BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36810.1
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490952 jgi|Araly1|490952|fgenesh2_kg.7__385__AT4G36810.1 1888 0.0
Ahg480765 jgi|Araly1|480765|fgenesh2_kg.3__3466__AT2G18620.1 424 1e-117
Ahg931766 jgi|Araly1|931766|scaffold_304223.1 313 3e-84
> Ahg490952 jgi|Araly1|490952|fgenesh2_kg.7__385__AT4G36810.1
Length=1372
Score = 1888 bits (1022), Expect = 0.0
Identities = 1231/1325 (93%), Gaps = 42/1325 (3%)
Strand=Plus/Plus
Query 140 ATGGCTTCAGTGACTCTAGGTTCATGGATTGTTGTTCACCAC---CA-CA--ATCATCAT 193
|||||||||||||| |||||||||||||| |||||||||||| || || ||||||||
Sbjct 59 ATGGCTTCAGTGACACTAGGTTCATGGATCGTTGTTCACCACAATCATCATCATCATCAT 118
Query 194 CATC--CAT-C---TTCAATCCTT-ACCAAATCCAGATCCAGA------TCTT-GTC--C 237
|||| | | | |||||| ||| |||||||||||||||||| |||| || |
Sbjct 119 CATCATCTTCCTTGTTCAAT-CTTCACCAAATCCAGATCCAGATCTTCTTCTTCTTCTTC 177
Query 238 T---ATAACTCTTACTAAACCCATCTCCT-TTCGATCAAAACGCACCGTTTCATCATCTT 293
| |||||||||||||||||||||| || |||| ||||||||||||| || |||||||
Sbjct 178 TCCCATAACTCTTACTAAACCCATCT-CTCTTCGTTCAAAACGCACCG-TT--TCATCTT 233
Query 294 CTTCAATC--G-TTTCTTCTTCCGTTGTTACAAAAGAAGACAATCTACGCCAATCTGAAC 350
|||||||| | ||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 234 CTTCAATCGAGACTTCTTCTTCCGTTGTTACAAAAGAAGACAATCTCCACAAATCTGAAC 293
Query 351 CATCCTCTTTCGATTTCATGTCGTACATCATCACCAAAGCCGAATTAGTCAACAAAGCTT 410
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 294 CATCCTCTTTCGATTTCATGTCGTACATCATTACCAAAGCCGAATCAGTCAACAAAGCTT 353
Query 411 TAGATTCAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCACGAAGCGATGCGTTACTCTC 470
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 354 TAGATTCAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCACGAAGCCATGCGTTACTCTC 413
Query 471 TTCTCGCCGGTGGCAAAAGAGTTAGACCAGTTCTCTGCATCGCTGCTTGTGAACTCGTCG 530
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 414 TTCTCGCCGGTGGCAAAAGAGTTAGACCAGTTCTCTGCATCGCCGCTTGTGAACTCGTCG 473
Query 531 GAGGTGAAGAATCAACCGCTATGCCAGCAGCTTGCGCCGTCGAGATGATTCACACCATGT 590
| || || |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 474 GCGGCGATGAATCAACCGCTATGCCAGCGGCCTGCGCCGTCGAGATGATTCACACCATGT 533
Query 591 CGTTGATCCACGACGATCTCCCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGA 650
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CGTTGATCCACGACGATCTACCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGA 593
Query 651 CCAACCACAAAGTGTTTGGTGAAGACGTCGCTGTTTTAGCCGGAGACGCGCTTCTCTCTT 710
| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 594 CGAACCACAAAGTGTTCGGTGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTCTCTCGT 653
