BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36900.1
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944141 jgi|Araly1|944141|scaffold_700370.1 942 0.0
Ahg489689 jgi|Araly1|489689|fgenesh2_kg.6__2823__AT4G06746.1 143 3e-33
> Ahg944141 jgi|Araly1|944141|scaffold_700370.1
Length=638
Score = 942 bits (510), Expect = 0.0
Identities = 599/640 (94%), Gaps = 13/640 (2%)
Strand=Plus/Plus
Query 184 TCTCCGGAGAAAACCACTATGGAGACGGCGACTGAAGTGGCCACGGTGGTGTCAACTCCG 243
||||||| |||||||| |||||||||||||||||||||||| ||||| || || ||||||
Sbjct 4 TCTCCGGCGAAAACCA-TATGGAGACGGCGACTGAAGTGGCGACGGTTGTTTCTACTCCG 62
Query 244 GCGGTTACGGTTGCGGCGGTGGCGACGAGGAAGAGAGATAAGCCGTATAAAGGGATAAGG 303
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 63 GCGGTTACGGTTGCGGCGGCGGCGACGAGGAAGAGGGAGAAGCCGTATAAAGGGATAAGG 122
Query 304 ATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATAAGAGAGCCTAATAAAAGGTCAAGGATC 363
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 123 ATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATAAGAGAGCCTAATAAACGGTCAAGGATC 182
Query 364 TGGCTTGGCTCTTACTCTACTCCTGAAGCGGCGGCGCGTGCTTACGACACGGCGGTGTTT 423
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 183 TGGCTTGGCTCTTACTCTACTCCTGAAGCGGCGGCGCGAGCTTATGACACGGCCGTGTTT 242
Query 424 TATCTCCGAGGTCCTTCTGCTCGGCTTAACTTCCCGGAGCTTTTAGCCGGAGTGACGGT- 482
||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||
Sbjct 243 TATCTCCGAGGTCCTTCCGCTCGGCTTAACTTCCCGGAGCTTCTAGCCGGAGTTACCGTT 302
Query 483 GACGGGAGGAGGCGGAGGAGGAGTGAA-CGGTGGTGGAGATATGTCGGCGGCGTATATAA 541
| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 303 G-CGGGAGGTGGCGGAGGAGGAG-GAAACGGTGGTGGAGATATGTCGGCGGCGTATATAA 360
Query 542 GGAGAAAAGCGGCGGAGGTTGGAGCACAAGTGGATGCGTTAGAAGCGGCGGGGGCGGGAG 601
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 GGAGAAAAGCGGCGGAGGTTGGAGCTCAAGTGGATGCGTTAGAAGCGGCGGGGGCGGGAG 420
Query 602 GGAATCGtcatcatcatcatcatca--a-catcaAC---GTGGTAATCATGATTACGTAG 655
||||||||||||||||||||||||| | ||||||| |||||||||||||||| | ||
Sbjct 421 GGAATCGTCATCATCATCATCATCATCATCATCAACAACGTGGTAATCATGATTATGGAG 480
Query 656 ATAATCATAGTGATTATCGTATTAATGATGATCTTATGGAGTGTAGTAGTAAAGAAGGGT 715
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 481 ACAATCTTAGTGATTATCGTATTAATGATGATCATATGGAGTGTAGTAGTAAAGAAGAAT 540
Query 716 TTAAGAGGTGTAATGGATCGTTGGAACGGGTTGATTTAAACAAATTACCCGATCCGGAAA 775
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TTAAGAGGTGTAATGGATCGTTGGAACGGGTTGATTTGAACAAATTACCCGATCCGGAAA 600
Query 776 CTTCAGATGACGATTAGGAAAGCAAAAAATAGAAACAAAT 815
|||||||||| |||||||||| ||||| |||||||||||
Sbjct 601 CTTCAGATGATGATTAGGAAAT-AAAAA-TAGAAACAAAT 638
> Ahg489689 jgi|Araly1|489689|fgenesh2_kg.6__2823__AT4G06746.1
Length=544
Score = 143 bits (77), Expect = 3e-33
Identities = 124/147 (84%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 292 AAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATAAGAGAGCCTAATAAA 351
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 109 AAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATAAGAGAGCCTAACAAA 168
Query 352 AGGTCAAGGATCTGGCTTGGCTCTTACTCTACTC-CTGAAGCGGCGGCGCGTGCTTACGA 410
| ||| ||||||||||||| |||||| || | | | || ||||| ||||| || ||
Sbjct 169 CGATCACGGATCTGGCTTGGTTCTTACAAAAC-CGCGGTTGCAGCGGCACGTGCCTATGA 227
Query 411 CACGGCGGTGTTTTATCTCCGAGGTCC 437
||| || ||||||||| | || |||||
Sbjct 228 CACCGCTGTGTTTTATTTACGTGGTCC 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5