BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36980.4 Length=1984 Score E Sequences producing significant alignments: (Bits) Value Ahg490906 jgi|Araly1|490906|fgenesh2_kg.7__339__AT4G36980.2 2318 0.0 > Ahg490906 jgi|Araly1|490906|fgenesh2_kg.7__339__AT4G36980.2 Length=2065 Score = 2318 bits (1255), Expect = 0.0 Identities = 1450/1543 (94%), Gaps = 17/1543 (1%) Strand=Plus/Plus Query 12 AGCTAATTAGGGTTTCTTCTGAGCTTAGAGAGC-A--A---G-G-ACAAGATGTGGCACG 63 ||||||||||||||||||||||||| ||||| | | | | | ||||||||||||||| Sbjct 1 AGCTAATTAGGGTTTCTTCTGAGCTAAGAGACCAAGGAGGTGAGAACAAGATGTGGCACG 60 Query 64 AAGCGAGAAGATCGGAGAAGAAGGTTCACGATATGATGGACGCTGCTCGGAAAAGAGCAC 123 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 AAGCGAGAAGATCGGAGAAGAAGGTGCACGATATGATGGACGCTGCTCGGAAAAGAGCAC 120 Query 124 AGCGGCGAGCTATTTACTTAGCTAAACGCCGTGGAGATCCTATTCAGTCGATTCAAGCCG 183 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGCGGCGAGCTATTTACTTGGCTAAACGCCGTGGAGATCCTATTCAGTCGATTCAAGCCG 180 Query 184 TTGGTTCCCGCTACCGAGTATTCCGTGATGATGGTCTTTACCAAGCCACCGAAGATCAAC 243 ||||||| ||||||||| | ||||| |||||||||||||||||||||||||| ||||||| Sbjct 181 TTGGTTCTCGCTACCGAATCTTCCGCGATGATGGTCTTTACCAAGCCACCGAGGATCAAC 240 Query 244 AGGGCTTGATTCCTTGGAATGGGAAGCAAGATGTTATGATTGATAGATTTGATGGTCGTG 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGGGCTTGATTCCTTGGAATGGGAAGCAAGATGTTATGATTGATAGATTTGATGGTCGTG 300 Query 304 CTCTTCTGGATTTTGTGCGTGAGGCTGGTTCGAGAAGTGTACGTCCACATAAGAAAACGG 363 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 301 CTCTTCTGGATTTTGTGCGTGAGGCTGGTTCGAGAAACATACGTCCACATAAGAAAACGG 360 Query 364 AAGAGGAAGAAGAACTTGAAGAGTTTGTTAATTTTGAGCGTTATCGGGATTTGATTAAGC 423 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAGAGGAGGAAGAACTTGATGAGTTTGTTAATTTTGAGCGTTATCGGGATTTGATTAAGC 420 Query 424 ATCGGCGTAGAGGATTTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGG 483 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 421 ATCGCCGTAGAGGATTTTCTGATGAGGAGGGTTTGCTTCATGTCCATCAAGAGCACGAGG 480 Query 484 CCAAACTTGCTGCTCCCTTCCTTGGGACAAGAACACAACCAGCTCAACCACCTGCAAACA 543 ||||||||||||||||||||| ||| | ||| |||| ||||||||||||||||||||| Sbjct 481 CCAAACTTGCTGCTCCCTTCCCAGGGGCTAGATCACAGGCAGCTCAACCACCTGCAAACA 540 Query 544 AAGGCACATATTCGCAGGTTGGATTTTCTTATGCTGGAAATGGCAAAGATAATTCATTGG 603 |||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| Sbjct 541 AAGGCACATATTCGCAGGTTGGATTTTCTTATACTGGAAACGGAAAAGATAATTCATTGG 600 Query 604 ATGCGGACGAAGATGATGTTGATGACGACGAGGATGATGAGGATGAAGAGGAAGAATTTG 663 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 ATGCAGACGAAGATGATGTTGATGACGACGAGGATGATGAGGATGAAGAGGAAGAATTTG 660 Query 664 ACAGTAATGACAGTGATGATGAAGGAATGGAAACAATTGCGAAACAGTTTGGTATTAAGC 723 ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 661 ACAGTAATGACAGCGATGATGAAGGAATGGAAACAATTGCAAAACAGTTTGGCGTTAAGC 720 Query 724 GATATGGGTGGCTTGTTTATATGGACAAGAAGGCAAAAGAGGAAGAGAAAAGGCAAAAGG 783 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 721 GATATGGGTGGCTTGTTTATATGGACAAGAAGGCAAAAGAGGAAGAGAAAAGGCAGAAGG 780 Query 784 AACTCATCAAAGGCGATCCTTCAATTAAGAAACTAAGTCGCAAGGAGAGAAGAAAAGTTT 843 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 781 AACTCATCAAAGGCGATCCTTCAATTAAGAAACTAAGTCGCAAGGAAAGAAGAAAAGTTT 840 Query 844 CTAGGATAGAGAGGGATAGAGAAAGGGAAACTTCAAGGAGTGTCGGAAGGCAAATAATTC 903 ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct 841 CTAGGATAGAGAGGGATAGGGAAAGAGAAACTTCAAGGAGTGTTGGAAGGCAAATAATTC 900 Query 904 ATCATGATCCATACAGGGAGTCTCGAAGGAGTCCTACTTATGAGGCCTATCCGCGTTCAA 