BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37430.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490876 jgi|Araly1|490876|fgenesh2_kg.7__309__AT4G37430.1 2440 0.0
Ahg328029 jgi|Araly1|328029|fgenesh1_pm.C_scaffold_7000256 732 0.0
Ahg490879 jgi|Araly1|490879|fgenesh2_kg.7__312__AT4G37410.1 167 3e-40
Ahg490888 jgi|Araly1|490888|fgenesh2_kg.7__321__AT4G37320.1 69.4 8e-11
> Ahg490876 jgi|Araly1|490876|fgenesh2_kg.7__309__AT4G37430.1
Length=1637
Score = 2440 bits (1321), Expect = 0.0
Identities = 1520/1616 (94%), Gaps = 14/1616 (1%)
Strand=Plus/Plus
Query 83 CACAAGTAGaaaaaaaCACAAACATCCTGAAACTAGAAGAGAGAGACAAAATGTTATACT 142
|||||||||||| ||||||||||||||||||| | | | ||||| |||||||||| ||||
Sbjct 34 CACAAGTAGAAAGAAACACAAACATCCTGAAATTCG-A-AGAGA-ACAAAATGTTTTACT 90
Query 143 TCATCCTTCTCCCTCTTCTATTTCTTGTAATAAGTTACAAATTTCTCTACTCCAAAACGC 202
| |||||||| ||||| ||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct 91 TTATCCTTCTTCCTCTCCTATTTCTTGTTCTAACTTACAAATTCCTCTACTCCAAAACGC 150
Query 203 AACGTTTCAACCTTCCTCCAGGACCACCGTCACGACCCTTCGTCGGCCATCTCCACCTCA 262
|||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 151 AACGTTTCAAGCTTCCTCCGGGGCCACCGTCACGTCCCTTCGTCGGCCATCTCCACCTCA 210
Query 263 TGAAACCGCCGATCCACCGTCTCCTCCAACGCTACTCCAACCAATACGGCCCAATCTTTT 322
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 211 TGAAACCGCCGATCCACCGTCTCCTCCAACGTTACTCCAACCAATACGGCCCAATCTTTT 270
Query 323 CCCTCCGTTTCGGCTCCCGACGCGTCGTGGTCATAACATCCCCTTCTCTCGCCCAAGAAT 382
||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||
Sbjct 271 CCCTCCGTTTCGGCTCCCGCCGTGTCGTGGTCATAACTTCCCCTTCCCTCGCCCAAGAAT 330
Query 383 CCTTCACCGGCCAAAACGACATCGTTCTCTCCAGCCGGCCGCTCCAACTCACCGCCAAAT 442
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 331 CCTTCACCGGCCAAAACGACATCGTTCTTTCTAGCCGGCCGCTCCAACTCACCGCCAAAT 390
Query 443 ACGTCGCATACAACCACACAACCGTTGGTACAGCTCCTTACGGCGACCACTGGCGTAACC 502
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 391 ACGTCGCATACAACCACACAACCGTTGGAACAGCTCCTTACGGTGACCACTGGCGTAACC 450
Query 503 TCCGCCGCATTTGCTCCCAAGAGATTCTCTCCTCTCACCGTCTCATCAACTTCCAACACA 562
|||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 451 TCCGCCGCATTTGCTCTCAAGAGATTCTCTCCTCACACCGTCTCGTCAACTTCCAACACA 510
Query 563 TCCGCAAAGACGAGATCTTACGGATGCTCACACGCCTCTCACGTTACACACAAACCTCCA 622
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 511 TCCGCAAAGACGAGATCTTACGAATGCTCACTCGCCTCTCACGTTACACACAAACCTCCA 570
Query 623 ACGAAAGCAACGATTTCACTCACATCGAGCTAGAACCGCTCTTATCTGATCTAACATTCA 682
| | ||||||||| |||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 571 AAGGAAGCAACGACTTCACTCACATCGAACTCGAACCGCTCTTATCCGATCTAACATTCA 630
