BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37040.1 Length=1361 Score E Sequences producing significant alignments: (Bits) Value Ahg944158 jgi|Araly1|944158|scaffold_700387.1 1762 0.0 Ahg490916 jgi|Araly1|490916|fgenesh2_kg.7__349__AT4G37050.1 89.8 5e-17 > Ahg944158 jgi|Araly1|944158|scaffold_700387.1 Length=1093 Score = 1762 bits (954), Expect = 0.0 Identities = 1050/1097 (96%), Gaps = 4/1097 (0%) Strand=Plus/Plus Query 17 AGCTCGCCGAGAAAGCACAAATGGCGGGCGTGAAATCTCTGCAACCTAGACTCATATCTT 76 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1 AGCTCGCCGAGAAAGCACAAATGGCGGGCGTGAAATCTCTGCAACCCAGACTCATCTCTT 60 Query 77 CCTTTCTCGGCAACAATTCTATTAGATCAACGCAACCACTTATTCATCTCTTTCGCTTCG 136 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 CCTTTCTCGGCAACAATTCTATTCGATCAACGCAACCACTTATTCATCTCTTTCGCTTCG 120 Query 137 ATTTAGGAAGAAGACATGTTTCGATGCAATTATCAAGAACCTTTTCTGGATTAACCGATC 196 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 121 ATTTAGGAAGAAGACATGTTTCGATGCAATTATCAAGAACCTTTTCCGGATTAACCAATC 180 Query 197 TCCTGTTTAATAGAAGAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGAC 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCCTGTTTAATAGAAGAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGAC 240 Query 257 CGGGAAATGTATCTCCTCGTCGTCCTGTTCCGGGTCATATAACAAAACCTCCTTATGTTG 316 | |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 241 CTGGAAATGTATCTCCTCGTCGTCCTGTCCCGGACCATATAACAAAACCTCCTTATGTTG 300 Query 317 ATTCTCTTCAAGCTCCCGGAATCTCAAGTGGACTTGAAGTTCATGATAAGAAAGGTATAG 376 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 301 ATTCTTTTAAAGCTCCCGGAATCTCAAGTGGACTTGAAATTCATGATAAGAAAGGTATAG 360 Query 377 AATGCATGAGAGCTTCTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGG 436 |||||||||||||||| |||| |||||||||||||||||| || |||||||| ||||||| Sbjct 361 AATGCATGAGAGCTTCCGGAAAACTTGCAGCTAGGGTTCGGGAATACGCTGGGACTTTGG 420 Query 437 TTAAGCCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATTGAGA 496 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTAAGCCAGGCGTAACCACAGATGAAATCGATGAAGCAGTTCACAATATGATTATTGAGA 480 Query 497 ATGGAGCTTATCCTTCGCCTCTTGGTTATGGAGGTTTCCCGAAAAGTGTTTGCACATCTG 556 ||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 481 ATGGAGCGTATCCTTCGCCTCTTGGTTATGGAGGTTTTCCGAAGAGTGTCTGCACATCTG 540 Query 557 TGAATGAATGCATTTGCCATGGTATACCAGATTCAAGACCACTTGAGGATGGGGATATTA 616 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 541 TGAATGAATGCATTTGCCATGGAATACCAGATTCAAGACCACTTGAGGATGGGGATATAA 600 Query 617 TCAACATCGATGTCACAGTTTATTTGAATGGTTATCATGGTGATACTTCAGCAACTTTCT 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TCAACATCGATGTCACAGTTTATTTGAATGGTTATCATGGTGATACTTCAGCAACTTTCT 660 Query 677 TCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAGGTGACGAAAGAGTCTCTCG 736 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 661 TCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAGGTGACAAAAGAGTCTCTCG 720 Query 737 ACAAAGCAATATCAATATGTGGTCCCGGAGTTGAGTACAAGAAAATCGGCAAAGTCATTC 796 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 721 ACAAAGCTATATCAATATGTGGTCCTGGAGTTGAGTACAAGAAAATCGGCAAAATCATTC 780 Query 797 ATGATCTTGCAGATAAACATAAATATGGAGTTGTTCGACAATTTGTAGGCCACGGGGTTG 856 ||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| Sbjct 781 ATGATCTTGCAGATAAACATAGATATGGGGTTGTTCGACAATTTGTAGGCCATGGGGTTG 840 Query 857 GCAGCGTCTTCCACGCTGATCCAGTTGTTCTGCATTTCCGGAACAATGAAGCTGGACGTA 916 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 841 GCAGCGTCTTCCACGCAGATCCAGTTGTTCTACATTTCCGGAACAATGAAGCTGGACGTA 900 Query 917 TGGTCTTGAATCAAACCTTCACCATTGAACCGATGCTTACAATAGGAAGCAGAAACCCGA 976 ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 901 TGGTCTTGAATCAAACCTTCACCATAGAACCAATGCTTACGATAGGAAGCAGAAACCCGG 960 Query 977 TAATGTGGGATGATAACTGGACCGTGGTAACAGAAGATGCAAGCCTCTCGGCGCAATTCG 1036 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 961 TAATGTGGGATGATAACTGGACCGTGGTAACGGAAGATGCAAGCCTCTCTGCGCAATTCG 1020 Query 1037 AGCATACCATTCTTATAACCAAAGATGGTGCTGAGATTCTAACCAAGTGTTaaaaaaaTG 1096 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 1021 AGCATACGATTCTTATAACCAAAGATGGTGCTGAGATTCTAACCAACTGTTAAAAA--TG 1078 Query 1097 ATTCTGAAAAATTGATC 1113 | ||| ||| |||||| Sbjct 1079 AATCTTAAA--TTGATC 1093 > Ahg490916 jgi|Araly1|490916|fgenesh2_kg.7__349__AT4G37050.1 Length=1438 Score = 89.8 bits (48), Expect = 5e-17 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 1139 AAGGTATGTAAGAATCATATTCTTATTCAAATATTGTTTTGCTCACAAGCA 1189 ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1438 AAGGTATGTAAGAATCATATTCTTATTCAAATATTCTTTTGCTCACAAGCA 1388 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50932217112 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5