BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37310.1 Length=1892 Score E Sequences producing significant alignments: (Bits) Value Ahg490889 jgi|Araly1|490889|fgenesh2_kg.7__322__AT4G37310.1 2444 0.0 > Ahg490889 jgi|Araly1|490889|fgenesh2_kg.7__322__AT4G37310.1 Length=1745 Score = 2444 bits (1323), Expect = 0.0 Identities = 1582/1708 (93%), Gaps = 14/1708 (1%) Strand=Plus/Plus Query 75 AAGTTAGAGaaaaaaaGAAGAGAAAAGGAGTTATATATGGATTGTATTTTACTTATTCTG 134 |||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||| Sbjct 1 AAGTTAGAGAAAAAAAGAAGAGCAAAGGAGTTATGGAT-AATTATATTTTACTTATTCTC 59 Query 135 ACTACT-CTTGTTGCCATTTTCATCGTCAAGATTGTTCTCCTAGTCACTAAACCTAACAA 193 || | | ||||| | ||| ||||| ||||||| |||||||| || ||||||| |||| Sbjct 60 ACCA-TCCTTGTAACAATTCTCATCACCAAGATTTTTCTCCTATTCGCTAAACCAAACAT 118 Query 194 AAACCTTCCACCGTCGCCAAATATATGTTTTCCGATCATCGGACACCTTCACCTCCTCAA 253 ||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| Sbjct 119 AAACCTTCCACCGTCGCCACGTATCTGTTTTCCAATCATCGGACACCTTCACCTCCTCAA 178 Query 254 AAAGCCACTGCTACACCGGACTCTCAGCCATCTCTCCCACTCCCTCGGCCCCGTCTTTTC 313 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 179 ACAGCCACTGCTACACCGGACTCTCAGCCATCTCTCGCACTCCCTCGGCCCCGTCTTTTC 238 Query 314 TCTACGCCTCGGCTCTCGCCTTGCCGTTATCATCTCATCTCCAACGGCAGCCGAAGAATG 373 | ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| Sbjct 239 TATACGCCTCGGCTCTCGCCTCGCCGTTATCATCTCGTCTCCAACGGCAGCAGAAGAATG 298 Query 374 CTTCTTGACGAAAAACGACATCGTTTTAGCAAATCGGCCTCGTTTCATCATGGGCAAGTA 433 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CTTTTTGACGAAAAACGACATCGTTTTAGCAAATCGGCCTCGTTTCATCATGGGCAAGTA 358 Query 434 TGTGGCTTATGACTACACCTCCATGGTTACGGCTCCTTACGGTGACCACTGGCGAAACCT 493 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 359 CGTGGCTTATGACTACACCTCCATGGTTACGGCTCCTTACGGTGACCATTGGCGAAATCT 418 Query 494 CCGTCGTATCACCGCTTTAGAAGTCTTCTCCACAAATCGACTCAAC-GCTTCAGCGGAAA 552 ||||||||||||||| ||||||||||||||||| |||||||||||| || ||||| |||| Sbjct 419 CCGTCGTATCACCGCCTTAGAAGTCTTCTCCACGAATCGACTCAACGGC-TCAGCAGAAA 477 Query 553 TCCGACATGACGAAGTTAAGATGCTTCTCCAAAAGCTTCACGATTTATCTGTCGAACGCC 612 ||||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||||||| Sbjct 478 TCCGACAAGACGAAGTTAAGAGGCTTCTCCAAAAGCTTCACGGTTTATCTGTGGAACGCC 537 Query 613 CGGCTAAAGTGGAGTTACGACAGTTACTAACGGGTCTTACCCTAAATGTGATAATGAGAA 672 ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 538 CGGCTAACGTGGAGTTACGACCGTTACTAACTGGTCTTACCCTAAATGTGATAATGAGAA 597 Query 673 TGATGACCGGAAAGAGATTCTTCGAGGAAGATGATG-GCGGAAAGGCGGGGATAAGTTTG 731 ||||||||||||||||||||| ||| |||||||| | |||||||||||| ||| || ||| Sbjct 598 TGATGACCGGAAAGAGATTCTACGAAGAAGATGA-GAGCGGAAAGGCGGCGATGAGCTTG 656 Query 732 GAGTTCCGGGAACTAGTGGCGGAGATTCTAGAGCTCTCTGCGGCGGACAATCCAGCTGAT 791 |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 657 GAGTTCCGGGAACTTGTGGCGGAGATTCTAGAGCTCTCCGCGGCCGACAATCCAGCTGAT 716 Query 792 TTTTTGCCGGCTCTACGGTGGTTTGACTACAAAGGTTTGGTCAAGAGAGCAAAGAGGATT 851 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 717 TTTTTGCCGGCTCTACGGTGGTTTGACTACAAGGGTTTGGTCAAGAGAGCAAAAAGGATT 776 Query 852 GGAGAAAGGATGGATAGTTTATTACAAGGGTTTTTGGATGAGCATAGAGCTAACAAAGAC 911 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 GGAGAAAGGATGGATATTTTATTACAAGGGTTTTTGGATGAGCATAGAGCTAACAAAGAC 836 Query 912 AGATTGGAGTTTAAGAACACCATGATTGCTCATTTACTTGATTCTCAAGAAAAAGAGCCT 971 |||||||||||||||||||| ||||||| |||||| |||| ||||||||||||||||||| Sbjct 837 AGATTGGAGTTTAAGAACACTATGATTGGTCATTTGCTTGGTTCTCAAGAAAAAGAGCCT 896 Query 972 CATAACTACAGTGATCAAACCATCAAAGGTCTTATACTGATGATGGTAGTAGGAGGCACA 1031 ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| || Sbjct 897 CATTACTACAGTGATCAAACCATCAAAGGTCTTATACTGATGATGGCAATAGGAGGTACG 956 Query 1032 GATACATCGGCCTTAACCGTGGAATGGGCAATGTCAAATTTATTGAATCATCCACAAATA 1091 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 957 GATACATCGGCCTTAACCGTAGAATGGGCAATGTCAAATTTATTGAATCATCCACAAGTA 1016 Query 1092 CTAGAGACCACGAGACAAAACATTGATACTCAAATGGAAACATCAAGTAGTCGTCGTTTG 1151 ||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 1017 CTAGAGACCACGAGAAAAAACATTGATACTCAAATGGAATCATCAAGTACTCGTCAATTG 1076 Query 1152 TTGAAAGAAGAAGATTTGGTAAACATGAACTACTTGAAAAATGTTGTGTCGGAGACACTA 1211 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| Sbjct 1077 TTGAAAGAAGAAGATTTGGTGAACATGAACTACTTGAACAATGTTGTGTCCGAGACACTA 1136 Query 1212 AGACTTTACCCTGTGGCACCACTTATGGTTCCTCATGTGCCATCTTCTGACTGTGTAATC 1271 || ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1137 AGGCTTTATCCTGTGGCACCACTTATGGTTCCTCATTTGCCATCTTCTGATTGTGTAATT 1196 Query 1272 GGTGGATTCAACGTTCCACGTGATACGATCGTGTTGGTTAACTTGTGGGCTATACATCGA 1331 ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 GGTGGGTTTGATGTTCCACGTGATACGATCGTGTTGGTTAACTTGTGGGCTATACATCGA 1256 Query 1332 GATCCAAGCGTGTGGGATGATCCAACGTCATTTAAGCCGGAGAGATTTGAAGGGAGTGAT 1391 ||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 1257 GATCCAAGCGTGTGGGATGATCCGACGTCGTTCAAGCCAGAGAGATTTGAAGGGAGGGAT 1316 Query 1392 CAGTTTGGACATTACAATGGTAAAATGATGCCGTTTGGGTTAGGAAGACGGGCTTGTCCT 1451 ||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||||| Sbjct 1317 CAGTTTGGACATTACAATGGTAAGATGATGCCCTTTGGGTTAGGGAGACGGGTTTGTCCC 1376 Query 1452 GGGTTGAGTTTGGCTAACCGGGTTGTTGGGTTATTATTGGGTTCGATGATTCAGTGCTTT 1511 ||| |||||||||||||||||||||||||||| || |||||||||||| ||||||| ||| Sbjct 1377 GGGATGAGTTTGGCTAACCGGGTTGTTGGGTTGTTGTTGGGTTCGATGGTTCAGTGTTTT 1436 Query 1512 GAGTGGGAAAGCGGCTCAGGAGGTCAGGTTGATATGACTGAAGGTCCAGGACTTAGTTTG 1571 || |||||||| | ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1437 GAATGGGAAAGTGACTCAGGAGGTCAGGTTGATATGACTGAAGGTCCAGGACTTAGTATG 1496 Query 1572 CCTAAGGCTGAACCATTGGTTGTCACGTGCAGAACACGTGAGATGGCTTCCGAGTTGTTG 1631 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1497 CCTAAGGCTGAACCATTGGTTGTCACGTGCAGACCACGTGAGATGGCTTCCGAGTTGTTG 1556 Query 1632 TTCTTCGGATCAGAGCCAAGCAATAAGAATGTCTAGATTTGATTTTATAAATTTGTAAGT 1691 ||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||| Sbjct 1557 TTCTTCGGATCAGAGCCAAGCAATAAGAATGTCTAGATTGGATTTTGTAAAACTATAAGT 1616 Query 1692 TAATACATTATTACATGC-AT--ATATGATTCAGTGATTT--ATTA-AGCAGCAAAATGT 1745 ||||||||| |||||| || ||||||||||||||||| |||| | |||||||||| Sbjct 1617 TAATACATTTTTACATTATATGCATATGATTCAGTGATTTGGATTATA-CAGCAAAATGG 1675 Query 1746 TTGGAGACACtttttttttttttttGGC 1773 ||||||||||| ||||||||||||||| Sbjct 1676 TTGGAGACACTCATTTTTTTTTTTTGGC 1703 Score = 80.5 bits (43), Expect = 4e-14 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1806 CTTTATTGTAATCATGTAATGTCATATGCAATGTTGGTTGAGa 1848 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1703 CTTTATTGTAATCATGTAATGTCATATGCAATGTTGGTTGAGA 1745 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71076397170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5