BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37270.1 Length=2808 Score E Sequences producing significant alignments: (Bits) Value Ahg490893 jgi|Araly1|490893|fgenesh2_kg.7__326__AT4G37270.1 4002 0.0 Ahg343887 jgi|Araly1|343887|fgenesh1_pg.C_scaffold_4000229 1339 0.0 > Ahg490893 jgi|Araly1|490893|fgenesh2_kg.7__326__AT4G37270.1 Length=3463 Score = 4002 bits (2167), Expect = 0.0 Identities = 2438/2568 (95%), Gaps = 22/2568 (1%) Strand=Plus/Plus Query 31 TTCATCTTTTTCACCAAGACGAACGACTCTTACACGCAGAGTTCGCGAGATCAGAATCAA 90 ||| ||||| ||||| | | | |||||||| | |||||||||||| |||||||||||||| Sbjct 1 TTCTTCTTTGTCACC-A-A-G-ACGACTCTAATACGCAGAGTTCGTGAGATCAGAATCAA 56 Query 91 TGGTGGCATGAAAAACGACGCTT--GAGCTCAAATTCGTCGACCATGGAACCTGCAACTC 148 ||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||| Sbjct 57 TGGTGGCATGAAAAACGACGCTTGAGAGCTCCAATTCGTCGATTATGGAACCTGCAGCTC 116 Query 149 TTACTCGTTCTTCCTCTCTTACTAGATTCCCTTATCGTCGTGGTTTATCCACTCTCCGAC 208 ||||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||| Sbjct 117 TTACTCGTTCTTCCTCTCTCACTAGATTCCCTTATCGTCGCGGTTTAGCTACTCTCCGAC 176 Query 209 TCGCTCGAGTCAACTCGTTCTCAATTCTTCCACCTAAAACTCTTCTCCGTC-AAAA--AC 265 ||||||||||||||||||||||| ||||||||||||| |||||||||| || |||| | Sbjct 177 TCGCTCGAGTCAACTCGTTCTCAGTTCTTCCACCTAAGACTCTTCTCCATCGAAAACCTC 236 Query 266 -CGCT-TC-GTATCTCTGCTTCCCTTAATCTTCCACCACGGTCGATTCGTCTACGTGCTG 322 | || || ||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 237 TCCCTCTCTCTATCTCTGCCTCCCTTAGTCTTCCACCACGGTCGATTCGTCTACGTGCTG 296 Query 323 TCGAAgatcaccatcacgatcatcatcacgatgacgagcaagatcat---cacaacca-c 378 ||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||| | Sbjct 297 TCGAAGACCACCATCACGATCATCATCATGATGACGAGCAAGATCATGACCACCACCATC 356 Query 379 --catcatcatcaccatcaacacgGATGCTGTTCTGTGGAATTGAAAGCGGAGAGTAAGC 436 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 357 ATCATCATCATCACCATCAACACGGATGCTGTTCCGTGGAATTGAAAGCGGAGAGTAAGC 416 Query 437 CTCAGAAGATGTTGTTCGGATTCGCTAAAGCTATCGGATGGGTTAGATTGGCCAATTACC 496 |||||||| |||||||||||||||||||||| | ||||||||| ||||||||||||||| Sbjct 417 CTCAGAAGGTGTTGTTCGGATTCGCTAAAGCCGTTGGATGGGTTCGATTGGCCAATTACC 476 Query 497 TCAGAGAGCATCTTCATCTTTGCTGCTCCGCCGCTGCAATGTTCCTCGCTGCCGCCGTC- 555 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 477 TCAGGGAGCATCTTCATCTTTGCTGCTCCGCCGCCGCAATGTTCCTCGCTGCCGCCG-CG 535 Query 556 TGTCCTTACCTTGCTCCTGAACCTTACATTAAGTCTCTTCAGAACGCATTCATGATTGTT 615 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 536 TGTCCTTACCTTGCTCCTAAACCTTACATTAAGTCTCTTCAGAACGCATTCATGATTGTT 