BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37650.1 Length=1975 Score E Sequences producing significant alignments: (Bits) Value Ahg944085 jgi|Araly1|944085|scaffold_700314.1 2697 0.0 > Ahg944085 jgi|Araly1|944085|scaffold_700314.1 Length=1636 Score = 2697 bits (1460), Expect = 0.0 Identities = 1567/1620 (97%), Gaps = 1/1620 (0%) Strand=Plus/Plus Query 75 aaaaaaaaaaaaTGGATACTCTCTTTAGACTAGTCAGTCTCCAACAACAACAACAATCCG 134 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10 AAACAAAAAAAATGGATACTCTCTTTAGACTAGTCAGTCTCCAACAACAACAACAATCCG 69 Query 135 ATAGTATCATTACAAATCAATCTTCGTTAAGCAGAACTTCCACCACCACTACTGGCTCTC 194 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 70 ATAGTATCATTACAAATCAATCTTCGTTAAGCAGAACCTCCACCACCACTACTGGCTCTC 129 Query 195 CACAAACTGCTTATCACTACAACTTTCCACAAAACGACGTCGTCGAAGAATGCTTCAACT 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 CACAAACTGCTTATCACTACAACTTTCCACAAAACGACGTCGTCGAAGAATGCTTCAACT 189 Query 255 TTTTCATGGATGAAGAAGACCTTTCCTCTTCTTCTTCTCACCACAACCATCACAACCACA 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 TTTTCATGGATGAAGAAGACCTTTCCTCTTCTTCTTCTCACCACAACCATCACAACCACA 249 Query 315 ACAATCCTAATACTTACTACTCTCCTTTCACTACTCCCACCCAATACCATCCCGCCACAT 374 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 250 ACAATCCTAATACTTACTACTCTCCTTTCACTACTCCCACCCAATACCATCCTACCACGT 309 Query 375 CATCAACCCCTTCCTCCACCGCCGCAGCCGCAGCTTTAGCCTCGCCTTACTCCTCCTCCG 434 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 310 CATCAACCCCTTCCTCCACCGCCGCAGCCGCAGCTTTAGCCTCGCCGTACTCCTCCTCTG 369 Query 435 GCCACCATAATGACCCTTCCGCGTTCTCCATACCTCAAACTCCTCCGTCCTTCGACTTCT 494 ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 370 GCCACCACAATGACCCTTCCGCTTTCTCCATCCCTCAAACTCCTCCGTCCTTCGACTTCT 429 Query 495 CAGCCAATGCCAAGTGGGCAGACTCGGTCCTTCTTGAAGCGGCACGTGCCTTCTCCGACA 554 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 430 CAGCCAATGCCAAGTGGGCAGACTCGGTTCTTCTTGAAGCGGCACGTGCCTTCTCCGACA 489 Query 555 AAGACACTGCACGTGCGCAACAAATCCTATGGACGCTCAACGAGCTCTCTTCTCCGTACG 614 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 490 AAGACACCGCACGTGCGCAACAAATCCTATGGACGCTTAACGAGCTCTCTTCTCCGTACG 549 Query 615 GAGACACCGAGCAAAAACTGGCTTCTTACTTCCTCCAAGCTCTCTTCAACCGCATGACCG 674 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 GAGACACCGAGCAGAAACTGGCTTCTTACTTCCTCCAAGCTCTCTTCAACCGCATGACCG 609 Query 675 GTTCAGGCGAACGATGCTACCGAACCATGGTAACAGCTGCAGCCACAGAGAAGACTTGCT 734 ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 610 GTTCAGGTGAACGATGCTACAGAACCATGGTAACAGCTGCAGCCACAGAGAAGACATGCT 669 Query 735 CCTTCGAGTCAACGCGAAAAACTGTACTAAAGTTCCAAGAAGTTAGCCCCTGGGCCACGT 794 | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 670 CTTTCGAGTCAACGCGCAAAACTGTACTCAAGTTCCAAGAAGTTAGCCCCTGGGCCACGT 729 Query 795 TTGGACACGTGGCGGCAAACGGAGCAATCTTGGAAGCAGTAGACGGAGAGGCAAAGATCC 854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 730 TTGGACACGTGGCGGCAAACGGAGCAATCTTGGAAGCAGTAGACGGAGAGGCAAAGATCC 789 Query 855 