BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36670.1 Length=1770 Score E Sequences producing significant alignments: (Bits) Value Ahg490969 jgi|Araly1|490969|fgenesh2_kg.7__402__AT4G36670.1 2523 0.0 > Ahg490969 jgi|Araly1|490969|fgenesh2_kg.7__402__AT4G36670.1 Length=1711 Score = 2523 bits (1366), Expect = 0.0 Identities = 1527/1605 (95%), Gaps = 9/1605 (1%) Strand=Plus/Plus Query 3 TAAGACCT-AACTCTTAACGAACTTTTAGATAAAAGCTTATAACTGAGAGAGACATAGAT 61 ||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TAAGA-CTAAACTCTCAACGAACTTTTAGATAAAAGCTTATAATTGAGAGAGACATAGAT 59 Query 62 CGACAAAAGTCTCTATACCTTCTTGTAACGTGGTGGTTAATTAATCATGGCCGATC-AA- 119 ||| ||| |||||||||| |||| ||||||||||||| |||||||||||||||||| || Sbjct 60 CGATAAAGGTCTCTATACTTTCTGGTAACGTGGTGGTGAATTAATCATGGCCGATCAAAT 119 Query 120 -ATCTCCGGCGAGAAGCCGGCCGGAGTTAATAGATTCGCTCTTCAATGTGCTATCGTCGC 178 ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| Sbjct 120 TATCTCCGGCGAGAAGCCGGCCAGAGTTAATAGATTTGCTCTTCAATGTGCTATTGTCGC 179 Query 179 CTCCATCGTCTCCATCATCTTTGGTTACGATACTGGTGTTATGAGTGGAGCGATGGTGTT 238 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 180 CTCCATCGTCTCCATCATCTTCGGTTACGATACTGGGGTTATGAGTGGAGCGATGGTGTT 239 Query 239 TATAGAAGAAGATTTGAAGACAAACGACGTTCAAATAGAAGTTCTCACTGGAATTCTCAA 298 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 240 TATAGAAGAAGATTTGAAGACAAACGACGTTCAAATCGAAGTTCTCACCGGAATTCTCAA 299 Query 299 CCTTTGTGCCCTTGTCGGATCATTGCTCGCCGGAAGAACGTCGGACATAATCGGACGGCG 358 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 CCTTTGTGCCCTTGTCGGATCATTGCTAGCCGGAAGAACGTCGGACATAATCGGACGGCG 359 Query 359 TTACACAATCGTCTTGGCCTCAATACTATTCATGTTAGGCTCAATATTGATGGGTTGGGG 418 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 360 TTACACAATCGTCTTGGCCTCAATACTATTCATGTTGGGCTCAATAATGATGGGTTGGGG 419 Query 419 TCCGAATTATCCGGTTCTCCTATCCGGTAGATGCACCGCTGGACTCGGAGTCGGTTTTGC 478 ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 420 TCCAAATTATCCGGTGCTCCTATCCGGTAGATGCACCGCTGGACTCGGAGTTGGTTTTGC 479 Query 479 TCTGATGGTTGCTCCGGTTTACTCTGCCGAGATCGCAACTGCTTCACATAGAGGACTCTT 538 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 480 TCTGATGGTTGCTCCGGTTTACTCGGCCGAGATCGCAACTGCTTCACATAGAGGACTCTT 539 Query 539 AGCTTCTCTTCCTCACCTTTGTATCAGTATAGGGATTTTACTAGGTTATATCGTGAATTA 598 ||||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||| Sbjct 540 AGCTTCTCTGCCTCACCTTTGTATCAGTATCGGAATTTTACTAGGTTATCTCGTGAATTA 599 Query 599 CTTCTTCTCCAAGTTACCTATGCATATCGGTTGGAGACTCATGCTCGGTATAGCCGCGGT 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CTTCTTCTCCAAGTTACCTATGCATATCGGTTGGAGACTCATGCTCGGTATAGCCGCGGT 659 Query 659 TCCGTCCCTAGTGCTAGCGTTCGGGATCTTGAAAATGCCGGAATCTCCACGGTGGTTGAT 718 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TCCATCCCTAGTGCTAGCGTTCGGGATCTTGAAAATGCCGGAATCTCCACGGTGGTTGAT 719 Query 719 TATGCAAGGCCGTCTTAAGGAAGGCAAGGAGATATTGGAATTGGTATCTAATTCCCCTGA 778 ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 720 TATGCAAGGCCGTCTCAAGGAAGGCAAGGAGATATTGGGATTGGTATCGAATTCCCCTGA 779 Query 779 AGAAGCAGAACTCCGCTTTCAAGACATCAAAGCTGCTGCGGGAATCGACCCGAAATGCGT 838 |||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 780 AGAAGCGGAACTCCGCTTTCAAGACATCAAATCCGCTGCGGGAATCGACCCGAAATGCGT 839 Query 839 