BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36690.1 Length=1982 Score E Sequences producing significant alignments: (Bits) Value Ahg490965 jgi|Araly1|490965|fgenesh2_kg.7__398__AT4G36690.1 2854 0.0 > Ahg490965 jgi|Araly1|490965|fgenesh2_kg.7__398__AT4G36690.1 Length=1827 Score = 2854 bits (1545), Expect = 0.0 Identities = 1712/1790 (96%), Gaps = 21/1790 (1%) Strand=Plus/Plus Query 78 GAGAAAGAGATAGAGAGCGTTGATTCCGGCGAAAAGATGTCTGAATTCGAAGATCACGAG 137 |||| |||| |||| | |||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 GAGAGAGAGGTAGACAACGTTGATTCCGGCGAAAAGATGACTGAATTCGAAGATCACGAG 60 Query 138 GGAAACGGTACGGTTGCTGACGCGATTTACGAC-GAAGAGAATGGTGGCCGCGACGGCGA 196 ||||||||||| |||||||||||| |||||| | |||||||| |||||||||| |||||| Sbjct 61 GGAAACGGTACTGTTGCTGACGCGCTTTACG-CTGAAGAGAACGGTGGCCGCGGCGGCGA 119 Query 197 AATCGAGGATCAATTGGACTCGAAACCCaagagagaatcgcgtgaccatgaaagagagac 256 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 120 AATCGAGGATCAATTGGACTCGAAACCTAAGAGAGAATCGCGTGACCATGAAAGAGAGAC 179 Query 257 atcaagaagtaaagatagagaaagagagaagggtcgtgataaggacagagaaagagaCTC 316 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 180 ATCAAGAAGTAAAGATAGAGAAAGAGAGAAGGGTCGTGATAGGGACAGAGAAAGGGACTC 239 Query 317 TGAAGTCTCTCGCCGAAGCAGGGATAGAGATGGAGAGAAAAGCAAGGAGAGGAGTAGAGA 376 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 240 TGAAGTCTCTCGCCGAAGCAGGGATAGAGATGGAGATAAAGGCAAGGAGAGGAGTAGAGA 299 Query 377 CAAAGACAGAGATCATCGTGAGCGTCATCACAGAAGTAGTCGTCACAGGGATCATAGCAG 436 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 300 GAAAGACAGAG---ATCGTGAGCGTCATCACAGAAGTAGTCGTCACAGGGATCATAGTAG 356 Query 437 GGAGCGTGGTGAAAGAAGAGAACGTGGTGGTAGGGATGATGATGATTACCGTCGAAGCCG 496 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GGACCGTAGTGAAAGAAGAGAACGTGGTGGTAGGGATGATGATGATTACCGTCGAAGCCG 416 Query 497 TGATCGTGACCATGATAGGCGGAGAGATGATAGAGGAGGAAGACGCAGTCGTCGATCTCG 556 ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| Sbjct 417 TGATCGTGACCATGATAGGCGTAGAGATGATCGAGGAGGTAGACGCAGTCGTCGATCTCG 476 Query 557 ATCTCGTTCAAAGGATAGATCTGAGCGCAGAACAAGGTCACGATCTCCATCGAAAAGTAA 616 ||||||||||||||||||||| | | | |||||||||||||||||||| Sbjct 477 TTCTCGTTCAAAGGATAGATCT-------G----A-G---CGATCTCCATCGAAAAGTAA 521 Query 617 GCAGCGAGTCAGTGGATTCGATATGGCACCTCCAGCCTCTGCAATGTTAGCTGCTGGTGC 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 TAAGCGAGTCAGTGGATTCGATATGGCACCTCCAGCCTCTGCAATGTTAGCTGCTGGTGC 581 Query 677 TGCTGTTACAGGCCAAGTTCCTCCCGCTCCACCAACTCTTCCTGGGGCTGGAATGTTTCC 736 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 582 TGCTGTTACAGGTCAAGTTCCTCCCGCACCACCAACTCTTCCTGGGGCTGGAATGTTTCC 641 Query 737 CAACATGTTTCCATTGCCGACTGGACAGTCATTTGGGGGACTCTCTATGATGCCAATTCA 796 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 CAACATGTTTCCGTTGCCGACTGGACAGTCATTTGGGGGACTCTCTATGATGCCAATTCA 701 Query 797 GGCTATGACACAGCAGGCAACTAGACATGCTCGCAGAGTCTATGTCGGTGGGCTTTCCCC 856 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 702 GGCTATGACACAGCAGGCAACTAGGCATGCTCGCAGAGTCTATGTCGGTGGGCTTTCCCC 761 Query 857 TACGGCAAATGAACAGTCTGTGGCTACATTTTTTAGTCAAGTTATGGCTGCTGTTGGTGG 916 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 762 TACGGCAAATGAACAGTCCGTGGCTACATTTTTTAGTCAAGTTATGGCTGCTGTTGGTGG 821 Query 917 AAACACTGCTGGTCCAGGTGATGCAGTTGTTAATGTCTACATAAACCACGAGAAGAAGTT 