Query 711 TCGCTTTCGAGCATTTAGCTTCGGCGACGAGTTCTGATGTTGTTTCTCCGGTGAGAGTGG 770
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 654 TCGCTTTCGAGCATTTAGCGTCGGCGACTTCTTCTGATGTTGTATCTCCGGTGAGAGTGG 713
Query 771 TTCGAGCCGTTGGAGAATTGGCTAAAGCGATAGGAACAGAAGGGTTAGTGGCGGGTCAAG 830
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 714 TTCGAGCCGTTGGAGAATTGGCTAAAGCAATTGGAACAGAAGGGTTAGTGGCGGGTCAAG 773
Query 831 TCGTGGATATTAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCATTTGGAGT 890
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TCGTTGACATTAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCATTTGGAGT 833
Query 891 TTATCCATTTGCATAAAACGGCGGCGTTGCTTGAAGCTTCTGCTGTTTTGGGAGCTATTG 950
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |
Sbjct 834 TTATCCATTTGCATAAAACGGCGGCGTTGCTTGAAGCCTCTGCGGTTTTGGGAGCGATCG 893
Query 951 TTGGTGGAGGAAGTGATGATGAGATTGAGAGGTTAAGAAAGTTTGCGAGATGTATTGGTT 1010
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 894 TTGGTGGAGGAAGTGATGATGAGATCGAGAGGTTAAGGAAGTTTGCGAGATGTATTGGTT 953
Query 1011 TGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTAGGGA 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTAGGGA 1013
Query 1071 AAACTGCTGGGAAAGATTTGATTGCTGATAAGTTGACGTATCCTAAGATTATGGGTTTGG 1130
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1014 AAACTGCTGGGAAAGATTTGATTGCGGATAAATTGACGTATCCTAAGATTATGGGTTTGG 1073
Query 1131 AGAAATCGAGAGAGTTTGCTGAGAAATTGAATAGAGAGGCTCGTGATCAGCTTTTAGGGT 1190
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1074 AGAAATCGAGAGAGTTTGCTGACAAGTTGAATAGAGAGGCTCGTGATCAGCTTTTAGGGT 1133
Query 1191 TTGATTCTGATAAGGTTGCTCCTTTGTTGGCTTTGGCTAATTACATTGCCTATAGACAGA 1250
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTGATTCTGATAAGGCTGCTCCTTTGTTGGCTTTGGCTAATTACATTGCCTATAGACAGA 1193
Query 1251 ACTGATTTGTGTTC-GATTCCTTTTGTCGGGAATCATTATTAGATTGGAATTGTAGAAAT 1309
||||||| |||||| |||||||||||||||||||||||| || || ||||||||||||
Sbjct 1194 ACTGATT-GTGTTCCGATTCCTTTTGTCGGGAATCATTA---GACTGAAATTGTAGAAAT 1249
Query 1310 CTCGGACAGGTTCTCTAGAGTTTGTTGGTGTAATCATCTCTATGTTTTCATGTACTAAAA 1369
|||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1250 CTCGGACAGGTTCT--AGAGTTTGTTTGTGTAATCATCTCTATGTTTCCATGTACTAAAA 1307
Query 1370 AATT-TGGATAGTAATGGATGAAATATGAAGAGGTTCATGTGTCTGTAATAGAGTCCCTG 1428
|| |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1308 AAAACTGGATAGTAATGGATGCAATATTAAGAGGTTCATGTGTTTGTAATAGAGTCCCTG 1367
Query 1429 GTTGG 1433
|||||
Sbjct 1368 GTTGG 1372
> Ahg480765 jgi|Araly1|480765|fgenesh2_kg.3__3466__AT2G18620.1
Length=1014
Score = 424 bits (229), Expect = 1e-117
Identities = 481/600 (80%), Gaps = 28/600 (5%)
Strand=Plus/Plus
Query 665 TTT-GGTGAAGACGTCGCTGTTTTAGCCGGAGACGCGCTTCTCTCTTTCGC-TTTCGAGC 722
