BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37300.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944128 jgi|Araly1|944128|scaffold_700357.1 881 0.0
> Ahg944128 jgi|Araly1|944128|scaffold_700357.1
Length=566
Score = 881 bits (477), Expect = 0.0
Identities = 534/561 (95%), Gaps = 5/561 (1%)
Strand=Plus/Plus
Query 143 AAAGCAGTGGACAGAGACGACGATGAGTACGATGAAGCCAAGCCGGAGCGACGAAATATC 202
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 AAAGCAGTGGACAGAGAAGACGATGAGTACGATGAAGCCAAGTCGGAGCGACGAAATATC 60
Query 203 CGACCCGGAACAGCAGATCAAGAACGCGAACCAGATCAGAGCTGATTTCGATTCCTTGGC 262
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGACCCGGATCAACAGATCAAGAACGCGAACCAGATCAGAGCTGATTTCGATTCCTTGGC 120
Query 263 TCCCAAACGACCCACTAAACCCACTCGAAGCGAACCGGGATTTCCTGGATCTTTCTCTGC 322
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCCCAAACGACCCACTAAACCCACTCGAAGCGAACCGGGACCTCCTGGATCTTTCTCTGC 180
Query 323 TTCCGACAAAATCACCGACCATCCTGAAGCTGACAAATTCCAATCTCTCCAGTCACAAAC 382
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 CTCCGACAAAACCACCGACCATCCTGAAGCTGACAAATTCAAATCTCTCCAGTCACAAAC 240
Query 383 TCATGGTAAAGTTCTAGGTGAGGGAGATTCATCTGCAGTTCAAGATGAGTTCCTGGAAAC 442
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 241 TCATGGTAAAGTTCTAGGTGAGGGGGATTCATCTGCAGTTCAAGATGAGTTCTTGGAAAC 300
Query 443 AGAGTATTACTCAAATCTCACCGCCATTGATAAGCAACATCACACGACCGGAAGTGGGTT 502
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAGTATTACACAAATCTCACTGCCATTGATAAGCAACATCACACGACCGGAAGTGGGTT 360
Query 503 TATAAATGTGGTGAAGGAAGACA-ACGGTGAAGA-ATCCGAGGCCGTAACCGCCGCCGCA 560
|||||||||||| ||||||||| | ||||||| | |||||||||||||||||||||||
Sbjct 361 TATAAATGTGGTCAAGGAAGACGGA-GGTGAAGCGA-CCGAGGCCGTAACCGCCGCCGCA 418
Query 561 ATCGGAGACGGAGGAGAAAAAGCGGTTTACAGAAGCAATCCGGCGACGAACGAATGGATT 620
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCGGAGACGGAGAAGAAAAAGCGGTTTACAGAAGCAATCCGGCGACGAACGAATGGATT 478
Query 621 CCTGCGACGGAGGAAGATTTTGATTCGGAATCTTCGTCTAAACCAAACCGGAGCGAGAGT 680
|||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 479 CCTGCGGCGGAGGAAGATTTTGATTCCGAGTCTTCCTCTAAACCAAACCGGAGCGAGAGT 538
Query 681 TCTTGAACTGATCTTTCGAAA 701
||||||| ||||||||| |||
Sbjct 539 TCTTGAATTGATCTTTC-AAA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5