BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37550.1
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490862 jgi|Araly1|490862|fgenesh2_kg.7__295__AT4G37550.1 2302 0.0
> Ahg490862 jgi|Araly1|490862|fgenesh2_kg.7__295__AT4G37550.1
Length=1504
Score = 2302 bits (1246), Expect = 0.0
Identities = 1403/1479 (95%), Gaps = 10/1479 (1%)
Strand=Plus/Plus
Query 12 TTTTCACTGTATCAAGGACaaaagaaagagagaaaacaaaagagttatacagagagaaaa 71
|||| |||||| |||||||||||||||||||||||| ||||||| |||| ||||| ||||
Sbjct 1 TTTTTACTGTAACAAGGACAAAAGAAAGAGAGAAAATAAAAGAGATATATAGAGA-AAAA 59
Query 72 -cgtgaatagagagaTCACTGTACTTATTGGGTTTTGATCTTTGATGGCTCCACTGAGTC 130
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 TCGTGAATAGAGAGATCACTGTACTTATTGGGTTTTGATGTTTGATGGCTCCACTGAGTC 119
Query 131 CAAGAGTAGTGGTGAAGGTGGATTTGAAGAAGAAGCCATGGCAGCAGGACCAGCCATTGC 190
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 120 CAAGAGTGGTGGTGAAGGTGGATTTGAAGAAGAAGCCATGGCAGCAGAACCAGCCACTGC 179
Query 191 ACAATAGATGGCATCCGGAGATACCACCAGTAGCAGAGGTCAAGGCTGGTGAGTTTTTCC 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACAATAGATGGCATCCGGAGATACCACCAGTAGCAGAGGTCAAGGCTGGTGAGTTTTTCC 239
Query 251 GGGTAGAAATGATTGA-TGCAATGGGAGGTGTTATCAAAGACAATGACTCTGCAAGCGAT 309
|||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GGGTGGAAATGATTGATTG-TATGGGAGGTGTTGTCAAAGACAATGACTCTGCAAGCGAT 298
Query 310 ATCAAGAAC-CTAGTCCTAACTACTACTCATCACCTAAGTGGGCCGATTAGGGTTGTAGA 368
||||||||| | || |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 299 ATCAAGAACGC-AGACCTAACCACTACTCATCACCTAAGTGGGCCGATTAGGGTTGTGGA 357
Query 369 TGAGGAAGGTGTTGCAGCTAAAG-CAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGG 427
|||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 TGAGGATGGTGTTGCAGCT-AAGCCAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGG 416
Query 428 GTCCTCTTCCAGGAGATGAATGGGGATTCACTGGTTCGTTTGATAGAGAGAATGGTGGCG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 GTCCTCTTCCAGGAGATGAATGGGGATTCACTGGTTCGTTTGATAGAGAGAATGGCGGCG 476
Query 488 GTTTCTTGACTGACCATTTCCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATCT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTTTCTTGACTGACCATTTCCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATCT 536
Query 548 ATGCCTACTCTCCTCAGATTCCTGGAGTACGATTTCCGGGTTTGACACACCCAGGAGTCA 607
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATGCCTACTCTCCTCAAATTCCTGGAGTACGATTTCCGGGTTTGACACACCCAGGAGTCA 596
Query 608 TTGGCACTGCACCATCGAATG-AACTCTTGAGAATATGGAATGATAGGGAAAGACAATTA 666
||||||| || ||||||| || ||||| |||||||||||||||| |||||||||||||||
Sbjct 597 TTGGCACCGCGCCATCGA-TGGAACTCCTGAGAATATGGAATGAAAGGGAAAGACAATTA 655
Query 667 GAAGAAAGTGGTGTTGAGTCCCTAACACTATGTGAGGTAGTGCATCAGCGGCCATTAGCA 726
|||||||||||| | |||||| ||||||||||||||| |||||||| |||||||| |||