Query 683 ACAACATAGTAAGAATGGTTACAGGGAAGAGATATTACGGCGACGACGTCAACAACAAAG 742
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 631 ACAACATAGTAAGAATGGTTACAGGGAAGAGATATTACGGCGACGATGTCAACAACAAGG 690
Query 743 AAGAAGCAGAGCTATTCAAGAAGCTAGTCTACGATATCGCCATGTATAGCGGCGCTAATC 802
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 691 AAGAAGCAGAGCTATTCAAGAAGCTCGTCTACGATATCGCCATGTATAGCGGCGCTAACC 750
Query 803 ATTCCGCTGATTACTTACCAATACTAAAACTATTCGGAAACAAATTCGAGAAAGAAGTTA 862
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 751 ATTCCGCCGATTACTTACCAATACTAAAAATATTCGGAAACAAATTCGAGAAAGAAGTTA 810
Query 863 AAGCTATAGGCAAATCAATGGATGATATTTTGCAGCGTTTGTTAGATGAATGTAGAAGAG 922
|||||||||||||||| ||||||||||| ||||| |||||| | ||||||||||||||||
Sbjct 811 AAGCTATAGGCAAATCTATGGATGATATATTGCAACGTTTGCTCGATGAATGTAGAAGAG 870
Query 923 ATAAAGAAGGTAACACAATGGTCAATCATTTGATCTCTCTACAACAACAACAACCTGAGT 982
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 871 ATCAAGAAGGTAACACAATGGTCAATCATTTGCTCTCTCTACAACAACAAGAACCTGAGT 930
Query 983 ATTACACTGACGTTATCATCAAAGGCCTTATGATGTCGATGATGCTCGCCGGAACTGAGA 1042
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 931 ATTACACTGACGTTATCATCAAAGGCCTTATGATGTCGATGATGCTCGCCGGGACTGAGA 990
Query 1043 CCTCCGCTGTGACATTAGAGTGGGCGATGGCGAATCTACTGAGAAATCCAGAAGTACTGG 1102
||||||| || |||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 991 CCTCCGCCGTAACATTAGAGTGGGCGATGGCGAATTTACTGAGAAATCCACAAGTATTGG 1050
Query 1103 AGAAGGCGAGATCGGAGATCGATGAGAAGATCGGAAAAGATCGACTAATCGACGAATC-A 1161
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |
Sbjct 1051 AGAAGGCGAGATCGGAGATAGATGAGAAGATCGGAAAAGATCGACTAATCGACG-AGCAA 1109
Query 1162 GACATCGCAGTGCTTCCTTACCTCCAAAACGTCGTCTCCGAAACATTCCGGCTATTTCCG 1221
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1110 GACATCGCCGTGCTTCCTTACCTCCAGAACGTCGTCTCCGAAACATTCCGGCTATTTCCG 1169
Query 1222 GTGGCGCCGTTTCTAATCCCTCGATCACCGACGGACGACATGAAAATCGGAGGTTACGAC 1281
||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1170 GTGGCACCGTTTCTAATCCCTCGATCACCGACGGAGGATATGAAAATCGGCGGTTACGAC 1229
Query 1282 GTCCCGCGAGATACGATAGTGATGGTTAACGCTTGGGCTATACATAGAGATCCAGAGATT 1341
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1230 GTCCCGCGAGATACGATAGTGATGGTAAACGCTTGGGCTATACATAGAGATCCAGAGCTT 1289
Query 1342 TGGGAGGAGCCAGAGAAGTTTAATCCAGATCGATATAATGACGGATGCGGAAGCGATTAC 1401
|||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct 1290 TGGGAGGAGCCAGAGAAGTTTAATCCAGATCGGTATAACGAAGGATGCGGAAGTGATTAT 1349
Query 1402 TATGTTTACAAGCTGATGCCGTTTGGGAATGGCCGGAGAACTTGTCCCGGCGCCGGATTA 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 TATGTTTACAAGCTGATGCCGTTTGGGAATGGCCGGAGAACTTGTCCCGGCGCCGGATTA 1409
