BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36800.1
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944195 jgi|Araly1|944195|scaffold_700424.1 974 0.0
Ahg944194 jgi|Araly1|944194|scaffold_700423.1 132 6e-30
> Ahg944195 jgi|Araly1|944195|scaffold_700424.1
Length=598
Score = 974 bits (527), Expect = 0.0
Identities = 576/600 (96%), Gaps = 2/600 (0%)
Strand=Plus/Plus
Query 194 AGTTTCTTAAGAGAAGTCAGAAACAATGATTGGGTTGTTTAAAGTAAAGGAAAAGCAAAG 253
|||||||| | |||||| |||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1 AGTTTCTT-A-AGAAGTGAGAAGCAATGATTGGGTTATTTAAAGTTAAGGAAAAGCAAAG 58
Query 254 AGAACAAGCTCAAAATGCTACTAGAGGAGGAGCTTCTGTTAAGAAGCAATCTGCTGGCGA 313
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 59 AGAGCAAGCTCAAAATGCTACTAGAGGAGGAGCTTCTGTCAAGAAGCAATCTGCTGGGGA 118
Query 314 ACTTCGTCTTCACAAAGATATATCAGAGTTGAACCTTCCTAGCTCTTGTTCAATATCTTT 373
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 119 ACTTCGTCTTCACAAAGATATATCAGAGTTGAACCTTCCTAGCTCTTGTTCGATATCTTT 178
Query 374 TCCAAATGGCAAAGATGATTTGATGAACTTTGAAGTATCCATTAAACCTGATGATGGATA 433
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 179 CCCAAATGGAAAAGATGATTTGATGAACTTTGAAGTGTCCATTAAACCCGATGATGGATA 238
Query 434 TTACCACAATGGTACGTTTGTTTTCACATTCCAAGTCTCTCCTGTGTATCCACATGAAGC 493
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 CTACCACAATGGTACGTTTGTTTTCACATTCCAAGTTTCTCCTGTGTATCCACATGAAGC 298
Query 494 TCCAAAAGTTAAATGCAAAACCAAGGTTTATCATCCCAATATCGATTTGGAAGGAAACGT 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCCAAAAGTTAAATGCAAAACCAAGGTTTATCATCCCAATATCGATTTGGAAGGAAACGT 358
Query 554 TTGCCTGAACATCTTGCGTGAAGATTGGAAACCTGTTCTTAACATTAACACAGTTATCTA 613
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 359 TTGCCTGAACATCTTGCGTGAAGATTGGAAACCGGTTCTTAACATAAACACAGTTATCTA 418
Query 614 CGGACTCTTCCATCTGTTCACGGAACCCAATTCTGAAGATCCCTTGAACCATGATGCTGC 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGGACTCTTCCATCTGTTCACGGAACCCAATTCTGAAGATCCCTTGAACCATGATGCTGC 478
Query 674 AGCAGTTTTGAGGGATAACCCAAAGCTCTTTGAGACCAATGTTCGCAGGGCCATGACCGG 733
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 AGCAGTTTTAAGGGATAACCCAAAGCTGTTTGAGACCAATGTTCGCAGGGCCATGACCGG 538
Query 734 TGGATATGTCGGTCAGACCTTTTTCCCGCGTTGTATCTAACAAAGCTCTGGTTTGTCTTC 793
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 539 GGGATATGTTGGTCAAACCTTTTTCCCGCGCTGTATCTAACAAAGCTCTGGTTTGTCTTC 598
> Ahg944194 jgi|Araly1|944194|scaffold_700423.1
Length=196
Score = 132 bits (71), Expect = 6e-30
Identities = 111/128 (87%), Gaps = 12/128 (9%)
Strand=Plus/Minus
Query 23 TTATTGCAACCATTTCTCTGCTGTTTCTTCGTCGTTTAGCTTCAGAGGACGACAATCCGG 82
||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 176 TTATTGCAA-CATTTCTCTTCTGCTTCTTCGTCGTTTAGCTTCAGAGGACGACAATCCGG 118
Query 83 TAGGCgagagagagagaTTAATCAATCGGCGACCTTTTTAATTCGCTCGTAATTCGTTTT 142
| ||||||||||| | | | ||||||||||||||||||||||||||| ||||
Sbjct 117 TGGGCGAGAGAGA-A--T----C----GGCGACCTTTTTAATTCGCTCGTAATTTGTTTC 69
Query 143 GATTTTCG 150
||||||||
Sbjct 68 GATTTTCG 61
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39457219095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5