963 |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 901 ATCATGATCCTTACAGGGAGTCCCGAAGGAGTCCTACTTATGAGGCTTATCCGCGTTCAA 960 Query 964 GAAGATCAAGATCCAGATCCCGCTCATATTCTCCATCATACTCAAGGAGAAATGGGCGTG 1023 |||||||||||||||||||||| || |||||||||||||||||| || | |||||||||| Sbjct 961 GAAGATCAAGATCCAGATCCCGGTCGTATTCTCCATCATACTCACGGCGGAATGGGCGTG 1020 Query 1024 GAGACCATTCTGATGAAATCAGCAAACCAAAAATCGAATATATTACGGAATTTGGAGGAG 1083 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1021 GAGACCATTCTGATGAAATCAGCAAACCAAAAATCGAATATATTACAGAATTTGGAGGAG 1080 Query 1084 GCTCTGGAGATATGAGAAGTCCAAAGTTTGAAGGATATTCCCCACCGCGTTCACCACCAT 1143 ||||||||||| || |||||| ||||| ||||||||||||||||||| ||||||||||| Sbjct 1081 GCTCTGGAGATGTGGGAAGTCTGAAGTTCGAAGGATATTCCCCACCGCATTCACCACCAT 1140 Query 1144 CTCAGTCTGATCTATTAAGCCGACCATCGCCAGGCCGTATTCTTGAGGCGCTGCATGTTG 1203 |||||||||| ||||| |||||||||||||| |||| ||||||||||||| ||||||||| Sbjct 1141 CTCAGTCTGACCTATTGAGCCGACCATCGCCGGGCCATATTCTTGAGGCGTTGCATGTTG 1200 Query 1204 ATCCTGCATCTGATATATCCCTTGAGAAAGACAA-AGTTGCCAAACCAGCAAAATCGACA 1262 |||||||||||| | |||| |||||||||||||| | ||| ||| ||| ||| | ||| Sbjct 1201 ATCCTGCATCTGGTGTATCTCTTGAGAAAGACAAGA-TTGTTAAAACAGTTAAACCAACA 1259 Query 1263 GTGAGTACTTCCACAGCACTAGCGAAGCTTTCAAAAGTAGCAGGTACCTCCTCTTCGAAG 1322 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 1260 GTGAGTACTTCCACGGCACTAGCGAAGCTTTCAAAAG---CAGGTACCTCCTCTTCGAAG 1316 Query 1323 CAGTCACAAGCAGAGAAGAAAGAAACTCCCCAAGAACGACTGAAGAGAATCATGAACAAA 1382 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 CAGACACAAGCAGAGAAGAAAGAAACTCCCCAAGAACGACTGAAGAGAATCATGAACAAA 1376 Query 1383 CAGCTAACGAAGCAAATTAAGAAAGACTCTGCAACAGAAACGGCTAAGAAACGAGAACAG 1442 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1377 CAGCTAACGAAGCAAATTAAGAAAGACTCTGCAACAGAGACTGCTAAGAAACGAGAACAG 1436 Query 1443 GAGCGACAAAGGCTGGAGAAACTAGCGGAAACAAGCCGGTTAAGTCGGAA-TAGGCAGCG 1501 ||||| ||||||||||||||| | ||||||||||||||||||||||| || |||||| || Sbjct 1437 GAGCGGCAAAGGCTGGAGAAAATTGCGGAAACAAGCCGGTTAAGTCG-AAGTAGGCATCG 1495 Query 1502 CAGCCGTAGTAGGAGT-ATTAGTCGATCACCACCACCGAGGTT 1543 |||||||||||||||| || ||||||||||||||||||||||| Sbjct 1496 CAGCCGTAGTAGGAGTTAT-AGTCGATCACCACCACCGAGGTT 1537 Score = 315 bits (170), Expect = 1e-84 Identities = 257/297 (87%), Gaps = 14/297 (5%) Strand=Plus/Plus Query 1544 AAGACACAGGCGAAGCAGAAGCAGAAGCGGAAGCAGGAGCAGGAGATCACGCAGGCACAG 1603 |||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 1713 AAGACACAGGCGAAGCAGAAGCAGAAGCCGAAGCAGAAGCAGGAGATCGCGTAGGCACAG 1772 Query 1604 TTCAAGGTCACGGTCTAGGTCCCCATCTAGGTCGTTATCACGCTCTCCGAAACGCTCACG 1663 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1773 TTCAAGGTCACGGTCTAGGTCCCCATCTAGGTCGTTATCACGGTCTCCCAAACGCTCACG 1832 Query 1664 CAGACGCTCTCCATCTTATTCGAGGTCTCCCAGGCGAAGAAGCAGCAGGTCAAGGCACTG 1723 || |||||||||||||||||| ||||||||||||| |||||| |||||| |||||||||| Sbjct 1833 CAAACGCTCTCCATCTTATTCAAGGTCTCCCAGGCAAAGAAGAAGCAGGACAAGGCACTG 1892 Query 1724 AAGAGAGGAAACTCTAATTGTTGCGGCAGCtt-t-tttt-G-TTGCCTCTGTTCAttttt 1779 ||| ||||| ||||| |||||||| | || | |||| | || || ||| | ||||| Sbjct 1893 AAGGGAGGACACTCTTATTGTTGCCTCTTTTTATGTTTTTGCTT-CCACTGGT--TTTTT 1949 Query 1780 tttttttttCTGTGTGTTTT-CGT-ATCCT-TACGATTCAGTGGTAAAATATGGTTT 1833 ||||||||| |||||||||| | | || | || || |||||||||| | |||||| Sbjct 1950 TTTTTTTTT-TGTGTGTTTTACTTGATA-TATA--ATCCAGTGGTAAATTGTGGTTT 2002 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74580699710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5