%)
Strand=Plus/Plus
Query 3 aaaaaaCACTCAATATGGAGTCTTCTATATCACAAACACTAAGCAAACTATCAGATCCCA 62
||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 8 AAAAAACTC-CAATATGGAGTCTTCTATATCACAAACACTAAGCAAAGTATCAGATCCCA 66
Query 63 CGACGTCTCTTGTCATCGTTGTCTCTCTTTTCATCTTCATCAGCTTCATCACACGGCGGC 122
| ||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 67 CAACGGCTCTTCTCATCGTCGTCTCTCTTTTCATCTTCATCGGCTTCATCACACGGCGGC 126
Query 123 GAAGGCCTCCATATCCTCCCGGTCCACGAGGTTGGCCCATCATAGGCAACATGTTAATGA 182
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 127 GAAGGCCTCCGTATCCTCCCGGTCCACGAGGCTGGCCCATCATAGGCAACATGTTAATGA 186
Query 183 TGGACCAACTCACCCACCGTGGTTTAGCCAATTTAGCTAA-AAAGTATGGCGGATTGTGC 241
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 187 TGGACCAACTCACCCACCGTGGTTTAGCCAATTTAGCTAAGAAA-TATGGCGGCTTGTGC 245
Query 242 CATCTCCGCATGGGATTCCTCCATATGTACGCTGTCTCATCACCCGAGGTGGCTCGACAA 301
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 246 CATCTCCGCATGGGATTCCTCCATATGTACGCTGTCTCATCACCCGACGTGGCTCGACAA 305
Query 302 GTCCTTCAAGTCCAAGACAGCGTCTTCTCGAACCGGCCTGCAACTATAGCTATAAGCTAT 361
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 306 GTCCTTCAAGTCCAAGACAGCGTCTTCTCGAACCGACCTGCAACTATAGCTATAAGCTAT 365
Query 362 CTGACTTACGACCGAGCGGACATGGCTTTCGCTCACTACGGACCGTTTTGGAGACAGATG 421
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TTGACTTACGACCGAGCAGACATGGCTTTCGCTCACTACGGACCGTTTTGGAGACAGATG 425
Query 422 AGAAAAGTGTGTGTCATGAAGGTGTTTAGCCGTAAAAGAGCTGAGTCATGGGCTTCAGTT 481
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 426 AGAAAAGTGTGTGTCATGAAGGTGTTTAGCCGTAAACGTGCTGAGTCATGGGCTTCAGTT 485
Query 482 CGTGATGAAGTGGACAAAATGGTCCGGTCGGTCTCTTGTAACGTTGGTAAGCCTATAAAC 541
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CGAGATGAAGTGGACAAAATGGTCCGGTCGGTCTCTTGTAACGTTGGTAAGCCTATAAAC 545
Query 542 GTCGGGGAGCAAATTTTTGCACTGACCCGCAACATAACTTACCGGGCAGCGTTTGGGTCA 601
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 546 GTCGGGGAGCAAATTTTCGCGCTGACCCGCAACATAACTTACCGGGCAGCGTTTGGGTCA 605
Query 602 GCCTGCGAGAAGGGACAAGACGAGTTCATAAGAATCTTACAAGAGTTCTCTAAGCTTTTT 661
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 606 GCCTGCGAGAAGGGACAAGACGAATTCATAAGAATCTTACAAGAGTTCTCTAAGCTTTTT 665
Query 662 GGAGCCTTCAACGTAGCGGATTTCATACCATATTTCGGGTGGATCGATCCGCAAGGGATA 721
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 666 GGAGCCTTCAACGTAGCGGATTTCATACCATATTTCGGGTGGATCGATCCACAGGGGATT 725
Query 722 AACAAGCGGCTCGTGAAGGCCCGTAATGATCTAGACGGATTTATTGACGATATTATCGAT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 726 AACAAGCGGCTCGTGAAGGCCCGTAATGATCTAGACGGATTTATTGACGATATCATCGAT 785
Query 782 GAACATATGAAGAAGAAGGAGAATCAAAACGCTGTGGATGATGGGGATGTTGTCGATACC 841