Sbjct 656 GAAGAAAGTGGTCTCAAGTCCCCAACACTATGTGAGGTTGTGCATCAACGGCCATTGGCA 715
Query 727 TGCCTACCAACAACTAAAGGATGTCTCCTCGGGAATATTGAAGAAGGAACACCAGAATGG 786
|||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 716 AACCTACCAACAGCTAAAGGATGCCTCCTAGGGAACATTGAAGAAGGAACACCAGAATGG 775
Query 787 GAAAGGATTGCAAACGAGGCTGCGAGGACAATACCAGGAAGAGAAAACGGAGGAAACTGT 846
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 776 GAAAGGATTGCTAACGAGGCTGCGAGGACGATACCAGGAAGAGAAAACGGAGGAAACTGT 835
Query 847 GACATTAAAAACCTAAGCAGAGGCTCTAAAATATATCTTCCAGTATTTGTTGAAGGGGCT 906
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 836 GACATTAAAAACCTAAGCAGAGGCTCTAAAATATATCTTCCAGTGTTTGTAGAAGGGGCT 895
Query 907 AATCTAAGCACAGGAGACATGCATTTCTCACAAGGTGATGGTGAGATCTCGTTCTGCGGA 966
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 896 AATCTAAGCACAGGAGACATGCATTTCTCGCAAGGTGATGGTGAGATCTCATTCTGTGGA 955
Query 967 GCCATCGAGATGAGTGGATTTCTAGAACTCAAGTGTGAAATCATAAGAAATGGGATGCAA 1026
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 956 GCCATCGAGATGAGTGGATTTCTAGAACTCAAGTGTGAAATCATAAGGAATGGGATGCAA 1015
Query 1027 GAGTACCTTACGCCAATGGGACCTACCCCTCTCCATGTAAACCCAATCTTTGAGATAGGA 1086
|| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1016 GAATACCTTACGCCAATGGGACCGACCCCGCTCCATGTAAACCCAATCTTTGAGATAGGG 1075
Query 1087 CCAGTGGAACCGAGGTTCTCAGAGTGGCTTGTCTTCGAAGGTATCAGTGTCGATGAGAGC 1146
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCAGTTGAACCGAGATTCTCAGAATGGCTTGTCTTCGAAGGTATCAGTGTCGATGAGAGC 1135
Query 1147 GGAAAACAGCATTACCTAGATGCAACAGTTGCTTACAAACGGGCAGTTCTCAACGCCATA 1206
|| | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GGGAGACAACATTACCTGGATGCAACAGTTGCTTACAAACGGGCAGTTCTCAACGCCATA 1195
Query 1207 GACTATCTTTTCAAATTTGGTTACTCAAAAGAACAGGTGTACCTCTTACTCTCATGTTGT 1266
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1196 GACTATCTCTTCAAATTTGGTTACTCAAAAGAACAGGTGTACCTCTTGCTCTCATGTTGT 1255
Query 1267 CCATGTGAAGGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTAGCA 1326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1256 CCATGTGAAGGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTTGCA 1315
Query 1327 ATACCTACAGCCATCTTTGATCAGGATATTAGGCCAAAGAATCGGAAGGTTCCAGTAGGA 1386
|||||||| ||||||||||||||||||||| ||||||||| || |||||||||| ||||
Sbjct 1316 ATACCTACTGCCATCTTTGATCAGGATATTCGGCCAAAGACCCGAAAGGTTCCAGCAGGA 1375
Query 1387 CCTCGGGTTGTGAGGAAACCAGATGTACTGAAGAGCACATATGATGGAAAGCTTCCAATT 1446
|||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1376 CCTCGGATAGTGAGGAAACCAGACGTACTGAAGAGCACATATGATGGAAAGCTTCCAATT 1435
Query 1447 ACAAAGAATCCAAGTTCTTCCTCTTAGCTTCTACaaaaa 1485
|||||||||||||||||||||||||||||||||||||||
Sbjct 1436 ACAAAGAATCCAAGTTCTTCCTCTTAGCTTCTACAAAAA 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5