976 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 TAACACTGCTGGTCCAGGTGATGCAGTTGTTAATGTCTACATAAACCACGAGAAGAAGTT 881 Query 977 TGCTTTTGTGGAGATGCGATCTGTTGAAGAGGCAAGTAACGCTATGTCTTTGGATGGGAT 1036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 TGCTTTTGTGGAGATGCGATCTGTTGAAGAGGCAAGTAACGCTATGTCTTTGGATGGGAT 941 Query 1037 TATATTTGAGGGAGCTCCGGTGAAGGTGAGGAGACCTAGTGACTATAACCCATCTCTAGC 1096 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 942 TATATTTGAGGGAGCTCCAGTGAAGGTGAGGAGACCTAGTGACTATAACCCATCTCTAGC 1001 Query 1097 TGCGACTCTTGGTCCAAGCCAGCCCAGTCCCCATCTAAACTTAGCTGCTGTTGGTCTGAC 1156 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 TGCAACTCTTGGTCCAAGCCAGCCCAGTCCCCATCTAAACTTAGCTGCTGTTGGTCTGAC 1061 Query 1157 TCCAGGTGCTTCTGGTGGGCTTGAGGGACCAGATCGTATTTTTGTTGGTGGACTTCCATA 1216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1062 TCCAGGTGCTTCTGGTGGGCTTGAGGGACCAGATCGTATTTTTGTTGGTGGACTTCCATA 1121 Query 1217 TTACTTCACGGAATCACAAGTGAGGGAGTTGTTGGAGTCCTTTGGAGGCCTCAAGGGCTT 1276 ||||||||| ||||| ||||| ||||||||||||||||||||||||| ||| |||||||| Sbjct 1122 TTACTTCACTGAATCCCAAGTCAGGGAGTTGTTGGAGTCCTTTGGAGCCCTTAAGGGCTT 1181 Query 1277 TGATCTTGTAAAAGATCGAGAAACAGGGAACTCTAAAGGATATGCCTTTTGTGTGTACCA 1336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 TGATCTTGTAAAAGATCGAGAAACAGGGAACTCTAAAGGATATGCCTTTTGTGTGTACCA 1241 Query 1337 AGATCTTTCTGTTACAGATATCGCGTGCGCTGCCCTAAATGGTATCAAGATGGGAGATAA 1396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 AGATCTTTCTGTTACAGATATCGCGTGCGCTGCCCTAAATGGTATCAAGATGGGAGATAA 1301 Query 1397 GACTCTTACAGTGAGACGTGCCAACCAGGGAACAATGCTACAAAAGCCTGAACAAGAGAA 1456 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1302 GACTCTTACAGTGAGACGTGCCAACCAGGGAACAATGCAACCAAAGCCTGAACAAGAGAG 1361 Query 1457 CGTATTATTGCATGCACAGCAGCAAATAGCTTTTCAGAGGGTTATGTTACAGCCTGGTGC 1516 ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1362 CGTATTATTGCATGCGCAGCAGCAAATTGCTTTTCAGAGGATTATGTTACAGCCTGGTGC 1421 Query 1517 AGTGGCAACCACTGTGGTGTGTCTGACTCAAGTTGTTACTGAGGATGAGCTTAGAGATGA 1576 | ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1422 AATGGCAACAACTGTGGTATGTCTGACTCAAGTTGTTACTGAGGATGAGCTTAGAGATGA 1481 Query 1577 TGAGGAGTATGGAGATATAATGGAAGACATGAGACAGGAAGGCGGAAAGTTTGGTGCTTT 1636 |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1482 CGAGGAGTATGAAGATATAATGGAAGACATGAGACAAGAAGGCGGAAAGTTTGGTGCTTT 1541 Query 1637 GACCAATGTTGTGATTCCGCGTCCAAGCCCCAATGGTGAGCCAGTGGCAGGCCTTGGCAA 1696 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1542 GACCAATGTTGTGATTCCGCGTCCAAGCCCCAATGGTGAGCCAGTGCCTGGCCTTGGCAA 1601 Query 1697 GGTGTTTTTGAAGTATGCCGATACAGATGGCTCGACTAGGGCAAGATTCGGGATGAATGG 1756 |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| Sbjct 1602 GGTGTTTTTGAAGTATGCCGATACAGATGGATCGACGAGGGCAAGAACCGGGATGAATGG 1661 Query 1757 TAGGAAATTTGGAGGAAATGAAGTCGTTGCAGTGTATTACCCTGAAGACAAGTTTGAACA 1816 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1662 TAGGAAATTCGGAGGAAATGAAGTCGTTGCAGTGTATTACCCTGAAGACAAGTTTGAACA 1721 Query 1817 GGGTGATTATGGAGCCTGATCACTT-CTTTGTTTGCTTTCTATTACTTAA 1865 |||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1722 GGGTGATTATGGAGCCTGATGACTTTCTTTGTTTGCTTTCTATTACTTAA 1771 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74504519220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5