BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37760.1
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490840 jgi|Araly1|490840|fgenesh2_kg.7__273__AT4G37760.1 2423 0.0
Ahg899581 jgi|Araly1|899581|Al_scaffold_0004_231 1044 0.0
> Ahg490840 jgi|Araly1|490840|fgenesh2_kg.7__273__AT4G37760.1
Length=1775
Score = 2423 bits (1312), Expect = 0.0
Identities = 1487/1574 (94%), Gaps = 2/1574 (0%)
Strand=Plus/Plus
Query 183 CTCTCTGTGTACGCTAATGGCTCCGACGATAT-TCGTTGATCACTGTATCCTCACAACAA 241
||||||||||||| |||||||||||| ||| | |||||||||||| ||||||||||||||
Sbjct 85 CTCTCTGTGTACGTTAATGGCTCCGAGGAT-TGTCGTTGATCACTTTATCCTCACAACAA 143
Query 242 CGTTTGTCGCATCCTTGTTCGCGTTTCTGCTTCTATACGTCCTGCGTCGCCGGAGCAAGA 301
||||| |||| ||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 144 CGTTTTTCGCCTCCTTGTTCGCGTTTCTGCTTCTATACATCTTGCGTCGTCGGAGCAAGA 203
Query 302 CGATTCATGGGTCTGTCAATGTCCGTAACGGAACCCTAACGGTGAAATCTGGAACAGACG 361
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 204 AGATTCGTGGGTCTGTCAATGTCCGTAACGGAACCCTAACGGTGAAATCCGGAACAGGTG 263
Query 362 TTGATATTATCATTGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTCGGCA 421
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 264 TCGATATCATCATCGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTAGGAA 323
Query 422 AGGAAGGAAGAAGAGTTCACGTTATAGAAAGAGACTTAACGGAGCCTGATCGAATTGTCG 481
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 324 AGGAAGGGAGAAGAGTTCACGTTATAGAAAGAGACTTAACTGAGCCTGACCGAATCGTCG 383
Query 482 GTGAATTACTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTG 541
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 GTGAATTGCTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTG 443
Query 542 TGAAGGATATAGATGCGCAGAGAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACA 601
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TGAAGGAGATAGATGCGCAGAGAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACA 503
Query 602 CTAAACTCTCTTACCCGTTGGATCAGTTTGATTCCGATGTTGCGGGTCGTAGCTTTCACA 661
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CTAAACTGTCTTACCCGTTGGATCAGTTTGATTCCGATGTTGCGGGTCGTAGCTTTCACA 563
Query 662 ATGGGAGATTTGTGCAGAGGATGCGAGAGAAAGCTTCTTTACTTCCCAATGTTCGAATGG 721
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 564 ATGGGAGATTTGTGCAGCGGATGCGAGAGAAAGCTTCTTCACTTCCCAATGTTCGAATGG 623
Query 722 AGCAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAATACA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 AGCAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAATACA 683
Query 782 AAACCAAAGATGGCCAAGAGCTTAAGTCATTTGCTCCTCTCACTATTGTATGTGATGGTT 841
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 684 AAACCAAAGATGGCCAAGAACTTAAATCATTTGCTCCTCTCACTATTGTATGTGATGGTT 743
Query 842 GTTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAGGTGCCATCCAATTTCG 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GTTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAGGTGCCATCCAATTTCG 803
Query 902 TTGGTCTGGTATTGGAGAATTGCGAACTCCCGTTTCCGAACCACGGGCACGTTGTTCTTG 961