||| || ||||||||||| ||||||||||||||||||||| | |||||||| ||| ||||
Sbjct 426 TTTCGGCGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTTTATCTTTCGCGTTT-GAGC 484
Query 723 ATTTAGCT-TCGGCGACGAGTTCTGATGTTGTTTCTCCGGTGAGAGTGGTTCGAGCCGTT 781
|||||| | ||| ||| | | || || ||||||||| ||||||||||||||| ||
Sbjct 485 ATTTAG-TGACGGAGAC--G-CCGGAAATTATTTCTCCGGCGAGAGTGGTTCGAGCAATT 540
Query 782 GGAGAATTGGCTAAAGCGATAGGAACAGAAGGG-TTAGTGGCGGGTCAAGTCGTGGATAT 840
|||||||| || ||||| || ||| |||||||| || ||||||||||||||||||||| |
Sbjct 541 GGAGAATTAGCGAAAGCTATTGGATCAGAAGGGCTT-GTGGCGGGTCAAGTCGTGGATCT 599
Query 841 TAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCATT-TGGAGTTTATCCA-T 898
| |||||||| | || |||||||||||| ||||||| || | |||||||||||
Sbjct 600 AACCAGTGAAGGAATGGACCAAAACGACGTCGGATTAGAGC-TTCTTGAGTTTATCCACG 658
Query 899 TTGCATAAAACGGCGGCGTTGCTT-GAAGCTTCTG-CTGTTTTGGGAGCTATTGTTGGTG 956
|| |||||||| || | |||| || || || | | | || || || || || || || |
Sbjct 659 TT-CATAAAACCGCCGTGTTG-TTAGAGGCGGC-GACGGTGTTAGGTGCCATCGTCGGCG 715
Query 957 GAGGAAGTGATGATGAGATTGAGAGGTTAAGAAAGTTTGCGAGATGTATTGGTTTGTTGT 1016
| |||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 716 GTGGAACTAATGAAGAGATTGAGAGGTTAAGGAAGTTTGCGAGATGTATTGGTTTGTTGT 775
Query 1017 TTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTAGGGAAAACTG 1076
|||||||||| || | ||| |||||||||||||| |||||| | || || |||||||| |
Sbjct 776 TTCAGGTGGTGGACGGTATTTTGGATGTGACGAAGTCGTCGGAGGAATTGGGGAAAACCG 835
Query 1077 CTGGGAAAGATTTGATTGCTGATAAGTTGACGTATCCTAAGATTA-TGGGT-TTGGAGAA 1134
| |||||||||||||| || | |||| |||||||||| || | || ||| | ||| ||||
Sbjct 836 CCGGGAAAGATTTGATCGCCGGTAAGCTGACGTATCCGAA-ACTAATGGCTCTTG-AGAA 893
Query 1135 ATCGAGAGAGTTTGCTGAGAAATTGAAT-AGAGAGGCTCGTGATCAGCTTTTAGGG-TTT 1192
||| | ||| ||||| || ||||| | | ||||| |||| || || ||| | || |||
Sbjct 894 ATCTAAAGACTTTGCAGATAAATT-ATTGAGAGATGCTCAAGAACAACTTC-ATGGATTT 951
Query 1193 GATTCTGA-TAAGGTTGCTCCTTTGTTGGCTTTGGCTAATTACATTGCCTATAGACAGAA 1251
||||| || ||| ||| ||||| || ||||||||||||||||||| | | ||||||||
Sbjct 952 GATTC-GAATAAAGTTAAACCTTTATTAGCTTTGGCTAATTACATTGGCAAAAGACAGAA 1010
> Ahg931766 jgi|Araly1|931766|scaffold_304223.1
Length=1252
Score = 313 bits (169), Expect = 3e-84
Identities = 622/835 (74%), Gaps = 54/835 (6%)
Strand=Plus/Plus
Query 358 TTTCGATTTCATGTCGTACATCATCACCAAAGCCGA-ATTAGTCAACAAAGCTTTAGATT 416
||||| ||||| ||||||| |||| ||||| || | | | |||| ||| ||||
Sbjct 347 TTTCGGTTTCAAACCGTACATGATCAGGAAAGCAGAGA-CAATAAACAGAGCACTAGACA 405
Query 417 CAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCACGAA-GCGATGCGTTACTCTCTTCTC 475
||| |||| ||| |||||| ||||| ||| || || || ||||||||| | || ||
Sbjct 406 AAGCCATTCCACTCATTGAGCCTCTCAACATCTAC-AAGGCAATGCGTTACACGATTTTC 464
