BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36988.1
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490909 jgi|Araly1|490909|fgenesh2_kg.7__342__AT4G36988.1 1742 0.0
> Ahg490909 jgi|Araly1|490909|fgenesh2_kg.7__342__AT4G36988.1
Length=1655
Score = 1742 bits (943), Expect = 0.0
Identities = 1156/1252 (92%), Gaps = 42/1252 (3%)
Strand=Plus/Plus
Query 163 aaaaaaGACTTTA-TA-TTTATTTACTTTTTAATCACACGGATTAGCTCCGGCGAAGTAT 220
||| || |||| | || ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 109 AAATAACACTTAACTAGTTTATATA--TTTTAATCACACGGATTAGCTCCGGCGAATTAT 166
Query 221 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 226
Query 281 ACGAAACTCCGATCTTCTCCGTTCTCGTGTTTTCCTCTCTGGCTTTTATTGCTGGGATTG 340
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 227 ACGAAACTCCGATCTCCTCCGTTCTCGTGTTTTTCTCTCTGGCTTTTATTGCTGGGATTG 286
Query 341 GGAATTTCTCACCGCtctcttgctttttagttgctgattctttttc-ctt-cga-ctttc 397
|||||||||||||||||||||||| |||||||||| | |||||||| || | | |||||
Sbjct 287 GGAATTTCTCACCGCTCTCTTGCTCTTTAGTTGCTAAATCTTTTTCATTTCCAATCTTTC 346
Query 398 tatttccaatctttcttcttctc-tttgtgtattagattatttttagttttatttttctG 456
|| | || ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 347 ---TT-C-TTC-TTCTTCTTCTCTTTTGTGT-TTAGATTATTTTTAGTTTTA-------- 391
Query 457 TGGTAAAATaaaaaaaGTTCGCCGGAGATGACGGCTGTGACGGCGGCGCAAAGATCAGTT 516
||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 392 --AAAAAAT-AAAAAAGATCGCCGGAGATGACGGCGGTGACGGCGGCGCAAAGATCTGTA 448
Query 517 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTTGATGATCATAGCACAGACGACGTC 576
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 449 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTGGATGATCATAACACAGACGACGTC 508
Query 577 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTCGTGTGGAAAACAGCAGAGTTTGCTAAA 636
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 509 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTGGTGTGGAAAACAGCAGAGTTTGCTAAA 568
Query 637 GATCTTCTTCCTCAATACTTCAAGCATAATAATTTCTCAAGCTTCATTCGTCAGCTCAAC 696
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 569 GATCTTCTTCCTCAATACTTCAAGCATAACAATTTCTCAAGCTTCATTCGTCAGCTCAAC 628
Query 697 ACTTACGGATTTCGTAAAACTGTACCGGATAAATGGGAATTTGCAAACGATTATTTCCGG 756
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 629 ACTTACGGATTTCGGAAAACTGTACCGGATAAATGGGAATTCGCGAACGATTATTTCCGG 688
Query 757 AGAGGCGGGGAGGATCTGTTGACGGACATACGACGGCGTAAATCGGTGATTGCTTCAACG 816
|||||||| |||||||||||| |||| ||| ||||||||||| |||||||||| ||||||
Sbjct 689 AGAGGCGGAGAGGATCTGTTGTCGGAGATAAGACGGCGTAAAGCGGTGATTGCCTCAACG 748
Query 817 GCGGGGAAATGTGTTGTTGTTGGTTCGCCTTCTGAGTCTAATTCTGGTGGTGGTGATGAT 876
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 749 GCGGGGAAATGTGTTGTTGTTGGTTCGCCGTCTGAGTCAAATTC---TGGTGGTGATGAT 805
Query 877 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTGGAGAAC 936
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 806 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTTGAGAAC 865
Query 937 ATGGTTGCTGATTTATCAGGAGAGAACGAGAAGCTTAAACGTGAAAACAATAACTTGAGC 996
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 866 ATGGTTGCTGATTTATCAGGTGAGAACGAGAAGCTGAAACGTGAAAATAATAACTTGAGC 925
Query 997 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGCGATGAGCTAGTGACGTTCTTGACGGGTCAT 1056
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 926 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGTGATGAGCTAGTGACGTTCTTGACGGGTCAT 985
Query 1057 CTGAAAGTAAGACCGGAACAAATCGATAAAATGATCAAAGGAGGGAAATTTAAACCGGTG 1116
|||||||| |||||||| ||||||||| | |||||||||||||||||||| ||||||||
Sbjct 986 CTGAAAGTCAGACCGGAGCAAATCGATCAGATGATCAAAGGAGGGAAATTCAAACCGGTT 1045
Query 1117 GAGTCTGACGAAGAGAGTGAGTGCGAAGGTTGCGACGGCGGCGGAGGAGCAGAGGAGGGG 1176
|| || |||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1046 GAATCGGACGAAGAGAGTGAATGCGAAGGTT--G-CGGCGGCGGAGGAGCAGAGGAGGGG 1102
Query 1177 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1162
Query 1237 CGGGATGAAAAGA-ATTATGTGGTGAGTGGGTCCCGTATGACGGAAATAAAGAACGTGGA 1295
||||||||||| | ||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1163 CGGGATGAAAA-ACATTATTTGGTGGGTGGGTCCGGTATGACGGAAATAAAGAACGTGGA 1221
Query 1296 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTCTGCAACTaaaaaaaGAGTAGAAGACT 1355
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1222 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTTTGCAACTAAAAAA-GAGTAGAAGACT 1280
Query 1356 GTTCAAAC--CAG-C----GTGTGACACGTCATCGACGACGACGaaaaaaat 1400
|||||||| || | |||||||||||||||||||| ||||||||||||
Sbjct 1281 GTTCAAACTTCAAACCATCGTGTGACACGTCATCGACGAAGACGAAAAAAAT 1332
Score = 139 bits (75), Expect = 6e-32
Identities = 102/114 (89%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 1667 TTTATGTTTGATTGATTTTCTTTGCAAGTAGTAGTAGGTGGTTTCCGTGTTTTTACGTAA 1726
||||| ||||||| ||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 1546 TTTATTTTTGATTTATTTTCTTTGC-A--AGTAGTAGGTGATTTCCGTGTTTTTACGTAA 1602
Query 1727 TCCGTTGAATATTTTTCCCTCGAAATTGTCTTT-ATAAAAGTCACAGAAACATT 1779
||||||||||||||| || || ||||||||||| | |||||||||| |||||||
Sbjct 1603 TCCGTTGAATATTTT-CCATCAAAATTGTCTTTGAAAAAAGTCACAAAAACATT 1655
Score = 65.8 bits (35), Expect = 1e-09
Identities = 45/49 (92%), Gaps = 3/49 (6%)
Strand=Plus/Plus
Query 1448 gtt-ttaaaaaGGTGAAGAAGGTCCAGAAGGATCAACGCAAATATATAA 1495
||| || |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1352 GTTATT-AAAA-GTGAAGAAGGTCCAGAAGGATCAACGCAAATATTTAA 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66924560465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5