BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36920.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490899 jgi|Araly1|490899|fgenesh2_kg.7__332__AT4G36920.1 2276 0.0
> Ahg490899 jgi|Araly1|490899|fgenesh2_kg.7__332__AT4G36920.1
Length=1593
Score = 2276 bits (1232), Expect = 0.0
Identities = 1487/1600 (93%), Gaps = 58/1600 (4%)
Strand=Plus/Plus
Query 1 CATTAAAGTTTTTATTTT-ATTTTCTACCAACCAAAAGCTTTTCTCTTTGGTTTCTCTTA 59
|||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATT-AATTTTTTTTTTTAATTTTCTACCAACCAAAAGCTTTTCTCTTTGGTTTCTCTTA 59
Query 60 TTTAGCTTCTAACCTTGAGGAGAATCATACCAGAGGATTGAAGTTTGAACCTTCAAAGAT 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 TTTAGCTTCTAACCTTGAGGAGAATCAAACCAGAGGATTGAAGTTTGAACCTTCAAAGAT 119
Query 120 CAAAATCAAGAAACCaaaaaaaaacaaaaaaaaTGTGGGATCTAAACGACGCACCACACC 179
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 CAAAATCAAGAAAACAAAAAAAAAAAAAAAAAATGTGGGATCTAAACGACGCACCACACC 179
Query 180 AAACAC--AAAG-AGAAGAAGAATCTGAAGAGTTTTGTTATTCTTCACCAAGTAAACGGG 236
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAACACTTAGAGAAGAAGAAGAATCTGAAGAGTTTTGTTATTCTTCACCAAGTAAACGGG 239
Query 237 TTGGATCTTTCTCTAATTCAAGCTCTTCAGCTGTTGTTATCGAAGATGGATCCGATGACG 296
| |||||||||||||||||||| || || |||||||| ||||||||||||||||||||||
Sbjct 240 TCGGATCTTTCTCTAATTCAAGTTCCTCTGCTGTTGTCATCGAAGATGGATCCGATGACG 299
Query 297 ATGAACTTAACCGGGTCAGACCCAATAACCCACTTGTCACCCATCAGTTCTTCCCTGAGA 356
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 ATGAACTTAACCGGGTCAGACCCAATAACCCACTTATCACCCATCAGTTCTTCCCTGAGA 359
Query 357 TGGATTCTAACGGC------------GGTGGTGTTGCTTCTGGCTTTCCTCGGGCTCACT 404
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 TGGATTCTAACGGCGGTGGAGGAGATGGTGGTGTTGCTTCTGGCTTTCCTCGGGCTCACT 419
Query 405 GGTTTGGTGTTAAGTTTTGTCAGTCGGATCTAGCCACCGGATCGTCCGCGGGTAAAGCTA 464
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 GGTTTGGTGTTAAGTTTTGTCAGTCGGATCTAGCCACCGGATCGTCGGCGGGTAAAGCTG 479
Query 465 CCAACGTTGCCGCTGCCGTAGTGGAGCCGGCACAGCCGTTGAAAAAGAGTCGGCGTGGAC 524
||| ||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 480 CCACCGTAGCCGCTGCCGTGGTGGAGCCGGCGCAGCCGTTGAAAAAGAGCCGGCGTGGAC 539
Query 525 CAAGATCAAGAAGTTCTCAGTATAGAGGTGTTACGTTTTACCGGCGTACCGGAAGATGGG 584
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 540 CAAGGTCAAGAAGTTCTCAGTATAGAGGCGTTACGTTTTACCGGCGTACTGGAAGATGGG 599
Query 585 AATCTCATATTTGGGACTGTGGGAAACAAGTTTACTTAGGTGGATTTGACACTGCTCATG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATCTCATATTTGGGACTGTGGGAAACAAGTTTACTTAGGTGGATTTGACACTGCTCATG 659
Query 645 CAGCAGCTCGAGCATATGATAGAGCTGCTATTAAATTCCGTGGAGTAGAAGCGGATATCA 704
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAGCTGCTCGAGCATATGATAGAGCTGCTATTAAATTCCGTGGAGTAGAAGCGGATATCA 719
Query 705 ATTTCAACATCGACGATTATGATGATGACTTGAAACAGATGACTAATTTAACCAAGGAAG 764
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 ATTTCAACATCGAAGATTATGATGATGACTTGAAACAGATGACCAATTTAACCAAGGAAG 779
Query 765 AGTTCGTACACGTACTTCGCCGACAAAGCACAGGCTTCCCTCGAGGAAGTTCGAAGTATA 824
