BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36648.1 Length=2105 Score E Sequences producing significant alignments: (Bits) Value Ahg944213 jgi|Araly1|944213|scaffold_700442.1 296 4e-79 > Ahg944213 jgi|Araly1|944213|scaffold_700442.1 Length=236 Score = 296 bits (160), Expect = 4e-79 Identities = 214/238 (90%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 269 TACTGAGCTTTTGATGAGGTGATGAATGATGAATCCGTCAATTCTCT-ATGGAGCT--ag 325 |||||||||| |||| |||||| | || | | |||||||| | | |||||||| || Sbjct 230 TACTGAGCTTGTGATTAGGTGACG-AT--T---T-CGTCAATTAT-TGATGGAGCTAGAG 179 Query 326 agagatgagagggtgaagaagagagaagaagCTGATATGTGATATTGATGTGAGTTAAGT 385 ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 178 AGAGAGGAGAGATTGAAGAAGAGAGAAGAAGCTGATATGTGAAATTGATGTGAGTTAAGT 119 Query 386 TGATTGATGGATGTATGAGATGTTTATAGGGACGATATAGTTCTGCGTAAACATCTTTGT 445 |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 118 TGATTGATGGGTGTATGAGATGTTTAAAGGGACGATATAGTTCTGAATAAACATCTTTGT 59 Query 446 CATCCGACCTTTGCCATGACAGGTGCGCTTGCATGGCAGGTCACCAAAA-TCCTTAAT 502 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 58 CATCCGACCTTTGCCATGACAGGTGCGCTTGCATGGCAGGTCACCAAAAATCCTTAAT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79189619355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5