BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37180.2
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490936 jgi|Araly1|490936|fgenesh2_kg.7__369__AT4G37180.2 2006 0.0
> Ahg490936 jgi|Araly1|490936|fgenesh2_kg.7__369__AT4G37180.2
Length=1391
Score = 2006 bits (1086), Expect = 0.0
Identities = 1321/1425 (93%), Gaps = 53/1425 (4%)
Strand=Plus/Plus
Query 30 TCTTCTTCTATATATACCTCTTTAAGCTTGCTTCTCTTTGTCTTTATC-T-T--G----T 81
||||||||||||||||| ||||||||| |||||||||||||||||||| | | | |
Sbjct 2 TCTTCTTCTATATATACGTCTTTAAGC-TGCTTCTCTTTGTCTTTATCTTGTCCGTTTAT 60
Query 82 CCG-ATGGTTCAAACAGAAACCGATCAAAGGATGGGTCTTAATCTGAATTTGTCTATCTA 140
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGAATGGTTCAAACAGAAACAGATCAAAGGATGGGTCTTAATCTGAATTTGTCTATCTA 120
Query 141 CTCTTTACCAAAACCCTTATCTCAATTTCTCGATGAAGTGTCGAGGATCAAAGACAATCA 200
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CTCTTTACCAAAACCCTTATCTCAATTTCTCGATCAAGTGTCGAGGATCAAAGACAATCA 180
Query 201 TTCCAAACTGTCTGAAATCGATGGTTATGTCGGAAAATTAGAGGAAGAAAGGAACAAAAT 260
||| ||||||||||||||||||||||||||||| |||||||||||||| || || |||||
Sbjct 181 TTCGAAACTGTCTGAAATCGATGGTTATGTCGGGAAATTAGAGGAAGAGAGAAAAAAAAT 240
Query 261 CGATGTTTTTA-AACGAGAACTCCCTTTATGCATGCTCTTATTGAACGAAGAGATTGTTT 319
||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 CGATGTTTTTAGAA-GAGAACTCCCTTTATGCATGCTCTTATTGAACGAAGAAATTGTTT 299
Query 320 TTCTCTGTGTAGCGATTGGGGCGTTGAAGGATGAGGCTAGAAAAGGGTTATCACTGATGG 379
|||||||||||||||||| ||||||||| || |||||||||||||||| |||| ||||||
Sbjct 300 TTCTCTGTGTAGCGATTGAGGCGTTGAATGAAGAGGCTAGAAAAGGGTCATCAGTGATGG 359
Query 380 CATCTAATGGGAAATTCGATG-ATGTTGAAAGGGCAAAACCGGAAACTGATAAGAAGAGC 438
|||| |||||||||||||||| | | |||| |||||||||||||||||||||||||||||
Sbjct 360 CATCAAATGGGAAATTCGATGAACG-TGAAGGGGCAAAACCGGAAACTGATAAGAAGAGC 418
Query 439 TGGATGAGCTCTGCCCAGTTATGGATCTCGAACCCTAATTCCCAATTCCGATCGACAAAT 498
||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||
Sbjct 419 TGGATGAGCTCTGCCCAGTTATGGATCTCGAACCCTAATTCTCAATTGCAATCGAC-AA- 476
Query 499 GAAGAAGAAGAAGATCGGTGTGTGAGTCAGAACCCATTTCAGACATGTAATTACCCTAAT 558
| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 -ACGAAGAAGAAGATCGGTGTGTGAGTCAGAACCCATTTCAGACATG---------TAAT 526
Query 559 CAAGGAGGGGTATTTATGCCATTTAACCGTCCCCCACCTCCTCCACCACCAGCTCCTCTG 618
|||||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 527 CAAGGAGGGGCATTTCTGCCATTTAACCCTCCTCCACCTCCTCCACCACCAGCTCCTCTG 586
Query 619 TCTCTCATGACTCCAACATCAGAGATGATGATGGATTATAGCAGAATTGAGCAGAGTCAT 678
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 587 TCTCTCATGACTCCAACATCAGACATGATGATGGATTGTAGCAGAATTGAGCAGAATCAT 646