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 AGTTCGTACACGTACTTCGCCGACAAAGCACAGGCTTCCCTCGAGGAAGTTCTAAGTATA 839
Query 825 GAGGTGTCACTTTGCATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCA 884
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 GAGGTGTTACTTTGCATAAGTGTGGTCGATGGGAAGCTCGAATGGGTCAATTCTTAGGCA 899
Query 885 AAAAGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGAGCTTACGATA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAAAGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGAGCTTACGATA 959
Query 945 AAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACG 1004
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 AAGCTGCAATCAAATGTAATGGCAAAGACGCCGTGACTAACTTTGATCCGAGTATTTACG 1019
Query 1005 ATGAGGAACTCAATGCCGAGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCG 1064
| |||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1020 ACGAGGAACTCAATGCTGAGTCATCAGGGAATCCTACT-C-C-ACAAGATCACAACCTCG 1076
Query 1065 ATTTGAGCTTGGGAAATTCGGCTAATTCGAAGCATAAAAGTCAAGATATGCGGCTCAGGA 1124
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1077 ATTTGAGTTTGGGAAATTCGGCTAATTCGAAGCATAAGAGTCAAGATATGCGGCTCAAGA 1136
Query 1125 TGAACCAACAACAACAAGATTCTCTCCACTCTAATGAAGTTCTTGGATTAGGTCAAACCG 1184
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1137 TGACCCAACAACAACAAGATTCTCTCCACTCTAATGAAGTTCTCGGATTAGGTCAAACCG 1196
Query 1185 GAATGCTTAACCATACTCCCAATTCAAACCACCAATTTCCGGGCAGCAGCAACATTGGTA 1244
||||||||||||| | | || | | ||||||||||| |||||||
Sbjct 1197 GAATGCTTAACCA-A-T-----TT-----------T--C-GGGCAGCAGCAGCATTGGTG 1235
Query 1245 GCGGAGGCGGATTCTCACTGTTTCCGGCGGCTGAGAACCACCGGTTTGATGGTCGGGCCT 1304
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1236 GCGGAGGCGGATTCTCACTGTTTCCGGTGGCTGAGAACCACCGGTTTGATGATCGGGCCA 1295
Query 1305 CGACGAACCAAGTGTTGACAAATGCTGCAGCATCATCAGGATTCTCTCCTCATCATCACA 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1296 CGACGAACCAAGTGTTGACAAATGCTGCAGCATCATCAGGATTCTCTCCTCATCATCATA 1355
Query 1365 ATCAGATTTTTAATTCTACTTCTACTCCTCATCAAAATTGGCTGCAGACAAATGGCTTCC 1424
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1356 ATCAGATTTTTAATTCTACTTCTTCTTCTCATCAAAATTGGCTGCAGACAAATGGCTTCC 1415
Query 1425 AACCTCCTCTCATGAGACCTTCTTGAATCTTTTATATTTTTAAGGTTTATTATTATATAA 1484
|||||||||||||||||||||||||||||||| || | | || || || ||| |
Sbjct 1416 AACCTCCTCTCATGAGACCTTCTTGAATCTTT-AT-T----A---TT-AT-AT-ATA-A- 1461
Query 1485 GAAAAACAAAAATGAACCTTTGAAATC-CCCACATGTTCTTGGTCATTTCATTAATCATC 1543
|||||| ||||||||||||||||| || |||| || |||||||||||| |||||||| ||
Sbjct 1462 GAAAAAAAAAAATGAACCTTTGAA-TCTCCCATATTTTCTTGGTCATTCCATTAATCGTC 1520
Query 1544 GGCTTATATTTTGCTTATTTTCCCCTAAATCCTCTTGTTA 1583
||||||| ||||| ||||| ||| |||| ||||||||||
Sbjct 1521 GGCTTATCTTTTGTTTATTG-CCCTTAAAACCTCTTGTTA 1559
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1599 aaaaaTTAATGGAAATCTTTTTCCCTCCATCGG 1631
|||||||||||||||||||||||||||||||||
Sbjct 1561 AAAAATTAATGGAAATCTTTTTCCCTCCATCGG 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5