BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36390.1
Length=2158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490998 jgi|Araly1|490998|fgenesh2_kg.7__431__AT4G36390.1 3110 0.0
> Ahg490998 jgi|Araly1|490998|fgenesh2_kg.7__431__AT4G36390.1
Length=2043
Score = 3110 bits (1684), Expect = 0.0
Identities = 1942/2064 (94%), Gaps = 27/2064 (1%)
Strand=Plus/Plus
Query 1 AGATTTTGTAAAATCCCTAAGCTTGAGAGAGCCTTCCGTTGTTGTGGTGGAGACTTTGGA 60
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1 AGATTTTGTAAAATCCCTAAGCCTGAGAGAGCCTCCCGTTGTTGTGGTGGAGACTTTGGA 60
Query 61 Gctcctcaatctctccaatggcgtcttcttctctctcgtctctctcctcaatcctcagta 120
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GCTCCTCAA--TCTCCAATGGCGTCTTCTTCTCTCTCGTCTCTCTCCTCAATCCTAAGTA 118
Query 121 accctcatggttgctctctctGTTTCAAAGCCTCTACACAACGTTGTTTCGCTCTTAGAT 180
||||||||||||| |||||||| |||||||||||||||| ||| ||||||||||||| ||
Sbjct 119 ACCCTCATGGTTGTTCTCTCTGCTTCAAAGCCTCTACACGACGCTGTTTCGCTCTTACAT 178
Query 181 TCCTCTCCTC-AAA--AGCAACCCATGCTTCTTCATCTTCTTCCTCTGCTCTTCTCCCTC 237
|||||||||| ||| || ||| |||| ||||||||||||||||| ||||||
Sbjct 179 TCCTCTCCTCGAAAGTAGTAACACATG---------CTTCTTCCTCTGCTCTTATCCCTC 229
Query 238 GTTGCCGTAGCAGCACCCATCGTCTCACACAGAAACCGATCAATAGGAAGAA-GGGATTT 296
|||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 230 GTTGCC---GCAGCACGCATCGTCTCACACAGAAGCCGATCAATAGGAAGAATGGG-TTT 285
Query 297 TCCTTAAATCTTTCTAGAAGCTTCTCTATTTCTCAAATTGCTAGTTCCGGTAAGTTTGAT 356
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 286 GCCTTAAATCTTTCTAGAAGCTTCTCTGTTTCTCAAATTGCTGGTTCCGGTAAGTTTGAT 345
Query 357 GGTCCAAGCCTCCACCAGTTCGTCTCCAACGCTCAAGCACACGCTTCTCTTACCACTCCC 416
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 346 GGTCCAAGCCTCCACCAGTTCGTCTCCAACGCTCAAGCACATGCTTCTCTTACTACTCCC 405
Query 417 GAAACTGAATCTGAAAGCACACTAGATTCTGACATTGCATCAAAAGGTCGGATTTATCAC 476
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 406 GAAACTGAATCTGAAAGCACACTAGATTCTGACATTGCATCGAAAGGTCGGATTTATCAC 465
Query 477 GAAACATATGGATGTCAGATGAACATAAACGACATGGAGATAGTCCTTGCGATAATGAAA 536
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 466 GAAACATATGGATGTCAGATGAACATAAACGACATGGAGATTGTCCTTTCGATAATGAAA 525
Query 537 AACTCTGGTTATAAAGAAGTAGTGACGGATCCTGAGAGCGCAGAAGTCATTTTCGTAAAC 596
||||| |||||||||||||||||||| ||||| |||||||| |||||||||||| | |||
Sbjct 526 AACTCCGGTTATAAAGAAGTAGTGACAGATCCCGAGAGCGCGGAAGTCATTTTCATTAAC 585
Query 597 ACTTGTGCTATCAGAGAAAATGCAGAGCAAAGAGTATGGCAAAGACTTAACTACTTTTGG 656
