BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37680.1
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490848 jgi|Araly1|490848|fgenesh2_kg.7__281__AT4G37680.1 2185 0.0
Ahg352947 jgi|Araly1|352947|fgenesh1_pg.C_scaffold_7000120 414 8e-115
Ahg944078 jgi|Araly1|944078|scaffold_700307.1 176 4e-43
> Ahg490848 jgi|Araly1|490848|fgenesh2_kg.7__281__AT4G37680.1
Length=1551
Score = 2185 bits (1183), Expect = 0.0
Identities = 1442/1562 (92%), Gaps = 37/1562 (2%)
Strand=Plus/Plus
Query 11 CTTCCATCGTCGTCTTCTATTTTTTCTTCTTTCTTCGATTTCAT-A--C---CAAAAC-A 63
|||||||| ||||||||||||||| |||||||| |||||||||| | | |||||| |
Sbjct 1 CTTCCATCTTCGTCTTCTATTTTTCCTTCTTTCATCGATTTCATAATTCATACAAAACAA 60
Query 64 AGAACTCTCTGTTTTCGACAAAAACGAAACCTTGAGATCTATTTTGATTGAC-TTTTAAG 122
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 61 AGAACTCTCTGTTTTCGACAAAAACGAAACCTTGAGATCTATTTTGCTTGACTTTTTATT 120
Query 123 AAAGAGAGAGATCTTTCTTAGAAGATTTTG-TCTCGTCGGCATTGAAGATCCAGGGTTT- 180
| | ||| ||| || ||||| ||||||||||||||||||||||||||||
Sbjct 121 TTCCA-AAAGA-ATTTGAGAGTTTTTTTTGTTCTCGTCGGCATTGAAGATCCAGGGTTTG 178
Query 181 -G-TCTTTCGAAATTCAGAGAG-AA-AATGGGTGATGA-G--GCAGAGATCAAGGAACAT 233
| ||||||||||||||||||| || |||||||||||| | ||||||||||||||||||
Sbjct 179 AGATCTTTCGAAATTCAGAGAGAAAGAATGGGTGATGAGGACGCAGAGATCAAGGAACAT 238
Query 234 TT-AAAGCCACAAGCTTCATCTGAAACAATGGACAAGAAACATAATGTGAAAGGGAAGAG 292
|| ||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 239 TTGAAA-CCTCAAGCTTCATCTGAAACAATGGAGAAGAAACACAATGTGAAAGGGAAGAG 297
Query 293 GTTATGGCAGAAAGTCAAGTATCAATTGGTGGAGTTTCATTCATTGCCTGCTTATTTAAG 352
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 ATTATGGCAGAAAGTGAAGTATCAATTGGTGGAGTATCATTCATTGCCTGCTTATTTAAG 357
Query 353 AGACAATGAGTACATCATTGGTCATTACCGATCCGAATGGCCGATCAAACAGATTCTTCT 412
|||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 358 AGACAATGAGTATATCATCGGTCATTACCGATCCGAATGGCCGATTAAACAGATCCTTCT 417
Query 413 CAGCATCTTTACCATTCATAATGAGACTTTGAATGTTTGGACGCACTTGATTGGGTTTTT 472
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 CAGCATCTTTACCATCCATAATGAGACCTTGAATGTTTGGACGCACTTGATTGGGTTTTT 477
Query 473 CCTGTTTTTGGCGCTCACTATATACACTGCAACGAAAGTACCGAGTGTCGTGGATCTTCA 532
||||||| |||| ||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 478 CCTGTTTCTGGCACTCACCATATACACAGCAACGAAAGTACCGAGCGTCGTGGATCTTCA 537
Query 533 TTCGCTTCAACACCGTTTACCCGATTTGTTGAGGAAAACAGATCTCCACAAACTTCATTC 592
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 538 TTCTCTTCAACACCGTTTACCTGATTTGTTGAGGAAAACAGATCTCCACAAACTTCACGC 597
Query 593 TGAGCTCATGGCTCGCCTTCCTTCTAGTCCATCTAGTTGGCATGTGATGGACCTTCTTTA 652