595 Query 616 GGTTTTCCTCTTGTTGGAGTTTCAGCATCTCTCGACGCACTTATGGATATAGCTGGAGGA 675 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 596 GGTTTCCCTCTTGTTGGAGTTTCAGCGTCTCTCGACGCACTTATGGATATAGCAGGAGGA 655 Query 676 AAAGTGAACATCCATGTCTTGATGGCACTTGCGGCTTTTGCATCTGTGTTTATGGGAAAT 735 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 656 AAAGTGAACATTCATGTATTGATGGCACTTGCGGCTTTTGCATCTGTGTTTATGGGGAAT 715 Query 736 GCTTTGGAAGGAGGATTGCTTCTAGCTATGTTCAATCTTGCTCATATTGCTGAGGAGTTC 795 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 716 GCTTTGGAAGGAGGATTACTTCTAGCCATGTTCAATCTTGCTCATATTGCTGAGGAGTTC 775 Query 796 TTTACTAGTCGATCAATGGTGGATGTCAAAGAATTGAAAGAGAGTAATCCAGATTCTGCA 855 || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||| Sbjct 776 TTCACTAGTCGATCAATGGTGGATGTGAAAGAGTTAAAAGAGAGTAATCCGGATTCTGCA 835 Query 856 TTGTTGATCGAAGTACACAATGGCAATGTTCCAAATATATCTGATTTGTCATACAAAAGC 915 ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 836 CTGTTGATCGAAGTACTCAATGGCAATGTTCCAAATATTTCTGATTTGTCCTACAAAAGC 895 Query 916 GTTCCTGTGCACAGCGTAGAAGTTGGATCCTATGTTTTGGTTGGAACTGGTGAGATTGTG 975 |||||||| ||||| |||||||||||||||||| | |||||||||||||||||||||||| Sbjct 896 GTTCCTGTACACAGTGTAGAAGTTGGATCCTATATATTGGTTGGAACTGGTGAGATTGTG 955 Query 976 CCTGTAGATTGCGAAGTCTATCAAGGTAGTGCTACAATTACAATTGAGCACTTGACTGGG 1035 |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| Sbjct 956 CCTGTAGATTGCGAAGTCTACCAAGGTAGTGCTACAATAACCATTGAGCACTTGACTGGG 1015 Query 1036 GAAGTCAAGCCGTTGGAGGCAAAAGCTGGAGATAGAGTGCCTGGTGGTGCAAGAAATTTG 1095 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 GAAGTCAAGCCGTTGGAGGCAAAAGCTGGAGATAGAGTGCCTGGTGGTGCAAGAAATTTG 1075 Query 1096 GATGGCAGAATGATTGTAAAGGCTACAAAGGCATGGAATGATTCGACGCTTAACAAGATT 1155 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1076 GATGGCAGAATGATTGTGAAGGCGACAAAGGCATGGAATGATTCGACGCTTAACAAGATT 1135 Query 1156 GTACAGCTGACCGAGGAAGCACATTCTAATAAACCCAAACTTCAGAGATGGCTGGATGAG 1215 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1136 GTACAGCTGACCGAGGAAGCACATTCTAAAAAACCCAAACTTCAGAGATGGCTGGATGAG 1195 Query 1216 TTTGGCGAGAATTACAGCAAGGTTGTCGTTGTTTTGTCACTTGCAATTGCCTTCCTAGGT 1275 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1196 TTTGGCGAGAATTACAGCAAGGTTGTAGTTGTTTTGTCACTTGCAATTGCCTTCCTAGGT 1255 Query 1276 CCATTTTTGTTCAAGTGGCCTTTTCTCAGCACCGCAGCATGTAGAGGATCTGTTTACAGA 1335 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1256 CCATTTTTGTTCAAGTGGCCTTTTCTCAGCACCGCAGCATGCAGAGGATCTGTTTACAGA 1315 Query 1336 GCATTGGGACTTATGGTGGCCGCATCACCATGTGCTCTGGCCGTAGCTCCATTGGCTTAT 1395 