BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37870.1
Length=2413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490829 jgi|Araly1|490829|fgenesh2_kg.7__262__AT4G37870.1 3578 0.0
Ahg496802 jgi|Araly1|496802|fgenesh2_kg.8__2618__AT5G65690.1 1064 0.0
> Ahg490829 jgi|Araly1|490829|fgenesh2_kg.7__262__AT4G37870.1
Length=2359
Score = 3578 bits (1937), Expect = 0.0
Identities = 2128/2219 (96%), Gaps = 18/2219 (1%)
Strand=Plus/Plus
Query 1 TTCGCATCATTTTGTATCATCCCTTGAAAACGTTAAATGATCTTCTCCTCCGATCATTAG 60
||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||
Sbjct 1 TTCGCATCATTTTGTATCATCCC-TGAAAACCTTAAATGATCATCTCCTTCGATCATTAA 59
Query 61 TCTCTTTAATCTTTCTCAGCCTCTTCTTGTTCGTGATCTCTCTTCCTCCG-GAAAAAGAT 119
|||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||
Sbjct 60 TCTCTTTAATCTTTCTCA--ATCTTCTTGTTCTTGATCTCTCTTCCTCCGTG-AAAAGAT 116
Query 120 GTCGGCCGGTAACGGAAATGCTACTAACGGTGACGGAGGGTTTAGTTTCCCTAAAGGACC 179
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 117 GTCGGCCGGTGACGGAAATGCTACTAACGGTGACGGAGGATTTAGTTTCCCTAAAGGACC 176
Query 180 GGTGATGCCGAAGATAACGACCGGAGCAGCAAAGAGAGGTAGCGGAGTCTGCCACGACGA 239
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 177 GGTGATGCCGAAGATAACGACCGGAGCAGCAAAGAGAGGTAACGGAATCTGCCACGACGA 236
Query 240 TAGTGGTCCGACGGTGAATGCCACAACCATCGATGAGCTTCATTCGTTACAGAAGAAACG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TAGTGGTCCGACGGTGAATGCCACAACCATCGATGAGCTTCATTCGTTACAGAAGAAACG 296
Query 300 TTCTGCTCCTACCACACCGATCAACCAAAACGCCGCCGCTGCTTTTGCCGCCGTCTCCGA 359
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 297 TTCTGCTCCTACCACACCGATCAACCAAGGCGCCGCCGCTGCTTTCGCCGCCGTCTCCGA 356
Query 360 GGAGGAGCGTCAGAAGATTCAGCTTCAATCTATCAGTGCATCGTTAGCATCGTTAACGAG 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 GGAGGAGCGTCAGAAGATTCAGCTTCAATCTATCAGTGCATCGTTAGCTTCGTTAACGAG 416
Query 420 AGAGTCAGGACCAAAGGTGGTGAGAGGAGATCCGGCGGAGAAGAAGACCGATGGTTCAAC 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGACTCAGGACCAAAGGTGGTGAGAGGAGATCCGGCGGAGAAGAAGACCGATGGTTCAAC 476
Query 480 TACTCCGGCGTACGCTCACGGCCAACATCATTCTATCTTTTCTCCGGCTACTGGTGCTGT 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 477 TACTCCGGCGTACGCACACGGCCAACATCATTCTATCTTTTCTCCGGCTACTGGTGCCGT 536
Query 540 CAGTGATAGCTCCTTGAAGTTTACTCACGTCCTCTACAATCTTTCGCCTGCAGAGCTTTA 599
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 537 CAGTGATAGCTCCTTGAAGTTTACACACGTCCTCTACAATCTTTCCCCTGCAGAGCTTTA 596
Query 600 TGAGCAAGCTATTAAGTATGAGAAAGGTTCGTTTATCACTTCTAATGGAGCTTTGGCGAC 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CGAGCAAGCTATTAAGTATGAGAAAGGTTCGTTTATCACTTCTAATGGAGCTTTGGCGAC 656
Query 660 GCTTTCTGGTGCTAAGACTGGTCGTGCTCCCAGAGATAAGCGTGTTGTTAGAGATGCTAC 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 657 GCTTTCTGGTGCTAAGACTGGTCGTGCTCCGAGAGATAAGCGTGTTGTTAGAGATGCGAC 716