| |||||||| |||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 804 TGGGTCTGGTGTTGGAGAATTGCGAACTCCCATTTCCGAACCACGGACATGTTGTTCTCG 863
Query 962 GCGATCCGTCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTTGCTTGGTAG 1021
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 864 GCGACCCATCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTTGCTTGGTTG 923
Query 1022 ATGTACCAGGTTCAAAACTTCCTTCAGTTGCAAGTGGTGAAATGGCTCACCATCTCAAAA 1081
|||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 924 ATGTTCCAGGTTCAAAACTTCCTTCAGTCGCAAGCGGCGAAATGGCTCACCATCTCAAAA 983
Query 1082 CAATGGTTGCACCGCAGGTACCACCTCAGATCCGTGATGCTTTCATTTCTGCAGTCGAAA 1141
||| || ||||| |||||||| ||||| ||||| ||| | ||||||||||| |||||||
Sbjct 984 CAACAGTCGCACCCCAGGTACCGCCTCAAATCCGCGATTCGTTCATTTCTGCGGTCGAAA 1043
Query 1142 AAGGTAACATAAGAACAATGCCGAACAGAAGCATGCCAGCTGATCCAATTCATACACCTG 1201
|||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||| |
Sbjct 1044 AAGGTAACATAAGAACAATGCCTAACCGAAGCATGCCAGCCGACCCAATTCATACACCCG 1103
Query 1202 GAGCTTTGCTTTTAGGTGATGCGTTCAACATGCGCCATCCTCTTACTGGAGGTGGTATGA 1261
||||| |||||||||| || || ||||||||||||||||||||||| ||||| |||||||
Sbjct 1104 GAGCTCTGCTTTTAGGCGACGCATTCAACATGCGCCATCCTCTTACCGGAGGCGGTATGA 1163
Query 1262 CCGTTGCATTGTCTGATATAGTCATCCTCCGTGATCTATTGAACCCGCTCGTCGACTTAA 1321
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1164 CCGTCGCATTGTCTGATATAGTCATCCTCCGCGATCTATTAAACCCGCTCGTCGACTTAA 1223
Query 1322 CCAACAAAGAGTCCTTATCCAAATACATAGAATCATTCTACACATTGCGGAAACCGGTTG 1381
|||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 1224 CCAACAAAGAGTCCTTATCCAAATACATCGAATCGTTCTACACGTTGCGAAAACCGGTTG 1283
Query 1382 CTTCGACTATCAATACACTCGCAGGCGCTCTTTACAAAGTCTTTTTAGCATCTCCAGACG 1441
|||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1284 CTTCGACTATCAATACGCTCGCAGGAGCTCTTTACAAAGTCTTTTTGGCTTCTCCAGACG 1343
Query 1442 ATGCAAGAAGCGAAATGCGTCGAGCTTGCTTCGATTATCTTAGCCTCGGAGGGGTTTGCT 1501
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 ATGCGAGAAGCGAAATGCGTCGAGCTTGCTTCGATTATCTTAGCCTCGGAGGGGTTTGCT 1403
Query 1502 CATCAGGACCTGTGGCTTTGCTATCTGGTTTGAACCCACGACCTATGAGCCTTGTTCTTC 1561
| |||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1404 CCTCAGGACCAGTGGCTTTGCTCTCAGGTTTGAACCCGCGACCTATGAGCCTTGTTCTTC 1463
Query 1562 ATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGTTTGCTTGTACCTCTCCCGTCCGTTA 1621
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1464 ATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGTTTGCTTGTACCTCTCCCTTCCGTCA 1523
Query 1622 AACGGTTATGGCTTGGAGCTAGACTAATCTCGAGTGCTTCAGGGATCATATTTCCAATAA 1681
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1524 AACGGTTATGGCTCGGAGCGAGACTAATCTCGAGTGCTTCAGGGATAATATTTCCAATAA 1583
Query 1682 TAAAAGCAGAAGGTGTGAGGCAAATGTTCTTCCCTCGAACTATTCCTGCCATTTACAGAG 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 TAAAAGCAGAAGGTGTGAGGCAAATGTTCTTCCCTCGAACTATTCCTGCCATTTACAGAG 1643
Query 1742 CTCCTCCTACTCCT 1755
||||||||||||||