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1316 GCATTGGGACTTATGGTGGCCGCATCACCATGTGCTTTGGCCGTAGCTCCATTGGCTTAT 1375 Query 1396 GCTACTGCTATTAGTTCCTGTGCAAGAAAGGGAATATTGCTGAAAGGTGCACAGGTTCTA 1455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1376 GCTACTGCTATTAGTTCCTGTGCAAGAAAGGGAATATTGCTGAAAGGTGCACAGGTCCTA 1435 Query 1456 GATGCTCTTGCGTCTTGCCATACTATTGCTTTTGACAAAACTGGTACCTTAACAACCGGC 1515 |||||||| || |||||||||||| |||||||||||||||| || ||||||||||||||| Sbjct 1436 GATGCTCTCGCATCTTGCCATACTGTTGCTTTTGACAAAACCGGGACCTTAACAACCGGC 1495 Query 1516 GGCCTTACTTGTAAAGCAATTGAACCCATTTATGGGCACCAAGGAGGAACTAATTCAAGT 1575 ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1496 GGCCTTACTTGCAAAGCAATTGAACCCATTTATGGGCACCAAGGAGGAAATAATTCAAGT 1555 Query 1576 GTAATAACTTGCTGCATTCCAAATTGTGAAAAAGAAGCTCTTGCAGTTGCGGCTGCCATG 1635 |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1556 GTAACAACTTGCTGCATTCCAAATTGTGAAAAAGAAGCTCTTGCTGTAGCGGCTGCCATG 1615 Query 1636 GAGAAGGGCACCACGCATCCTATTGGAAGAGCTGTTGTAGATCACAGTGTGGGTAAGGAT 1695 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 1616 GAGAAGGGCACCACACATCCTATTGGAAGAGCTGTTGTAGATCACAGTGTGGGTAAAGAC 1675 Query 1696 CTTCCTTCTATTTTTGTTGAAAGCTTCGAATATTTTCCTGGTAGAGGCCTTACTGCTACT 1755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1676 CTTCCTTCTATTTTTGTTGAAAGCTTCGAATATTTTCCTGGTAGAGGCCTTACTGCAACT 1735 Query 1756 GTCAACGGTGTTAAGACAGTAGCTGAAGAGAGTAGATTACGAAAAGCATCACTTGGTTCT 1815 || ||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1736 GTAAACGGTGCCAAGTCGGTAGCTGAAGAAAGTAGATTACGAAAAGCATCACTTGGTTCG 1795 Query 1816 ATAGAGTTCATTACCTCACTTTTCAAATCTGAAGATGAATCTAAACAGATCAAGGATGCT 1875 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1796 ATAGAGTTCATTACCTCGCTTTTCAAATCTGAAGATGAGTCTAAACAGATCAAGGATGCT 1855 Query 1876 GTAAACGCGTCTTCGTACGGAAAGGACTTCGTTCATGCTGCTCTTTCTGTTGATCAAAAG 1935 |||||||| |||| |||||| || ||||| |||||||| ||||||||||||||||||||| Sbjct 1856 GTAAACGCCTCTTTGTACGGGAATGACTTTGTTCATGCAGCTCTTTCTGTTGATCAAAAG 1915 Query 1936 GTAACATTGATTCACCTCGAAGATCAGCCTCGTCCAGGGGTGTCAGGAGTTATAGCAGAA 1995 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1916 GTAACATTGATTCACCTCGAAGATCAGCCTCGTCCAGGGGTGTCAGGAGTTATAGCAGAA 1975 Query 1996 CTTAAAAGCTGGGCCAGACTCCGAGTAATGATGTTAACTGGGGACCATGATTCAAGTGCT 2055 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1976 CTTAAAAGCTGGGCCAGACTCCGAGTAATGATGTTAACTGGGGATCATGATTCAAGTGCT 2035 Query 2056 TGGAGAGTTGCAAACGCAGTGGGTATTACCGAAGTCTACTGCAACCTAAAGCCAGAGGAT 2115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2036 