BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37200.1 Length=1135 Score E Sequences producing significant alignments: (Bits) Value Ahg490939 jgi|Araly1|490939|fgenesh2_kg.7__372__AT4G37200.1 1476 0.0 > Ahg490939 jgi|Araly1|490939|fgenesh2_kg.7__372__AT4G37200.1 Length=1013 Score = 1476 bits (799), Expect = 0.0 Identities = 962/1036 (93%), Gaps = 30/1036 (3%) Strand=Plus/Plus Query 22 TAACAAAAAGCGTGTGGCTCTAATAGCTTGGTTAGACGAAGAAGCTACTACTCCTTCGAT 81 ||||||||| ||||||| || ||||||||||||||||||||||||||| || || |||| Sbjct 1 TAACAAAAAACGTGTGGTTCGAATAGCTTGGTTAGACGAAGAAGCTACAAC-ACTACGAT 59 Query 82 AATAACGATCTGATG-AGTAGCAGTTTTGTCATCTCTCTCACTCTCTC-C-CGACGATGG 138 ||| ||||||||||| |||| ||||||||||||||||||| ||||||| | ||||||||| Sbjct 60 AATGACGATCTGATGAAGTAACAGTTTTGTCATCTCTCTCTCTCTCTCTCGCGACGATGG 119 Query 139 CTCGCTTAGTATTTTCTTTAAACCTTCCATCTAGTCATGGATTCAATCTCAGTCCTCGAA 198 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CTCGCTTAATCTTTTCTTTAAACCTTCCATCTAGTCATGGATTCAATCTCAGTCCTCGAA 179 Query 199 ATCTTCAATCTTTCTTCGTTACCCAAACAGGAGCTCCACGATTTCGCGCTGTTCGTTGCA 258 ||| ||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| Sbjct 180 ATCATCAATCTTTCTTCATTACCAAAACAGGAGCTCCACGATTTCGTGCTGTTCGTTGCA 239 Query 259 AACCAAACCCAGAATCTTCCGAAACCAAACAGGAGAAATTGGTAATAGAT-A-A-TGGTG 315 |||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||| Sbjct 240 AACCAAACCCAGAATCTTCCGAAACCAAACAGGAGAAATTGGTAGTAGATAATATTGGTG 299 Query 316 AAACTTCATCTGCATCGAAGGAAGTGGAATCATCATCATCTGTTGCTGACtcttcttctt 375 ||| |||| ||||||||||| || ||| | ||||||||||||||| |||||||| Sbjct 300 AAAGTTCAGCTGCATCGAAGAAAATGG----A--ATCATCTGTTGCTGA---TTCTTCTT 350 Query 376 cttcttcttcGGGATTCCCTGAATCTCCCAATAAGGATATCAATAGAAGAGTTGCGGCTG 435 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 CCTCTTCTTCTGGATTCCCTGAATCTCCCAATAAGGATATCAATAGAAGAGTTGCGGCTG 410 Query 436 TTACTGTAATCGCGGCTTTGTCGTTATTTGTATCGACAAGGCTCGATTTTGGGATTTCTT 495 ||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| | Sbjct 411 TTACTGTAATCGCGGCTTTGTCGTTGTTTGTGTCAACAAGGCTCGATTTTGGGATTTCAT 470 Query 496 TGAAGGATTTAACCGCTTCTGCGTTGCCTTACGAGGAGGCGTTATCGAATGGGAAGCCGA 555 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 471 TGAAGGATTTAACCGCTTCTGCGTTGCCTTACGAGGAGGCTTTGTCGAATGGGAAGCCGA 530 Query 556 CTGTTGTTGAGTTCTATGCAGATTGGTGTGAAGTTTGTCGAGAACTAGCTCCTGATGTTT 615 | || || ||||| ||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 531 CAGTGGTAGAGTTTTATGCAGATTGGTGTGAGGTTTGTCGAGAACTAGCCCCTGATGTTT 590 Query 616 ATAAAATCGAGCAGCAATACAAGGACAAAGTTAACTTTGTGATGCTAAATGTGGACAACA 675 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 ACAAAATCGAGCAGCAATACAAGGACAAAGTTAACTTTGTGATGCTAAATGTGGACAACA 650 Query 676 CGAAATGGGAGCAAGAGTTGGATGAGTTTGGTGTTGAGGGTATTCCTCATTTCGCCTTCC 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 651 CGAAATGGGAGCAAGAGTTGGATGAGTTTGGTGTTGAGGGTATTCCTCATTTCGCCTTCC 710 Query 736 TCGATAGAGAAGGGAACGAAGAAGGTAATGTGGTCGGGAGGCTCCCAAGACAGTATTTAG 795 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 711 TCGATAGAGAAGGGAACGAAGAAGGTAATGTGGTCGGGAGGCTCCCGAGACAGTATTTAG 770 Query 796 TTGAAAATGTGAATGCGCTTGCAGCCGGGAAACAATCAATTCCTTATGCCCGAGCCGTGG 855 |||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 771 TTGAAAATGTAAATGCGCTTGCAGCCGGGAAGCAATCAATTCCTCATGCCCGAGCCGTGG 830 Query 856 GACAGTACTCAAGCT-CAGAGTCTCGTAAGGTGCATCAGGTTACTGATCCCTTAAGCCAT 914 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| Sbjct 831 GACAGTACTCAAG-TGCCGAGTCTCGTAAGGTGCATCAGGTTACTGATCCCTTAAGCCAT 889 Query 915 GGATAAAGAGAGTGGCATCACTATCATGCTTCTGGCAGATGATAGAAGTTGTTTCTAACT 974 ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 890 GGATAGAGAGAGTGACATCACTATCATGGTTCTGGCAGATGATAGAAGTTGTTTCTAACT 949 Query 975 CTATAGTGCACaaaaaaaGTAGACAGGAAAGGAAAGTCGGAAAGTAGCAATGTTTCAAAT 1034 ||||||||||||||||| ||||||||||| | | | | | | ||||||||||||| Sbjct 950 CTATAGTGCACAAAAAA-GTAGACAGGAA-GTA--G-C--A--G---CAATGTTTCAAAT 997 Query 1035 TGATCAAAAGAATCCC 1050 |||||||||||||||| Sbjct 998 TGATCAAAAGAATCCC 1013 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42316437870 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5