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 598 TGATCTCATGTCTCGCCTTCCTTCTAGTCCATCTAGTTGGCATGTAATGGACCTTCTTTA 657
Query 653 TAACTGTTTGCCTGAAAGATTTTCTCATGGCAACTACACTGACATGTGTGTTCTGCATTC 712
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 658 TAACTGTTTGCCTGAAAGATTTTCTCATGGCAACTACACCGACATGTGTGTTCTGCATTC 717
Query 713 TGTGAGGGAAGATCTTGCAAACTTGATAGCTCCTTTGATCTTCAGGCCAATTACTCGATG 772
||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||
Sbjct 718 GGTGAGGGAAGATCTTGCAAACATGATAGCTCCTTTGATCTTCCGGCCAATTACCCGATG 777
Query 773 GCCGTTTTATGCATTTCTAGGTGGTGCTATGTTCTGTCTATTAGCAAGCAGCACGTGCCA 832
|||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 778 GCCGTTCTATGCATTTCTAGGCGGTGCAATGTTCTGTCTATTAGCAAGCAGCACATGCCA 837
Query 833 CCTCCTCTCATGTCACTCCGAGCGAGTCTCCTACATAATGCTTAGGCTTGATTACGCCGG 892
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 838 CCTCCTCTCATGTCACTCCGAGCGAGTCTCCTACATAATGCTTAGGCTTGATTATGCTGG 897
Query 893 CATCGCAGCTCTAATAGCGACTTCCTTCTACCCTCCGGTTTATTACTCCTTCATGTGTGA 952
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 898 AATCGCAGCTCTAATAGCTACTTCTTTCTACCCTCCGGTCTATTACTCCTTCATGTGTGA 957
Query 953 TCCTTTCTTCTGCAACCTCTACTTAGGATTCATAACCATCTTAGGAATCGCCACTGTGCT 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 TCCTTTCTTCTGCAACCTCTACTTAGGATTCATAACCATCTTAGGAATCGCCACAGTGCT 1017
Query 1013 TGTTTCTCTCCTCCCGGTTTTCCAAAGCCCGGAGTTTCGGGTGGTGAGGGCGTCTCTGTT 1072
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1018 TGTCTCTCTCCTCCCGGTTTTCCAAAGCCCAGAGTTTCGGGTCGTGAGGGCGTCTCTGTT 1077
Query 1073 CTTTGGAATGGGATTCTCTGGCTTAGCTCCGATTCTTCACAAGCTGATAATCTTTTGGGA 1132
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1078 TTTTGGAATGGGATTCTCTGGCTTAGCTCCGATTCTTCACAAGCTGATCATCTTTTGGGA 1137
Query 1133 CCAACCTGAAGCCCTTCACACGACAGGTTATGAGATTTTGATGGGTTTGCTTTATGGGTT 1192
|||||||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 1138 CCAACCTGAAGCGCTTCACACGACAGGATATGAAATTTTGATGGGTTTGCTCTACGGGTT 1197
Query 1193 AGGAGCTCTGGTTTATGCAACTAGGATCCCAGAGAGATGGATGCCGGGTAAATTCGATAT 1252
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1198 AGGAGCTTTGGTTTATGCAACTAGGATCCCAGAGAGATGGATGCCGGGGAAATTCGATAT 1257
Query 1253 AGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTTGTTGCTGGTGCGTTCACGCACTA 1312
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1258 AGCTGGACATAGCCATCAGTTGTTTCATGTTCTGGTGGTTGCTGGTGCGTTCACACACTA 1317
Query 1313 TAGAGCTGGGCTAGTGTATCTTAAGTGGAGAGATATTGAAGGATGTTGAAGATGAAGATT 1372
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1318 TAGAGCTGGGCTAGTGTATCTTAAGTGGAGAGATATTGAAGGATGTTGA---TGAAGATT 1374
Query 1373 GAAGATTAGATGGAATCTTTGA------A--TCTTGTTTGTAGTAGCTTCATATAAAAGT 1424