Query 679 CATCATCATCA--A-TTCAATAAACCTTCTTCACAGAGTCATCACATTCAGAAGAAAGAG 735
||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 647 CATCATCATCATCAGTTCAACAAACCTTCTTCACAGAGTCATCACATTCAGAAGAAAGAG 706
Query 736 CAGAGAAGGAGATGGTCACAGGAACTTCACCGTAAATTTGTTGATGCTCTTCATAGGCTT 795
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 707 CAGAGAAGGAGATGGTCACAGGAACTTCACCGTAAATTCGTTGATGCTCTTCACAGGCTT 766
Query 796 GGAGGGCCACAAGTTGCTACACCAAAGCAGATTAGAGATTTGATGAAAGTTGATGGTTTA 855
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GGAGGGCCACAAGTGGCTACACCAAAGCAGATTAGAGATTTGATGAAAGTTGATGGTTTA 826
Query 856 ACCAATGATGAAGTCAAGAGCCATTTACAAAAATATAGAATGCATATCCGTAAGCATCCG 915
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 827 ACCAATGATGAAGTCAAGAGTCATTTACAAAAATATAGAATGCATATCCGTAAGCATCCA 886
Query 916 CTGCATCCGACAAAGACTTTGTCATCGTCGGATCAGCCAGGTGTG-T-T-AGAGAGAGAA 972
|||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||
Sbjct 887 CTGCATCCGACAAAGACTTTGTCATCGTCGGATCAGCCCGGTGTGTTGTCAGAGAGAGAA 946
Query 973 TCGCAGAGCTTAATAAGTTTGTCGAGGTCGGATTCGCCACAAAGCCCACTTGTTGCAAGA 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TCGCAGAGCTTAATAAGTTTGTCGAGGTCGGATTCGCCACAAAGCCCACTTGTTGCAAGA 1006
Query 1033 GGGTTGTTCAGTAGTAATGTTGGTCATAGCTCagaggaagatgaggaggaggaggatgaa 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1007 GGGTTGTTCAGTAGTAATGTTGGTCATAGCTCAGAGGAAGATGAGGAGGAGGATGAAGAA 1066
Query 1093 gaggaggagaAGTCTGATGGACGTAGTAGCTGTAGAAATGATGAAACAAAGAAGAAGAGA 1152
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GAGGAGGAGAAATCTGATGGACGTAGTAGCTGTAGAAATGATGAAACAAAGAAGAAGAGA 1126
Query 1153 CAAGTGTTGGATCTTGAGCTTTGAAAGTCTGCATAGTGAATGATATAATCTTTACCAACT 1212
||||||||||||||||||||||||||||| |||||||||| ||||||||| | |||||||
Sbjct 1127 CAAGTGTTGGATCTTGAGCTTTGAAAGTCGGCATAGTGAAGGATATAATCAT-ACCAACT 1185
Query 1213 TATGTTATATATGCTCAAAACTTTGAGTTTGTTCGGGAGTTTTTGTAGATGTAAACATGA 1272
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1186 TATGTTATATATGCTCAAAACTT-GAGTTTGTTCGGGAGTTTTTGTAGATGTAAACATGA 1244
Query 1273 GAGTTGAAATAAGGAAGAGGATTTTGAGCAAAAAGTAGGGTTTGTTTTTGCAAGAGGAAA 1332
|||||||||||||||||||| |||| | ||| ||||||||||||||||
Sbjct 1245 GAGTTGAAATAAGGAAGAGG-TTTT----------T----TTT-TTTTTGCAAGAGGAAA 1288
Query 1333 TAGATAGA-GAAGAGTGTTCGAAATCCTCTGTGttttttttttttttttttttttACTTC 1391
|||||||| || ||||| || |||||||||| |||| | ||||| ||||||| |||||||
Sbjct 1289 TAGATAGAAGA-GAGTGATCAAAATCCTCTG-GTTTGTGTTTTTGTTTTTTTGTTACTTC 1346
Query 1392 ATAAGTAAGATAAACTCATATATCAAAGATTTTGTTTTTATACTT 1436
||||| ||| |||||||| |||||||||||||||||||| |||||
Sbjct 1347 ATAAGAAAGGTAAACTCAAATATCAAAGATTTTGTTTTTTTACTT 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5