Query 1462 GGTCAGAGGATTGTGACATTGGCGCTTGGATCGTTGATTCAATGCTTTGAATGGGAGAAT 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 GGTCAGAGGATTGTGACATTGGCGCTTGGATCGTTGATTCAATGCTTTGAATGGGAGAAT 1469
Query 1522 GTGAAAGGGGAAGAGATGGATATGTCTGAGAGTACTGGGTTGGGTATGCGTAAGATGGAT 1581
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1470 GTGAAAGGAGAAGAGATGGATATGTCTGAGAGTGCTGGGTTGGGTATGCGTAAGATGGAT 1529
Query 1582 CCTTTACGGGCCATGTGTAGGCCTAGGCCCATTATGTCAAAGCTTTTACTCTAATAAGAT 1641
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 1530 CCTTTACGGGCCATGTGTAGGCCCAGGCCCATTATGTCTAAGCTTTTACTCTAATAA-A- 1587
Query 1642 GAGTAGAGGTTaaaaaagaaaaa-aTAACTTATTGGATGTAACTGGTAATTATCTT 1696
| | | | |||||| || || |||| |||||||||||||||||||||||
Sbjct 1588 -A--A-ATG--AAAAAATAACTTCATGTCTTAATGGATGTAACTGGTAATTATCTT 1637
> Ahg328029 jgi|Araly1|328029|fgenesh1_pm.C_scaffold_7000256
Length=1500
Score = 732 bits (396), Expect = 0.0
Identities = 1122/1459 (77%), Gaps = 104/1459 (7%)
Strand=Plus/Plus
Query 177 TTACAAA-T-TTC-TCTA-CTCCAAAACGCAACGTTTCAACCTTCCTCCAGGACCACCGT 232
||||||| | ||| || | ||||||| |||| ||||||||||| ||||| ||||| |
Sbjct 48 TTACAAATTATTCTTC-ACCTCCAAACCGCAGCGTTTCAACCTCCCTCCCTCTCCACC-T 105
Query 233 CA--C-GACCC-TTCGTCGGCCATCTCCACCTCATGAAACCGCCGATCCACCGTCTCCTC 288
| | ||| || ||||||| | ||||||| | ||||||||| ||||||||| | ||
Sbjct 106 TATTCTCTCCCAATCCTCGGCCACCACCACCTCCTAAAACCGCCGGTCCACCGTCACTTC 165
Query 289 CAACG-CTACTCCAACCAAT--ACGGCCCAATCTTTTCCCTCC-GTTTCGGCTCCCGACG 344
|| || || ||||| ||| ||||||||||||| ||||||| ||| |||||||| ||
Sbjct 166 CACCGCCT-TTCCAA--AATACACGGCCCAATCTTCTCCCTCCAATTT-GGCTCCCGCCG 221
Query 345 CGTCGTGGTCATAACATCC-CCTTCTCTCGCCCA-AGAATCCTTCACCGGCCAAAACGAC 402
| ||| || || | ||| || || |||| | | | ||| |||||| ||||||||||||
Sbjct 222 TGCCGTCGTAATCTCCTCCTCC-TCACTCG-CAACACAATGCTTCACAGGCCAAAACGAC 279
Query 403 ATCGTTCTCTCCAGCCGGCC--GCTCCAACTCACCGCCAAATACGTCGCATACAACCACA 460
||| || | || | |||||| | | | || ||||| ||||| ||||| |||||| |||
Sbjct 280 ATCATTTTATCAAACCGGCCTTGTTTC--CTAACCGCTAAATATGTCGCTTACAACTACA 337
Query 461 CAACCGTTGGTACAGCTCCTTACGGCGACCACTGGCGTAACCTCCGCCGCATTTGCTCCC 520
|||||||||| || || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 338 CAACCGTTGGAACCGCGCCTTATGGGGACCACTGGCGTAACCTCCGCCGCATTTGCTCCC 397
Query 521 AAGAGATTCTCTCCTCTCACCGTCTCATCAA-CTTCCAACACATCCGCAAAGACGAGATC 579
|| || |||||||| ||||||||| ||| ||||| ||||||||||||||||| |||
Sbjct 398 TGGAAATCCTCTCCTCGAACCGTCTCA-CAAACTTCCTCCACATCCGCAAAGACGAAATC 456
Query 580 TTACGGATGCTCAC-ACGCCTCTCACGTTACACACAAACCTCCAACGAAAGCAACGATTT 638
|| |||||||| | | || |||||| || || ||| |||| | |||
Sbjct 457 CGCCGCATGCTCACGA-GACTTTCACGTGACG--------TC-AAC-AAAG-A--GAT-- 500
Query 639 CACTCACATCGAGCTAGAACCGCTCTTATCTGATCTAACATTCAACAACATAGTAAGAAT 698