Sbjct 1644 CTCCTCCTACTCCT 1657
Score = 134 bits (72), Expect = 3e-30
Identities = 79/82 (96%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 1856 GTGGTTTGATTTGGTTTTTACGAACTTTGGTTTGAAATTTGTACTCAGTCCATTACAGAC 1915
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1695 GTGGTTTGATTTGGTCTTTACGAACTTTGGTTTGAAATTTGTACTCA-TCCATTACAAAC 1753
Query 1916 AAAATCATCAAGTAAATAAGTA 1937
||||||||||||||||||||||
Sbjct 1754 AAAATCATCAAGTAAATAAGTA 1775
> Ahg899581 jgi|Araly1|899581|Al_scaffold_0004_231
Length=1686
Score = 1044 bits (565), Expect = 0.0
Identities = 1148/1423 (81%), Gaps = 66/1423 (5%)
Strand=Plus/Plus
Query 364 GATATTATCATTGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTCGGCAAG 423
||| ||||||| ||||| |||||||| |||| || || ||||||||||| |||||||||
Sbjct 292 GATGTTATCATCGTCGGAGCTGGTGTTTCCGGTGCCGCTCTTGCTCATACTCTCGGCAAG 351
Query 424 GAAGGAAGAAGAGTTCACGTTATAGAAAGAGACTTAACGGAGCCTGATC-GAATTGTCGG 482
|||||| |||||||||| |||||||||||||| || | |||| || | ||||||| ||
Sbjct 352 GAAGGACGAAGAGTTCATGTTATAGAAAGAGATTTGTCTGAGCAAGA-CAGAATTGTTGG 410
Query 483 TGAATTACTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTGT 542
|||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 411 TGAATTGCTTCAACCTGGTGGTTACTTGAAGTTAATCGAACTTGGACTTGAGGATTGTGT 470
Query 543 GAAGGATATAGATGCGCAGA-GAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACA 601
|||| | |||||||| || | ||||||||||||||| ||||||||||||||||||||| |
Sbjct 471 GAAGAAGATAGATGCTCA-ACGAGTTCTTGGTTATGTTCTCTTTAAAGATGGGAAACATA 529
Query 602 CTAAACTCTCTTACCCGTTGG-ATCAGTTTGATTCCGATGTTG-CGGGTCGTAGCTTT-C 658
||||||| |||||||| |||| | | ||||||||| ||||| | |||| | || ||| |
Sbjct 530 CTAAACTTTCTTACCCTTTGGAAAC-GTTTGATTCGGATGTAGCCGGG-AGAAG-TTTCC 586
Query 659 ACAATGGGAGATTTGTGCAGAGGATGCGAGAGAAAGCTTCT-TTACTTCCCAATGTTCGA 717
|||||||||||||||||||||| |||||||| ||||| || | ||| | ||||| |||
Sbjct 587 ACAATGGGAGATTTGTGCAGAGAATGCGAGAAAAAGCCGCTACT-CTTTCAAATGTACGA 645
Query 718 ATGGAGCAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAA 777
|||| |||||||| || || |||||| | ||||||||||| | ||||||||| |||| |
Sbjct 646 TTGGAACAAGGAACGGTTACGTCGTTGCTTGAAGAAAACGGGACAATCAAAGGGGTTCGA 705
Query 778 TACAAAACCAAA-GATGGCCAA-GAGCTTAAG-TCATTTGCTCCTCTCACTATTGTATGT 834
|||| | |||| || || ||| |||||| || ||||||||||||||||| |||||||||
Sbjct 706 TACAGGA-CAAAGGA-GGGCAATGAGCTT-AGATCATTTGCTCCTCTCACAATTGTATGT 762
Query 835 GATGGTTGTTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAG-GTGCCATC 893
|||||||||||||||||||||||||| ||||| || |||||||||||||| | ||||||
Sbjct 763 GATGGTTGTTTCTCCAACTTGCGTCGCTCTCTTTGTAAACCTAAGGTGGATAG-GCCATC 821
Query 894 CAATTTCGTTGGTCTGGTATTGGAGAATTGCGAACTCCCGTTTCCGAACCACGGGCACGT 953
| ||| || ||||| || |||||||| || ||||| || ||| | || |||||||| ||
Sbjct 822 TACTTTTGTGGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAAATCACGGGCATGT 881
Query 954 TGTTCTTGGC-GATCCGTCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTT 1012
|||||| | | || || || ||||| ||| | ||||| |||||||| || ||||||||||