Query 476 GCCGGTGGCAAAA-GAGTTAGACCAGTTCTCTGCATCGCTGCTTGTGAACTCGTCGGAGG 534
|| || || |||| | ||||| ||| | |||||| |||| ||||| || || || || ||
Sbjct 465 GCAGGCGG-AAAACGCGTTAGGCCAATACTCTGCCTCGCCGCTTGCGAGCTAGTGGGCGG 523
Query 535 TGAAGAATC-AACCGCTATGCCAGCAGCTTGCGCCGTCGAGATGATTCACACCATGTCGT 593
| || | | | || || ||||| |||| | || || |||||||| || |||||
Sbjct 524 GGGAG-AGCGTTCAGCGATTCCAGCGGCTTTTTCGGTTGAAATGATTCATACAATGTCAC 582
Query 594 TGATCCACGACGATCTCCCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGACCA 653
| ||| | |||||||| ||||||||||| |||||||||||||| || || ||||| | ||
Sbjct 583 TAATCAAAGACGATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGTAAACC-AACA 641
Query 654 AC-CACAAAGTGTTTGGTG-AAGACGTCGCTGTTTTAGCCGGAGACGCGCTTCTCTCTTT 711
|| |||||||| || || | ||| || ||| || | |||| | ||| ||| | || |
Sbjct 642 ACACACAAAGTATTCGGAGAAAG-TGTAGCTATTCTCTCCGGCGGCGCACTTTTAGCTCT 700
Query 712 CGCTTTCGAGCATTTAGCTTCGGCGACGAGTTCTGATGTTGTTTCTCCGGTGAGAGTGGT 771
|||||||||||||| | | | || || |||| | ||| | ||| || | ||||
Sbjct 701 AGCTTTCGAGCATTT-G--AC-G-GA--AG--CTGACG-TGTCT-TCC-AAGAAAATGGT 748
Query 772 TCGAGCCGTTGGAGAATTGGCTAAAG-CGATAGGAACAGAAGG-GTTAGTGGCGGGTCAA 829
||||| |||| |||||||||| ||| | || |||||| |||| || |||||||| |||
Sbjct 749 TCGAGTCGTTAAAGAATTGGCT-AAGTCTATTGGAACAAAAGGACTT-GTGGCGGGACAA 806
Query 830 GTCG-TGGATATT-AGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCAT-TTG 886
| || ||||| || || ||||||||| | ||| ||||||| || | |||||| || ||
Sbjct 807 G-CGATGGAT-TTAAGCAGTGAAGGGCTGGATCCAAACGACTTCAGATTAGAGGATCTT- 863
Query 887 GAGTTTATCCA-TTTGCATAAAAC-GGCGGCGTTGCTTGAAGCTTCTGCTGTTTTGGGAG 944
|| | ||| || || |||||||| || |||||||||||||| || || ||| | ||||
Sbjct 864 GAATATATTCACGTT-CATAAAACAGG-TGCGTTGCTTGAAGCATCAGCGGTTATCGGAG 921
Query 945 CTATTGTTGGTGGAGGAAGTGATGATGAGATTGAG-AGGTTAAGAAAG-TTTGCGAGATG 1002
| || |||| || ||| || || ||||| ||| ||| | || ||| |||||||| ||
Sbjct 922 CGGTTATTGGCGGTGGATCAGAGGAAGAGATAGAGAAGG-TGAG-AAGCTTTGCGAGGTG 979
Query 1003 TATTGGTTTGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGA 1062
|||||| |||||||||||||||||||||||||||||||||| ||| || || ||| | ||
Sbjct 980 TATTGGATTGTTGTTTCAGGTGGTTGATGATATCTTGGATGAGACCAAGTCCTCGGAGGA 1039
Query 1063 GTTAGGGAAAA-CTGCTGGGAAAGATTTGATTGCTG-ATAAGTTGACGTATCCTAAGATT 1120
|| ||||||| | || || |||||| | | || | | ||| | |||||||| | || |
Sbjct 1040 ATT-GGGAAAAACCGCCGGAAAAGATAAGGTCGCCGGA-AAGCTAACGTATCCGA-GAGT 1096
Query 1121 -ATGGGT-TTGGAGAAATCGAGAG-AGTTTGCTGAGAAA-TTGAATAGAGAGGCT 1171
|| ||| ||| ||||||| | || |||||| ||| ||| ||||||||||| |||
Sbjct 1097 GATTGGTCTTG-AGAAATCTA-AGGAGTTTG-TGAAAAAGTTGAATAGAGAAGCT 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5