| ||||| || |||||||| || |||||||| ||||||||||| ||||| ||
Sbjct 501 C---------GAGCTCGAGCCGCTCTTGTCCGATCTAACGTTCAACAACATCGTAAGGAT 551
Query 699 GGTTACAGGGAAGAGATATTACGGCGACGACGTCAACAACAAAGAAGAAGCAGA--GCTA 756
|||||| ||||||||||| ||||||||||| ||| | ||| ||||||| || || | |
Sbjct 552 GGTTACTGGGAAGAGATACTACGGCGACGAAGTCCATAACGAAGAAGAGGC-GAATGTT- 609
Query 757 TTCAAGAAGCTAGTCTACGATATCGCC-A-TGTATAGCGGCGCTAATCATTCCGCTGATT 814
|||||||| || ||| ||||||| | | |||| ||||||| | ||| ||| ||||
Sbjct 610 TTCAAGAAACTGGTCGCCGATATCAACGACTGTA--GCGGCGCGAGGCATCCCGGAGATT 667
Query 815 ACTTACCAAT-ACTAAA-ACTATTCGGAAACAAATTCGAGAAAGAA-GTTAAAGCTATAG 871
||||||| | | | || | | |||||| | || ||||| ||| || |||||| | |
Sbjct 668 ACTTACCCTTCA-TGAAGA-TGTTCGGAGGGAGCTTTGAGAA-GAAAGTGAAAGCTCTTG 724
Query 872 -GCAAATCAATGGATGATATTTTGCAGCGTTTG-TTAGATGAATGTA-GAAGAGATAAAG 928
| || || |||||||| || |||||||||||| || || || |||| || |||||||||
Sbjct 725 CGGAA-TCCATGGATGAGATCTTGCAGCGTTTGCTT-GAAGAGTGTAAGA-GAGATAAAG 781
Query 929 AAGGTAACACAATGGTCAATCATTTGATCTCTCTACAACAACAACAACCTGAGTATTACA 988
| |||||||| ||||| ||||||||| ||||||| |||||||| |||| ||||||||||
Sbjct 782 ACGGTAACACTATGGTTAATCATTTGCTCTCTCTTCAACAACATGAACCAGAGTATTACA 841
Query 989 CTGACGTTA-TCATCAAAGGCCTTATGATGT-CGATGATGCTCGCCGGAACTGAGACCTC 1046
||||||| | | ||||||||||| ||| || | |||||| |||||||||| || || ||
Sbjct 842 CTGACGTCACT-ATCAAAGGCCTAATGCTGGGC-ATGATGATCGCCGGAACAGATACTTC 899
Query 1047 CGCTGTGACATTAGAGTGGGCGATGGCGAATCTACTGAGAA--ATCCAGAAGTACTG-GA 1103
|| ||||| | |||||||||||| ||| | | || | || ||||||| || || ||
Sbjct 900 TGCCGTGACGCTGGAGTGGGCGATGTCGAGTTTGCT-A-AATCATCCAGA-GT-CTTTGA 955
Query 1104 GAAG-GCGAGA-TCGGAGATCGATGAGAAGATCGGAAAAGATCGACTAATCGACGAATCA 1161
|| |||| | | | |||| || ||||| |||||| |||| || | ||||||||| ||
Sbjct 956 AAAAAGCGAAACTAG-AGATTGACGAGAAAATCGGACAAGAACGTTTGATCGACGAACCA 1014
Query 1162 GACATCGCAGTGCTT-CCTTACCTCCAAAACGTCGTCTCCGAAACATTCCGGCTATTTCC 1220
||||||||| ||| |||||||| |||||| | || | |||||||||||| ||| ||
Sbjct 1015 GACATCGCAAA-CTTGCCTTACCTTCAAAACATAGTGTTGGAAACATTCCGGTTATACCC 1073
Query 1221 GGTGGCGCCGTTTCTAATCCCTCGATCACCGACGGACGACATGAAAATCGGAGGTTACGA 1280
|| ||||||| ||||| | || |||||||| |||| || || ||| | ||||| |||||
Sbjct 1074 GGCGGCGCCGCTTCTAGTACCAAGATCACCGTCGGAGGATATTAAAGTTGGAGGATACGA 1133
Query 1281 CGTCCCGCGAGATACGATAGTGATGGTTAACGCTTGGGCTATACATAGAGATCCAGAGAT 1340
||| || || | ||||| ||||||||||| || ||||||||||| || ||||||||| |
Sbjct 1134 CGTGCCACGTGGCACGATGGTGATGGTTAATGCCTGGGCTATACACAGGGATCCAGAGCT 1193
Query 1341 TTGGGAGGAGCCAGAGAAGTTTAATCCAGATCGATATAATGACGGATGC-GGAAGCG-AT 1398
||| | || || ||||||||||| ||||| | | ||| |||||| | ||| | | |
Sbjct 1194 CTGGAATGAACCGGAGAAGTTTAAACCAGAGAGGTTTAACGACGGA-GAAGGAGGAGGAG 1252