ACATCGTTGACATAAGCTCCACGTTTTGCACTCAATGGCCGACTCTTCTAGAAGCTTTAG 914 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 790 ATATCGTTGACATAAGCTCAACGTTTTGCACTCAATGGCCGACTCTTCTAGAAGCTTTAG 849 Query 915 CCACAAGATCAGACGACACGCCTCACCTAAGGCTAACCACAGTTGTCGTGGCCAACAAGT 974 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 850 CCACGAGATCAGACGACACGCCTCACCTAAGGCTAACCACAGTAGTCGTGGCCAACAAGT 909 Query 975 TTGTCAACGATCAAACGGCGTCGCATCGGATGATGAAAGAGATCGGAAACCGAATGGAGA 1034 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 910 TTGTCAACGATCAAACGGCGTCGCATCGGATGATGAAAGAGATCGGAAACCGAATGGAGA 969 Query 1035 AATTCGCTAGGCTTATGGGAGTTCCTTTCAAATTTAACATTATTCATCACGTTGGAGATT 1094 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 970 AATTCGCTAGGCTTATGGGAGTTCCTTTTAAATTCAACATTATTCATCACGTTGGAGATT 1029 Query 1095 TATCTGAGTTTGATCTCAACGAACTCGACGTTAAACCAGACGAAGTCTTGGCCATTAACT 1154 | |||||||||||||||||||| || || ||||||||||||||||||||||||| |||| Sbjct 1030 TGTCTGAGTTTGATCTCAACGAGCTAGATATTAAACCAGACGAAGTCTTGGCCATCAACT 1089 Query 1155 GCGTAGGCGCGATGCATGGGATCGCTTCACGTGGAAGCCCTAGAGACGCTGTGATATCGA 1214 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1090 GCGTAGGCGCGATGCATGGGATCGCTCCACGTGGAAGCCCTAGAGACGCTGTGATATCGA 1149 Query 1215 GTTTCCGACGGTTAAGACCGAGGATTGTGACGGTCGTAGAAGAAGAAGCTGATCTTGTCG 1274 ||||| || ||||||||||||||||||||||| | |||||||||||||| |||||||||| Sbjct 1150 GTTTCAGAAGGTTAAGACCGAGGATTGTGACGATTGTAGAAGAAGAAGCGGATCTTGTCG 1209 Query 1275 GAGAAGAAGAAGGTGGCTTTGATGATGAGTTCTTGAGAGGGTTTGGAGAATGTTTACGAT 1334 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1210 GAGAAGAAGAAGGTGGCTTTGATGATGAGTTCTTGAGAGGCTTTGGAGAATGTTTACGAT 1269 Query 1335 GGTTTAGGGTTTGCTTCGAGTCATGGGAAGAGAGTTTTCCAAGGACGAGCAACGAGAGGT 1394 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1270 GGTTTAGGGTTTGCTTCGAGTCATGGGAAGAGAGTTTTCCGAGGACAAGCAACGAGAGGT 1329 Query 1395 TGATGCTAGAGCGTGCAGCGGGACGTGCGATCGTTGATCTTGTGGCTTGTGAGCCGTCGG 1454 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330 TGATGCTAGAGCGTGCTGCGGGACGTGCGATCGTTGATCTTGTGGCTTGTGAGCCGTCGG 1389 Query 1455 ATTCCACGGAGAGGCGAGAGACAGCGAGGAAGTGGTCGAGGAGGATGAGGAATAGTGGGT 1514 |||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1390 ATTCGACGGAGAGGAGAGAGACGGCGAGGAAGTGGTCGAGGAGGATGAGGAACGGTGGGT 1449 Query 1515 TTGGAGCGGTGGGGTATAGTGATGAGGTGGCGGATGATGTCAGAGCTTTGTTGAGGAGAT 1574 |||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||| Sbjct 1450 TTGGAGCGGTCGGGTATAGTGATGAGGTGGCGGATGACGTCAGAGCTTTATTGCGGAGAT 1509 Query 1575 ATAAAGAAGGTGTTTGGTCGATGGTACAGTGTCCTGATGCCGCCGGAATATTCCTTTGTT 1634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1510 ATAAAGAAGGTGTTTGGTCGATGGTACAGTGTCCTGATGCCGCCGGAATATTCCTTTGTT 1569 Query 1635 GGAGAGATCAGCCGGTGGTTTGGGCTAGTGCGTGGCGGCCAACGTAAAGGG-TTGttttt 1693 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1570 GGAGAGATCAGCCGGTGGTTTGGGCTAGTGCGTGGCGGCCAACGTAAAGGGATTTTTTTT 1629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74237887505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5