TGGAGAGTTGCAAACGCAGTGGGTATTACCGAAGTCTACTGCAACCTAAAGCCAGAGGAT 2095 Query 2116 AAGTTAAATCATGTAAAGAACAT-TGCTCGGGAAGCAGGTGGAGGTTTAATTATGGTAGG 2174 || |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 2096 AAATTAAATCATGTAAAGAACATCT-CTCGGGAAGCAGGTGGAGGTTTAATTATGGTAGG 2154 Query 2175 AGAAGGGATTAATGATGCTCCAGCTCTAGCAGCTGCAACAGTGGGGATTGTTCTTGCTCA 2234 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2155 AGAAGGGATTAATGATGCTCCAGCTCTAGCAGCTGCAACAGTTGGGATTGTTCTTGCTCA 2214 Query 2235 ACGAGCGAGTGCCACTGCGATTGCCGTTGCTGACATCTTACTGCTTCGAGACAACATCAC 2294 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2215 ACGAGCGAGTGCCACCGCGATTGCTGTTGCTGACATCTTACTGCTTCGAGACAACATCAC 2274 Query 2295 CGGTGTTCCGTTCTGTGTCGCTAAATCCCGCCAGACAACATCATTGGTCAAGCAAAACGT 2354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2275 CGGTGTTCCGTTCTGTGTCGCTAAATCCCGCCAGACAACATCATTGGTCAAGCAAAACGT 2334 Query 2355 AGCTCTTGCATTAACATCGATATTCTTGGCCGCTCTTCCTTCAGTTTTAGGGTTTGTCCC 2414 ||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||| || Sbjct 2335 AGCTCTTGCGTTAACATCGATATTCGTGGCTGCTCTTCCATCAGTTTTAGGGTTTGTTCC 2394 Query 2415 ATTGTGGTTGACGGTACTTCTACATGAAGGCGGGACTCTTCTGGTGTGTCTAAACTCAGT 2474 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2395 ATTGTGGTTGACGGTACTTCTACATGAAGGCGGGACTCTTCTCGTGTGTCTAAACTCAGT 2454 Query 2475 ACGTGGTCTAAACGATCCATCATGGTCGTGGAAACAAGACATAGTTCATCTAATCAACAA 2534 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2455 ACGTGGTCTAAACGATCCATCATGGTCGTGGAAACAAGACATAGTACATCTAATCAACAA 2514 Query 2535 GTTACGCTCACAAGAACCAACCAGTAGCAGCAGCAACAGTTTAAGCTC 2582 |||| ||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 2515 GTTAAGCTCACAAGAACCCACCAGTATCAGCAGCAACAGTTTAAGCTC 2562 Score = 89.8 bits (48), Expect = 1e-16 Identities = 77/89 (87%), Gaps = 10/89 (11%) Strand=Plus/Plus Query 2730 TTATATTTACTACTTTTAGTTTATGTTTG-----T---TTCCTCGTAACAAACCCATAGA 2781 ||||||||||||||| | ||||||||||| | |||||||||||||||||||||| Sbjct 2658 TTATATTTACTACTTGTGGTTTATGTTTGCTTCCTCCGTTCCTCGTAACAAACCCATAGA 2717 Query 2782 AT--AAAAGTTTGAGAAGTGTTTTTGACT 2808 || ||||||||||||||||||||||||| Sbjct 2718 ATAAAAAAGTTTGAGAAGTGTTTTTGACT 2746 > Ahg343887 jgi|Araly1|343887|fgenesh1_pg.C_scaffold_4000229 Length=2466 Score = 1339 bits (725), Expect = 0.0 Identities = 1203/1432 (84%), Gaps = 40/1432 (3%) Strand=Plus/Plus Query 1115 AGGCTACAAAGGCATGGAATGATTCGACGCTTAACAAGATTGTACAGCTGACCGAGGAAG 1174 ||||||||||||| |||||||| ||||| |||||||||||| |||| |||| ||||||| Sbjct 995 AGGCTACAAAGGCGTGGAATGAGTCGACACTTAACAAGATTCTACAATTGACTGAGGAAG 1054 Query 