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 786 GAACATATGAAGAAGAAAGAGAATCAAAACGCTGTAGATGATGGGGATGTTGTTGATACC 845
Query 842 GATATGGTTGATGATCTTCTTGCTTTTTACAGTGAAGAGGCCAAATTAGTCAGTGAGACA 901
|||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||| ||
Sbjct 846 GATATGGTTGATGACCTTCTTGGTTTTTACAGTGAAGAGGCCAAATTAGTGAGCGAGGCA 905
Query 902 GCGGATCTTCAAAATTCCATCAAACTTACCCGTGACAATATCAAAGCAATCATCATGGAC 961
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 906 GCGGATCTTCAAAATTCCATCAAACTTACCCGTGACAATATCAAAGCAATTATCATGGAC 965
Query 962 GTTATGTTTGGAGGAACGGAAACGGTAGCGTCGGCGATAGAGTGGGCCTTAACGGAGTTA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GTTATGTTTGGAGGAACGGAAACGGTAGCGTCGGCGATAGAGTGGGCCTTAACGGAGTTA 1025
Query 1022 TTACGGAGCCCCGAGGATCTAAAACGGGTCCAACAAGAACTCGCCGAAGTCGTTGGACTT 1081
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1026 TTACGGAGCCCCGAGGATCTAAAACGGGTCCAACAAGAACTCGCTGAAGTAGTCGGACTT 1085
Query 1082 GACAGACGAGTTGAAGAATCCGACATCGAGAAGTTGACTTATCTCAAATGCACACTCAAA 1141
||| || |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1086 GACCGAAGAGTTGAAGAATCCGATATAGAGAAGTTGACTTATCTCAAATGCACACTCAAA 1145
Query 1142 GAAACCCTAAGGATGCACCCACCGATCCCTCTCCTCCTCCACGAAACCGCGGAGGACACT 1201
||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||
Sbjct 1146 GAAACCCTAAGGATGCACCCACCGATCCCACTCCTCCTACACGAAACCGCAGAAGACACT 1205
Query 1202 AGTATCGACGGTTTCTTCATTCCCAAGAAATCTCGTGTGATGATCAACGCGTTTGCCATA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 AGTATCGACGGTTTCTTCATTCCCAAGAAATCTCGTGTGATGATCAACGCGTTTGCCATA 1265
Query 1262 GGACGCGACCCAACCTCTTGGACTGACCCGGACACGTTTAGACCATCGAGGTTTTTGGAA 1321
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GGACGCGACCCAACCTCTTGGGCTGACCCGGACACGTTTAGACCATCGAGGTTTTTGGAA 1325
Query 1322 CCGGGCGTACCGGATTTCAAAGGGAGCAATTTCGAGTTTATACCGTTCGGGTCGGGTCGT 1381
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1326 CCGGGCGTACCGGATTTCAAAGGGAGTAATTTCGAGTTTATACCGTTCGGGTCGGGTCGT 1385
Query 1382 AGATCGTGCCCGGGTATGCAACTAGGGTTATACGCGCTTGACTTAGCCGTGGCTCATATA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AGATCGTGCCCGGGTATGCAACTAGGGTTATACGCGCTTGACTTAGCCGTGGCTCATATA 1445
Query 1442 TTACATTGCTTCACGTGGAAATTACCTGATGGGATGAAACCAAGTGAGCTCGACATGAAT 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 TTACATTGCTTCACGTGGAAATTACCTGATGGGATGAAACCAAGTGAGCTCGACATGAAT 1505
Query 1502 GATGTGTTTGGTCTCACGGCTCCTAAAGCCACGCGGCTTTTCGCCGTGCCAACCACGCGC 1561
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1506 GATGTGTTTGGTCTCACGGCTCCTAAAGCCACGCGTCTTTTCGCCGTGCCGACCACGCGC 1565
Query 1562 CTCATCTGTGCTCTTTAA-GTTTATGGTTCGAGTCACGTGG 1601
|||||||||||||||||| ||| ||||||| ||||||||
Sbjct 1566 CTCATCTGTGCTCTTTAAAGTT---GGTTCGAATCACGTGG 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5