|||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 586 ACTTGTGCTATCCGAGACAATGCAGAACAAAGAGTATGGCAAAGACTTAACTACTTTTGG 645
Query 657 TTCTTAAAACGAGAATGGAAAGTAAATG-CTGCTACAGGAAGAGCAAAATCTCTCAAACC 715
||| ||||||||||||||||||| |||| | |||| ||||||||| |||||||||||||
Sbjct 646 TTCCTAAAACGAGAATGGAAAGTCAATGTC-GCTAAAGGAAGAGCGCAATCTCTCAAACC 704
Query 716 TCCTAAAGTTGTTGTTTTGGGATGTATGGCTGAAAGATT-AAAGGACAAGATTCTAGATT 774
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 705 TCCTAAAGTTGTTGTTTTGGGATGTATGGCTGAAAGATTGAAAG-ACAAGATTCTAGATT 763
Query 775 CTGATAAAATGGTTGATGTTGTTTGTGGTCCTGATGCTTATAGAGATCTCCCGAGGCTAT 834
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 764 CTGATAAAATGGTTGATGTTGTTTGCGGTCCTGATGCTTATAGAGATCTCCCGAGGCTAT 823
Query 835 TGGAAGAAGTAGACTATGGTCAAAAAGGAATCAACACTCTTCTTTCTCTAGAAGAGACTT 894
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TGGAAGAAGTAGACTATGGACAAAAAGGAATCAACACTCTTCTTTCTCTAGAAGAGACTT 883
Query 895 ATGCTGACATATCCCCTGTCCGAATCTCTGAAAACTCAATTACCGCTTTTGTTTCTGTTA 954
| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 884 ACGCCGACATATCCCCAGTCCGAATCTCCGAAAACTCAATTACCGCTTTTGTTTCAGTTA 943
Query 955 TGAGAGGCTGCAACAACATGTGTGCTTTCTGCATTGTTCCGTTTACCAGAGGCAGAGAGC 1014
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 944 TGAGAGGCTGCAACAACATGTGTGCTTTCTGCATTGTTCCGTTTACAAGAGGCAGAGAGC 1003
Query 1015 GATCACGTCCTGTAGAATCTATAATCCGCGAGGTTGGGGAGTTGTGGGAATCGGGTGTGA 1074
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1004 GATCACGTCCCGTCGAATCTATAATCCGCGAGGTTGGGGAGTTGTGGGAATCCGGTGTGA 1063
Query 1075 AAGAAGTTACGCTTTTAGGGCAAAATGTGAACAGCTATAACGATGATTCAGCTGATCGTG 1134
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 1064 AAGAAGTTACGCTTTTAGGACAAAATGTAAACAGCTATAACGATGATTCAGCTGATCCTG 1123
Query 1135 AGTCAGGTGCTAACTGGGAATACAGTGAGGGATTCTCGAGCCGGTGTAAAGTTAAAAACA 1194
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1124 AGTCAGGTGCTAACTGGGAGTACAGTGAGGGATTCTCGAGCAGGTGTAAAGTTAAAAACA 1183
Query 1195 TGGGTTTGCGATTTGCTGATCTCTTGGACCGACTCTCTGTAGAGTTTCCAGAGATGCGGT 1254
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1184 TGGGTTTGCGATTTGCTGATCTCTTGGACCGACTCTCTGTACAGTTCCCAGAGATGCGGT 1243
Query 1255 TTAGGTTTACATCGCCTCATCCTAAAGATTACCCTGACGAGTTGCTGTATTTGATGAGAG 1314
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1244 TTAGGTTTACATCGCCTCATCCTAAAGATTACCCGGACGAGTTGCTGTATTTGATGAGAG 1303
Query 1315 ATAGACATAATATCTGCAATCTCATCCATCTTCCTGCACAATCTGGTAATAGCAGAATAC 1374
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1304 ATAAACATAATATCTGCAATCTCATCCATCTTCCTGCACAGTCTGGTAATAGCAGAATAC 1363