|||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1375 GAAGATTAGATGGAATCTTTGATGTTTTAAATCTTGTTTGTAGTAGCTTCATATAAAAGT 1434
Query 1425 TGGATTATGTAAAGTCTTATATGTAATCAAACGTTTAATTGTTTCCTTTATTCAACAAAG 1484
|||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||
Sbjct 1435 TGGATTATGTAAAGTCTTATGTGTAATCAAT-GTTGAATTGTTTCCTATATTCAACAAAG 1493
Query 1485 GATTTATATTGTTAATCCACATATGTATTACTGGTTAAAGAAGCTGAAGGATTCATATTT 1544
|||| |||||||||||| |||||| | | ||||| ||||||||||||||||||||||
Sbjct 1494 GATTCATATTGTTAATCTACATAT-TGGT---GGTTACAGAAGCTGAAGGATTCATATTT 1549
Query 1545 TT 1546
||
Sbjct 1550 TT 1551
> Ahg352947 jgi|Araly1|352947|fgenesh1_pg.C_scaffold_7000120
Length=3174
Score = 414 bits (224), Expect = 8e-115
Identities = 287/317 (91%), Gaps = 6/317 (2%)
Strand=Plus/Plus
Query 1049 TCGGGTGGTGAGGGCGTCT-CTGTTCTTTGGAATGGGATTCTCTGGCTTAGCTCCGATTC 1107
|||||| |||||||| | | ||||| ||||||||||||||||||| ||||| |||||
Sbjct 2860 TCGGGTTGTGAGGGCCT-TACTGTT-TTTGGAATGGGATTCTCTGAAGGAGCTCTGATTC 2917
Query 1108 TTCACAAGCTGATAATCTTTTGGGACCAACCTGAAGCCCTTCACACGACAGGTTATGAGA 1167
| || |||||||| || |||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 2918 TACATAAGCTGATCATGTTTTGGGATCAACCTGAAGCGCTTCACACAACAGGTTATGAGA 2977
Query 1168 TTTTGATGGGTTTGCTTTATGGGTTAGGAGCTCTGGTTTATGCAACTAGGATCCCAGAGA 1227
||||||||| |||||| || |||||||||||| ||||||||||||||||||| |||||||
Sbjct 2978 TTTTGATGGATTTGCTCTACGGGTTAGGAGCTTTGGTTTATGCAACTAGGATTCCAGAGA 3037
Query 1228 GATGGATGCCGGGTAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGG 1287
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3038 GATGGATGCTGGGAAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGG 3097
Query 1288 TTGTTGCTGGTGCGTTCACG-CAC--TATAGAGCTGGGCTAGTGTATCTTAAGTGGAGAG 1344
| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 3098 TGGTTGCTGGTGCGTTCACCACACACTATAGAGCTGGGCTAGTGTATCTTAAGTGGAGAG 3157
Query 1345 ATATTGAAGGATGTTGA 1361
| |||||||||||||||
Sbjct 3158 ACATTGAAGGATGTTGA 3174
> Ahg944078 jgi|Araly1|944078|scaffold_700307.1
Length=1120
Score = 176 bits (95), Expect = 4e-43
Identities = 117/127 (92%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 1232 GATGCC-GGGTAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTTG 1290
||| || ||| |||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 995 GATCCCTGGG-AAATTCGATATAGCTGGACATAGCCATCAGTTGTTTCATGTTCTGATGG 1053
Query 1291 TTGCTGGTGCGTTCACGCACTATAGAGCTGGGCTA-GTGTATCTTAAGTGGAGAGATATT 1349
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1054 TTGTTGGTGCGTTCACGCACTATAGAGCTGGGCTTTGTGTATCTTAAGTGGAGAGATATT 1113
Query 1350 GAAGGAT 1356
||| |||
Sbjct 1114 GAAAGAT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57897172400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5