1175 CACATTCTAATAAACCCAAACTTCAGAGATGGCTGGATGAGTTTGGCGAGAATTACAGCA 1234 |||| |||||||||||||||||| |||||||||| |||||||||| |||| ||| |||| Sbjct 1055 CACACTCTAATAAACCCAAACTTGAGAGATGGCTTTATGAGTTTGGTGAGATTTATAGCA 1114 Query 1235 AGGTTGTCGTTGTTTTGTCACTTGCAATTGCCTTCCTAGGTCCATTTTTGTTCAAGTGGC 1294 |||| || |||||||||||| |||| ||||||||||| ||||| || |||||||||| || Sbjct 1115 AGGTGGTGGTTGTTTTGTCAGTTGCTATTGCCTTCCTTGGTCCGTTCTTGTTCAAGTTGC 1174 Query 1295 CTTTTCTCAGCACCGCAGCATGTAGAGGATCTGTTTACAGAGCATTGGGACTTATGGTGG 1354 | ||||| | ||| |||||||||||||||| |||||||||||||||||| || |||||| Sbjct 1175 CGGTTCTCGGAACCACAGCATGTAGAGGATCAGTTTACAGAGCATTGGGATTTCTGGTGG 1234 Query 1355 CCGCATCACCATGTG-CTCTGGCCGTAGCTCCATTGGCTTATGCTACTGCTATTAGTTCC 1413 | || ||||| |||| || |||| || ||||||||||||||||||||||| || ||||| Sbjct 1235 CGGCGTCACCGTGTGCCT-TGGCAGTTGCTCCATTGGCTTATGCTACTGCAATAAGTTCT 1293 Query 1414 TGTGCAAGAAAGGGAATATTGCTGAAAGGTGCACAGGTTCTAGATGCTCTTGCGTCTTGC 1473 ||||||||||||||||||||||||||||||| || || || |||||||| || ||||| Sbjct 1294 TGTGCAAGAAAGGGAATATTGCTGAAAGGTGGGCAAGTACTGGATGCTCTAGCTTCTTGT 1353 Query 1474 CATACTATTGCTTTTGACAAAACTGGTACCTTAACAACCGGCGGCCTTACTTGTAAAGCA 1533 |||||||||| |||||| ||||| || |||||||||||||| |||||||| || |||||| Sbjct 1354 CATACTATTGGTTTTGATAAAACCGGGACCTTAACAACCGGAGGCCTTACATGCAAAGCA 1413 Query 1534 ATTGAACCCATTTATGGGCA-C--CAAGGAGGAACTAATTCAAGTGTAATAAC-TTGCTG 1589 |||||||||||||||||||| | |||| ||||| |||| |||||||| | | ||| || Sbjct 1414 ATTGAACCCATTTATGGGCATCATCAAGAAGGAAATAATGAAAGTGTAA-ATCCTTGTTG 1472 Query 1590 CATTCCAAATTGTGAAAAAGAAGCTCTT-GCAGTTGCGGCTGCCATGGAGAAGGGCACCA 1648 || |||||||||||||| ||||| || || || || ||||| |||||||| || |||| Sbjct 1473 TATGCCAAATTGTGAAAATGAAGCA-TTAGCTGTAGCAGCTGCTATGGAGAAAGGTACCA 1531 Query 1649 CGCATCCTATTGGAAGAGCTGTTGTAGATCACAGTGT-GGGTAAGGATCTTCCTTCTATT 1707 | ||||||||||||||||| | || || |||||||| ||| ||||| || |||||| || Sbjct 1532 CACATCCTATTGGAAGAGCCATGGTTGACCACAGTGTTGGG-AAGGACCTCCCTTCTGTT 1590 Query 1708 TTTGTTGAAAGCTTCGAATATTTTCCTGGTAGAGGCCTTACTGCTACTGTCAACGGTGTT 1767 | |||||||||||| || |||||||| |||||||||||| |||||||||| ||| || || Sbjct 1591 TCTGTTGAAAGCTTTGAGTATTTTCCAGGTAGAGGCCTTTCTGCTACTGTTAACTGTATT 1650 Query 1768 AAGACAGTAGCTGAAGAG-AGTAGATTACGAAAAGCATCACTTGGTTCTA-TAGAGTTCA 1825 || ||||| | |||| | || | | | || ||||| ||||||||||| | |||| |||| Sbjct 1651 GAGTCAGTAACCGAAG-GTAGGAAACTGCGGAAAGCGTCACTTGGTTC-AGTAGAATTCA 1708 Query 1826 TTACCTCACTTTTCAAATCTGAAGATGAATCTA-AACAGATCAAGGATGCTGTAAACGCG 1884 |||| || || ||| |||| ||||||| |||| || |||||||| |||||||||| | Sbjct 1709 