Query 1375 TAGAACAAATGCGTAGAGGTTACACCAGAGAAGCTTATTTGGATCTTGTTAAAAAGATTC 1434
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1364 TTGAACAGATGCGTAGAGGTTACACCAGAGAAGCTTACTTGGATCTTGTTAAAAAGATTC 1423
Query 1435 GGAGTATTATACCAGATGTGGCTATAACCAGCGACTTTATAACTGGCTTCTGTGGAGAAA 1494
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 GGAGTATAATACCAGATGTGGCTATAACCAGCGACTTTATAACTGGCTTCTGTGGAGAAA 1483
Query 1495 CTGAAGAAGAGCATCAAGAAACCCTAAGCTTGGTGAGAGCAGTTGGATACGATATGGCGT 1554
| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1484 CCGAAGAAGAGCATGAAGAAACCCTAAGCTTGGTGAGAGCAGTTGGGTACGATATGGCAT 1543
Query 1555 ATATGTTTGCATACAGCATGAGAGAAAAGACACATGCTCATCGCAACTACACAGACGACG 1614
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1544 ATATGTTTGCATACAGCATGAGAGAAAAGACACACGCTCATCGCAAGTACACAGACGACG 1603
Query 1615 TTCCAGAGGAGGTGAAACAGAGACGTTTAACAGAACTCATCGACGCATTCCGCGAAACAA 1674
|||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1604 TTCCAGAGGAAGTGAAACAGAGGCGTTTAACAGAACTCATTGAAGCATTCCGCGAAACAA 1663
Query 1675 CAGGTCCGTGTTATGACTCTCAGGTAGGATCAACTCAGTTAGTTCTCGTCGAAGGACCAA 1734
||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct 1664 CAGGTCCGTGTTACGACTCTCAGGTAGGATCTATTCAGTTAGTTCTCGTCGAAGGACCGA 1723
Query 1735 ACAAGAGAGCGCCTGAGACAGAACTCATTGGAAAAACTGATAAAGGACACAGAGTTTCGT 1794
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1724 ACAAGAGAGCGCCTGAGACAGAACTCATTGGAAAAACCGATAAAGGACACCGAGTTTCGT 1783
Query 1795 TTGTCACGAAGCCTCTGTTTGATAAAGCGTGTCTTCTTGATGGTGATGATCTGAAGAGGA 1854
||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||
Sbjct 1784 TTGTCACAAAGCCTCTGTTTGATACAGCGTGTCTTCTTGATGGCGATGATCTGAAAAGGA 1843
Query 1855 ATCCTGGAATTGGGGATTTTGTTGAGGTTCAGATAGAGAAATCAACGAGGGCATCGTTGT 1914
|||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1844 ATCCTGAAATTGGGGATTTTGTGGAGGTTCGGATAGAGAAATCAACGAGGGCATCGTTGT 1903
Query 1915 TTGGGGAAGCTCTCGCGATTAGTAAAATGTCCTTGTTTCACGATGTTGGTGTCGTCGATG 1974
| || |||||||| ||||||| |||| | || |||||||||||||||||||||| |||
Sbjct 1904 TCGGAGAAGCTCTTGCGATTACTAAACTCTCATTGTTTCACGATGTTGGTGTCG---ATG 1960
Query 1975 CTGTTGTTGCGTCTTGTGCAAGTTAAGTTGAACTTCCGTTTTCTTTGTTTCGAAAGCCTT 2034
||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 1961 CTGGTGTTGCGTCTTGTGCAAGTTAAGTTAAACTTTGGTTTTCTTTGTTTCGAAAGC-TT 2019
Query 2035 TATACTTTTTCTTCTGTATACTTT 2058
||||||||||||| ||||||||||
Sbjct 2020 TATACTTTTTCTTGTGTATACTTT 2043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81208402340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5