Sbjct 882 TGTTCTCG-CTGACCCATCTCCCATCTTAATGTATCCCATCAGCAGTTCTGAAGTCCGTT 940
Query 1013 GCTTGGTAGATGTACCAGGTTCAAAAC-TTCCTTC-AGTTGCAAGTGGTGAAATGGCTCA 1070
|||| || |||||||| ||| ||||| ||||| | | ||| || ||| |||||||| |
Sbjct 941 GCTTAGTCGATGTACCGGGT-CAAAAAGTTCCTCCCA-TTGGAAATGGCGAAATGGCAAA 998
Query 1071 CCATCTCAAAACAATGGTTGCACCGCAGGTACCA-CCTCAGATCCGTGATGCTTTCATTT 1129
|||| |||||| |||||| || || |||||| || || ||||||| || |||||
Sbjct 999 GTATCTGAAAACACGGGTTGCGCCTCAAGTACCAACCG-AGGTCCGTGAAGCATTCATCA 1057
Query 1130 CTGCAGTCGAAAAAGGTAACAT-AAGAACAATGCCGAACAGAAGCATGCCAGCTGATCCA 1188
| || || || |||||||| || || ||| ||||| ||| |||||||||||||||||||
Sbjct 1058 CCGCGGTTGAGAAAGGTAATATCAA-AACCATGCCAAACCGAAGCATGCCAGCTGATCCG 1116
Query 1189 ATTCATACACCTGGAGCT-TTGCTTTTAGGTGATGCGTTCAACATGCGCCATCCTCTTA- 1246
|||| ||| ||||||||| || ||| |||||||||| ||||||||| | |||||| |||
Sbjct 1117 ATTCCTACTCCTGGAGCTCTT-CTTCTAGGTGATGCATTCAACATGAGACATCCT-TTAA 1174
Query 1247 CTGGAGGTGGTATGACCGTTGCATTGTCTGATATAGTCATCCTCCGTGATCTAT-TGAAC 1305
|||| ||||| ||||||||||||||| | ||||| || | ||||||||||| | | |||
Sbjct 1175 CTGGTGGTGGGATGACCGTTGCATTGGCGGATATCGTTGTACTCCGTGATCT-TCT-AAC 1232
Query 1306 -CCGCT-CGTCGAC-TTAACCAACAAAGA-GTCCTTATCCAAATACATAGAATCATTCTA 1361
|| | || | || |||| | |||||| | | || || || || || ||||| || ||
Sbjct 1233 GCCAATTCG-CAACCTTAATGA-CAAAGAAG-CTTTGTCTAAGTATATTGAATCTTTTTA 1289
Query 1362 CACATTGCGGAAACCGGTTGCTTCGACTATCAATACACTCGCAGG-CGCTCTT-TACAAA 1419
|||| |||| ||||| || ||||| || || ||||| || || || ||| || || |
Sbjct 1290 CACACTGCGAAAACCTGTAGCTTCCACCATTAATACGCTGGC-GGACGCG-TTGTATATG 1347
Query 1420 GTCTTTTTAGCATCTCCAGACGATGCAAGAAGCG-AAATGCGTCGA-GCTTGCTTCGATT 1477
||||||||||||||| | || || ||||||| || |||||||| || ||||||||| | |
Sbjct 1348 GTCTTTTTAGCATCTTCGGATGAAGCAAGAA-CGGAAATGCGT-GAAGCTTGCTTCAACT 1405
Query 1478 ATCTTAGCCTCGGAGGGGTTTGCTCATCAGGACCTGTGGCTTTGCTATCTGGTTTGAACC 1537
|||||||||| ||||| ||||||||||| || || || || |||||||||||||| ||||
Sbjct 1406 ATCTTAGCCTTGGAGGTGTTTGCTCATCTGGTCCAGTTGCATTGCTATCTGGTTTAAACC 1465
Query 1538 CACGACCTATGAGCCTT-GTTCTTCATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGT 1596
| || ||| |||| || ||||| || ||||| || || ||||| | || ||| |||||
Sbjct 1466 CTCGTCCTCTGAGT-TTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGT 1524
Query 1597 TTGCTTG-TACC-TCTCCCGTCCG-TTAAACGGTTATGGCTTGGAGCTAG-ACTAATCTC 1652
|| | | |||| | ||| || | ||||| | || |||||||||||||| | |||||||
Sbjct 1525 TTAAT-GCTACCATTTCCT-TC-GATTAAAAGCTTTTGGCTTGGAGCTAGGA-TAATCTC 1580
Query 1653 GAGTGCTTCAGGGATCATATTTCCAATAATAAAAGCAGAAGGTGTGAGGCAAATGTTCTT 1712
||||||| || | ||||| ||||| ||||| ||||| || || || ||||||||||||||
Sbjct 1581 GAGTGCTACAAGCATCATCTTTCCCATAATCAAAGCTGAGGGAGTTAGGCAAATGTTCTT 1640
Query 1713 CCCTCGAACTATTC-CTGCCATTTACAG-AGCTCCTCCTACTC 1753
||| || ||||| | ||||||| ||| | | |||||||| |||
Sbjct 1641 CCCGCGTACTAT-CGCTGCCATATACCGTA-CTCCTCCTTCTC 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76256670490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5