TTACTTCGCTCTTCGAATCACAAGATGAGTCTAGAA-AGATCAAGAATGCTGTAAATTCT 1767 Query 1885 TC-TTCGTACGGAAAGGACTTCGTTCATGCTGCTCTTTCTGTTGATCAAAAGGTAACATT 1943 || || ||||||||| ||||| |||||||||| |||||| ||||||||||||||||||| Sbjct 1768 TCATT-GTACGGAAATGACTTTGTTCATGCTGTTCTTTCACTTGATCAAAAGGTAACATT 1826 Query 1944 GATTCACCTCGAAGATCAGCCTCGTCCAGGGGTGTCAGGAGTTATAGCAGAACTTAAAAG 2003 |||||||||||| ||||||||||||| || ||| ||| |||| || |||||||||| || Sbjct 1827 GATTCACCTCGAGGATCAGCCTCGTCGAGAGGTATCAAAAGTTCTAACAGAACTTAAGAG 1886 Query 2004 CTGGGCCAGACTCCGAGTAATGATGTTAACTGGGGACCATGATTCAAGTGCTTGGAGAGT 2063 ||||| | | | || |||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1887 CTGGGGTAAAATGAGAATAATGATGTTAACTGGAGACCATGAGTCAAGTGCTTGGAGAGT 1946 Query 2064 TGCAAACGCAGTGGGTATT-ACCGAAGTCTACTGCAACCTAAAGCCAGAGGATAAG-TTA 2121 |||||| || ||||||||| | |||||||||||||||||||| ||||| || || || Sbjct 1947 TGCAAATGCTGTGGGTATTGAT-GAAGTCTACTGCAACCTAAAACCAGAAGACAAACTTG 2005 Query 2122 AATCATGT-AAAGAACATTGCTCGGGAAG---CAGGTGGAGG---TTTAATTATGGTAGG 2174 | |||||| ||| ||||| ||| | ||| |||||||||| |||||| ||||| || Sbjct 2006 A-TCATGTCAAA-AACAT--CTCAG-AAGGTTCAGGTGGAGGAGGTTTAATCATGGTGGG 2060 Query 2175 AGAAGGGATTAATGATGCTCCAGCTCTAGCAGCTGCAACAGTGGGGATTGTTCTTGCTCA 2234 |||||| ||||| |||| ||||||| ||||||||||||| || || |||||||||||||| Sbjct 2061 AGAAGGCATTAACGATGGTCCAGCTTTAGCAGCTGCAACCGTAGGAATTGTTCTTGCTCA 2120 Query 2235 ACGAGCGAGTGCCACTGCGATTGCCGTTGCTGACATCTTACTGCTTCGAGACAACATCAC 2294 ||| || |||||| | || || ||||||||||| ||||||| |||| |||||||||||| Sbjct 2121 ACGTGCAAGTGCCTCGGCTATAGCCGTTGCTGATGTCTTACTTCTTCAAGACAACATCAC 2180 Query 2295 CGGTGTTCCGTTCTGTGTCGCTAAATCCCGCCAGACAACATCATTGGTCAAGCAAAACGT 2354 |||||||| |||||| |||| ||||||||||| ||||||||| |||||||||||||||| Sbjct 2181 TGGTGTTCCTTTCTGTATCGCCAAATCCCGCCAAACAACATCACTGGTCAAGCAAAACGT 2240 Query 2355 AGCTCTTGCATTAACATCGATATTCTTGGCCGCTCTTCCTTCAGTTTTAGGGTTTGT-CC 2413 ||| |||| ||||| ||||||||||| ||||||||||| |||||| | || ||| | || Sbjct 2241 GGCTATTGCGTTAACCTCGATATTCTTAGCCGCTCTTCCATCAGTTCTCGGATTTCTTCC 2300 Query 2414 CATTGTGGTTGACGGTACT-TCTACATGAAGGCGGGACTCTTCTGGTGTGTCTAAACTC- 2471 | ||||||||||||||||| | ||||||||||||| || ||||| || || || ||||| Sbjct 2301 C-TTGTGGTTGACGGTACTAT-TACATGAAGGCGGAACACTTCTCGTTTGCCTTAACTCG 2358 Query 2472 AGTACGTGGTCTAAACGATCCATCATGGTCGTGGAAACAAGACATAGTTCAT 2523 | | || || ||||||||||||| ||||| |||||||| ||||| |||||| Sbjct 2359 ATT-CGCAGTTTAAACGATCCATCCTGGTCATGGAAACAGGACATTGTTCAT 2409 Score = 702 bits (380), Expect = 0.0 Identities = 589/689 (85%), Gaps = 17/689 (2%) Strand=Plus/Plus Query 438 