Query 1399 TACTATGTTTACAAGCTGATGCCGTTTGGGAATGGCCGGAGAACTTGTCCCGGCGCCGGA 1458
| | ||| | ||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 1253 AAG-ACGTTCATAAGCTGATGCCGTTTGGGAATGGACGGAGATCGTGTCCCGGCGCCGGA 1311
Query 1459 TTAGGTCAGAGGATTGTGACATTGGCGCTT-GGATCGTTGATTCAATGCTTTGAATGGGA 1517
||||| |||| ||| ||||| |||||| || || ||||||||||||||||| || |||||
Sbjct 1312 TTAGGGCAGAAGATCGTGACGTTGGCG-TTAGGTTCGTTGATTCAATGCTTCGACTGGGA 1370
Query 1518 GAATGTGAAAGGGGAAG-AGATGGATATGTCTGAGAGTACTGGGT-TGG-GTATGCGTAA 1574
|| || || || |||| || | |||||| | |||| | | |||| ||| | ||||||||
Sbjct 1371 AAAAGTCAATGGCGAAGCAG-TCGATATGACGGAGACTCC-GGGTATGGCG-ATGCGTAA 1427
Query 1575 GATGGAT-CCTTTACGGGC 1592
|| | | |||||| ||||
Sbjct 1428 GAAAG-TGCCTTTATGGGC 1445
> Ahg490879 jgi|Araly1|490879|fgenesh2_kg.7__312__AT4G37410.1
Length=1641
Score = 167 bits (90), Expect = 3e-40
Identities = 291/384 (76%), Gaps = 30/384 (8%)
Strand=Plus/Plus
Query 238 CCCTTCGTCGGCCATCTCCACCTCATGAAACCGCCGATCCACCGTCTCCTCCAACG-CTA 296
||| || |||| || | || |||||| ||||||||| | ||||||||| |||| || ||
Sbjct 180 CCCGTCCTCGGTCACCACCTCCTCATCAAACCGCCGGTTCACCGTCTCTTCCACCGCCT- 238
Query 297 CTCCAACCAAT--ACGGCCCAATCTTTTCCCTCCG-TTTCGGCTCCCGACGCGTCGTGGT 353
|||||| || ||||||||||||| | |||||| || || ||||| || | ||| ||
Sbjct 239 CTCCAA--TATCCACGGCCCAATCTTCTACCTCCGACTT-GGTTCCCGCCGTGCCGTCGT 295
Query 354 CATAACATCC-CCTTCTCTC-GCCCA-AGAATCCTTCACCGGCCAAAACGACATCGTTCT 410
||| | ||| ||| ||| | | | | ||||| ||||| || |||||||| ||||| |
Sbjct 296 CAT--C-TCCTCCTCCTCACTGGCAAGAGAATGTTTCACAGGTCAAAACGATGTCGTTGT 352
Query 411 CTCCAGCCGGCCGCTC--CAACTCACCGCCAAATACGTCGCATACAACCACACAACCGTT 468
|| | || ||| ||| || ||| | ||||| ||||| |||||| |||||||| |
Sbjct 353 ATCAAACC-GCC-CTCGTTTCCTAACCTCTAAATATGTCGCTTACAACTACACAACCATC 410
Query 469 GGTA-CAGC-TCCTTACGGCGACCACTGGCGTAACCTCCGCCGCATTTGCTCCCAAGAGA 526
| | || | | ||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 411 GCAACCA-CAT-CTTACGGTGACCACTGGCGTAACCTCCGCCGCATTTGCTCCCTCGAAA 468
Query 527 TTC-TCTCCTCTCACCGTCTCATC-AACTTCCAACACATCCGCAAAGACGAGATCTTA-C 583
| | ||||||| | ||||| | | || || | |||||||||||||| |||||| | |
Sbjct 469 T-CGTCTCCTCAAAACGTCT-AGCCAATTTTCTCCACATCCGCAAAGAGGAGATCC-AGC 525
Query 584 GGATGCTCAC-ACGCCTCTCACGT 606
| |||||||| | || ||||||||
Sbjct 526 GCATGCTCACGAGGC-TCTCACGT 548
> Ahg490888 jgi|Araly1|490888|fgenesh2_kg.7__321__AT4G37320.1
Length=1553
Score = 69.4 bits (37), Expect = 8e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 473 CAGCTCCTTACGGCGACCACTGGCGTAACCTCCGCCGCAT 512
|||| |||||||||||||||||||||||||||||||||||
Sbjct 393 CAGCACCTTACGGCGACCACTGGCGTAACCTCCGCCGCAT 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5