AGACGATGTTGTGAAAATGGAGGGTAAGAAGACTCATGGTGAAGGAGTGTGGAAAGAGCT 898 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 840 AGACGATGTTGTGAAAATGGAGGGTAAGAAGACTCATGGTGAAGGAGTGTGGAAAGAACT 899 Query 899 CATTCTAAGACCAACTCCTGCAGTGA-GACGTGTTCTTTTAACTGCTCTTGGGATTCATT 957 |||| |||||||||| || ||||| | |||| ||||||||||| |||||||| ||||||| Sbjct 900 CATTTTAAGACCAACCCCAGCAGT-ACGACGCGTTCTTTTAACCGCTCTTGGTATTCATT 958 Query 958 TCTTCCAACACGCCTCCGGAATCGAAGCAGTGCTTTTATACGGTCCGAGGATCTTTAAGA 1017 |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||| Sbjct 959 TCTTCCAACACGCCACCGGAATCGAAGCCGTGCTTTTATACGGTCCTCGGATCTTCAAGA 1018 Query 1018 AAGCAGGAATCACGACTAAAGACAAGCTTTTCTTGGTTACTATCGGTGTCGGAATCATGA 1077 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1019 AAGCAGGAATCACGACTAAAGACAAGCTTTTCTTGGTTACAATCGGTGTCGGAATCATGA 1078 Query 1078 AAACGACGTTTATTTTCACTGCGACTTTATTGTTAGACAAGGTAGGTCGAAGGAAGCTTT 1137 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1079 AAACGACGTTTATTTTCACAGCGACTTTATTGTTAGACAAGGTAGGTCGGAGGAAGCTTT 1138 Query 1138 TGTTGACCAGCGTTGGAGGAATGGTCATTGCGTTGACAATGTTGGGATTTGGGCTTACAA 1197 ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 1139 TGTTGACCAGCGTTGGAGGAATGGTGATTGCGTTGACAATGCTAGGATTTGGGCTTACCA 1198 Query 1198 TGGCCCAAAATGCTGGCGGGAAATTAGCGTGGGCTTTAGTACTGAGCATAGTTGCGGCTT 1257 ||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1199 TGGCCCAGAACGCTGGCGGGAAATTAGCGTGGGCTTTGGTACTGAGCATAGTCGCGGCTT 1258 Query 1258 ATAGTTTCGTGGCGT-TTTTCTCTATTGGGCTCGGCCCAATAACTTGGGTCTACAGTTCT 1316 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1259 ATAGTTTCGTGGC-TGTTTTCTCTATTGGGCTCGGCCCAATAACTTGGGTCTACAGCTCT 1317 Query 1317 GAGGTTTTCCCGTTGAAGCTTAGGGCACAAGGAGCGAGTCTCGGCGTTGCGGTGAACAGA 1376 ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1318 GAGGTTTTCCCGTTGAAACTTCGGGCCCAAGGAGCGAGTCTCGGCGTTGCGGTGAACAGA 1377 Query 1377 GTAATGAACGCCACCGTGTCGATGTCGTTTTTGTCGTTGACTAGTGCGATAACCACCGGT 1436 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 GTAATGAACGCCACCGTATCGATGTCGTTTTTGTCGTTGACTAGTGCGATAACCACCGGC 1437 Query 1437 GGAGCTTTCTTTATGTTCGCCGGAGTTGCGGCAGTGGCGTGGAATTTCTTCTTCTTCCTC 1496 || ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 1438 GGGGCTTTCTTTATGTTCGCCGGAGTCGCGGCGGTGGCTTGGAATTTCTTCTTCTTCCTC 1497 Query 1497 TTGCCGGAGACGAAAGGAAAATCACTTGAAGAAATCGAAGCGCTTTTTCAAAGAGACGGT 1556 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 TTACCGGAGACGAAAGGAAAATCACTTGAAGAAATCGAAGCGCTTTTTCAAAGAGACGGT 1557 Query 1557 GATAAAGTACGCGGCGAAAACGGTGCAGCTTAGCATGATGAATAT 1601 ||||||||||||||||||||| | ||||||||||||| ||||||| Sbjct 1558 GATAAAGTACGCGGCGAAAACAGCGCAGCTTAGCATGTTGAATAT 1602 Score = 159 bits (86), Expect = 5e-38 Identities = 103/111 (93%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 1661 TTTAGTTGTACTTTTGTGTGGCTTTTATCAAATTATAAATCAACGGTCAAGATTGACGCA 1720 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1602 TTTAGATGTACTTTTGTGTGGCTTTTATCAAATTATAAATCAACGGTCAAGATCGACGCA 1661 Query 1721 CGCTTTAGTAtttttttCAT-TAACAATTTAAGATCAACGGCTAATACATC 1770 | ||||| |||||||| || || ||||||||||||||||||||||||||| Sbjct 1662 CACTTTATTATTTTTT-CAAGTACCAATTTAAGATCAACGGCTAATACATC 1711 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66429387280 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5