TCAGAAGATGTTGTTCGGA-TTCGCTAAAGCTATCGGATGGGTTAGATTGGCCAATTACC 496 ||||||| ||||| || | |||||||||||||| |||||| || | || ||||||| || Sbjct 276 TCAGAAGTTGTTGCTC-AAGTTCGCTAAAGCTATTGGATGGATTCGCTTAGCCAATTTCC 334 Query 497 TCAGAGAGCATCTTCATCTTTGCTGCTCCGCCGCT-GCAATGTTCCTCGCTGCCGCCGTC 555 ||||||| |||| |||||||| ||||| ||| | | | | |||||||| || || | | Sbjct 335 TCAGAGAAAATCTCCATCTTTGTTGCTCATCCG-TCGTACTCTTCCTCGCCGCAGCGGCC 393 Query 556 TGTCCTTACCT--TG-CTCCTGAACCTTACATTA-AGTCTCTTCAGAACGCATTCATGAT 611 |||||| || | || |||| |||||||||||| | | |||| ||| | |||||||| Sbjct 394 TGTCCTCACTTGATGATTCCTAAACCTTACATTACA-CCAATTCAAAACTCCTTCATGAT 452 Query 612 TGTTGGTTTTCCTCTTGTTGGAGTTTCAGCATCTCTCGACGCACTTATGGATATAGCTGG 671 ||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 453 TGTTGCTTTCCCTCTTGTTGGAATTTCAGCATCTCTTGACGCACTTATGGATATAGCTGG 512 Query 672 AGGAAAAGTGAACATCCATGTCTTGATGGCACTT-GCGGCTTTTGCATCTGTGTTTATGG 730 ||||||||||||||||||||| || |||||| || || |||||||| ||||||||||||| Sbjct 513 AGGAAAAGTGAACATCCATGTTTTAATGGCA-TTAGCTGCTTTTGCTTCTGTGTTTATGG 571 Query 731 GAAATGCTTTGGAAGGAGGATTGCTTCTAGCTATGTTCAATCTTGCTCATATTGCTGAGG 790 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 572 GAAATGCTTTGGAAGGAGGATTACTTCTAGCCATGTTCAATCTTGCTCATATTGCTGAGG 631 Query 791 AGTTCTTTACTAGTCGATCAATGGTGGATGTCAAAGAATTGAAAGAGAGTAATCCAGATT 850 ||||||| |||||| | || ||| ||||||| ||||| ||||| |||||||||||||||| Sbjct 632 AGTTCTTCACTAGTAGGTCCATGTTGGATGTTAAAGAGTTGAACGAGAGTAATCCAGATT 691 Query 851 CTGCATTGTTGATCGAAGT-ACACAATGGCAATGTTCCAAA-TATAT-CTGATTTGTCAT 907 |||||||| |||| || || | | ||| ||||| ||||| | | | | |||||| ||| Sbjct 692 CTGCATTGGTGATTGATGTGA-ATGATGAAAATGTACCAAACT-TCTTC-GATTTGACAT 748 Query 908 ACAAAAGCGTTCCTGTGCACAGCGTAGAAGTTGGATCCTATGTTTTGGTTGGAACTGGTG 967 |||||||||| | |||| | | |||||||||||||||||| ||||||| |||||||||| Sbjct 749 ACAAAAGCGTACATGTGAAGAATGTAGAAGTTGGATCCTATATTTTGGTAGGAACTGGTG 808 Query 968 AGATTGTGCCTGTAGATTGCGAAGTCTATCAAGGTAGTGCTACAATTACAATTGAGCACT 1027 ||||||||||||| |||||| ||||||||||||||| ||| || || ||||||||||| | Sbjct 809 AGATTGTGCCTGTGGATTGCCAAGTCTATCAAGGTAATGCAACCATAACAATTGAGCATT 868 Query 1028 TGACTGGGGAAGTCAAGCCGTTGGAGGCAAAAGCTGGAGATAGAGTGCCTGGTGGTGCAA 1087 ||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct 869 TGACTGGGGAAGTGAAGCCATTGGAAGCAAAAGCTGGAGATAGAGTTCCTGGTGGTGCAA 928 Query 1088 GAAATTTGGATGGCAGAATGATTGTAAAG 1116 ||| |||| |||||||||| ||||| ||| Sbjct 929 GAACTTTGAATGGCAGAATTATTGTGAAG 957 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105967061590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5