Query 720 TACTGAGGATGAGCTTTGGTGGGGAAAGGGTTCGCCGAATATCGAAATGGATGAACATAC 779
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 717 TACTGAGGATGAGCTTTGGTGGGGGAAGGGTTCACCGAATATCGAAATGGATGAACATAC 776
Query 780 TTTCATGGTGAACAGAGAAAGAGCTGTTGATTACTTGAATTCCTTGGAAAAGGTCTTTGT 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 TTTCATGGTGAACAGAGAAAGAGCTGTTGATTACTTGAATTCCTTGGATAAGGTCTTTGT 836
Query 840 CAATGACCAATACTTAAACTGGGATCCAGAGAACAGAATCAAAGTCAGGATTGTCTCAGC 899
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 837 CAATGATCAATACTTAAACTGGGATCCAGAGAACAGAATCAAAGTCAGGATTGTTTCAGC 896
Query 900 TAGAGCTTACCATTCATTGTTTATGCACAACATGTGTATCCGACCAACTCAGGAGGAGCT 959
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TAGAGCTTACCATTCACTGTTTATGCACAACATGTGTATCCGACCAACTCAGGAGGAGCT 956
Query 960 TGAGAGCTTTGGTACTCCGGATTTTACTATATACAATGCTGGGCAGTTTCCATGTAATCG 1019
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 957 TGAGAGCTTTGGTACTCCGGATTTCACTATATACAATGCTGGACAGTTTCCGTGTAACCG 1016
Query 1020 TTACACTCATTACATGACTTCGTCCACTAGCGTAGACCTTAATCTGGCTAGGAGGGAAAT 1079
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1017 TTACACTCATTACATGACGTCGTCCACTAGCGTAGATCTTAATCTGGCTAGAAGGGAAAT 1076
Query 1080 GGTTATACTTGGTACTCAGTATGCTGGGGAAATGAAGAAGGGTCTTTTCAGTGTGATGCA 1139
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1077 GGTTATACTTGGTACTCAGTATGCGGGGGAAATGAAGAAAGGTCTTTTCAGTGTGATGCA 1136
Query 1140 TTACCTTATGCCTAAGCGTCGTATTCTCTCCCTTCATTCTGGATGCAATATGGGAAAAGA 1199
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1137 TTACCTTATGCCTAAGCGCCGGATTCTCTCCCTTCATTCTGGATGCAATATGGGGAAAGA 1196
Query 1200 TGGAGATGTTGCTCTCTTCTTTGGACTTTCAGGTAC------CGGGAAGACAACGCTGTC 1253
||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1197 TGGAGATGTTGCTCTCTTCTTTGGACTTTCAGGTATTGTAGTCGGGAAGACAACACTGTC 1256
Query 1254 TACTGATCACAACAGGTATCTTATTGGAGATGATGAGCATTGTTGGACTGAGACTGGTGT 1313
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TACTGATCACAATAGGTATCTTATTGGAGATGATGAGCATTGTTGGACTGAGACTGGTGT 1316
Query 1314 TTCGAACATTGAGGGTGGGTGCTATGCTAAGTGTGTTGATCTTTCGAGGGAGAAGGAGCC 1373
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1317 TTCGAACATTGAGGGTGGATGCTATGCTAAGTGCGTTGATCTTTCGAGGGAGAAGGAGCC 1376
Query 1374 TGATATCTGGAACGCTATCAAGTTTGGAACAGTTTTGGAAAATGTTGTGTTTGATGAGCA 1433
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TGATATCTGGAACGCCATCAAGTTTGGAACAGTTTTGGAAAATGTTGTGTTTGATGAGCA 1436
Query 1434 CACCAGAGAAGTGGATTACTCTGATAAATCTGTTACAGAGAACACACGTGCTGCCTACCC 1493
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1437 CACCAGAGAAGTGGATTACTCTGATAAATCCGTTACAGAGAACACACGTGCTGCGTACCC 1496
Query 1494 AATTGAGTTCATTCCAAATGCGAAAATACCTTGTGTTGGTCCACACCCGACAAATGTGAT 1553
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1497 GATTGAGTTCATTCCAAATGCGAAAATACCGTGTGTTGGTCCACACCCGAAAAATGTGAT 1556
Query 1554 ACTTCTGGCTTGTGATGCCTTTGGTGTTCTCCCACCTGTGAGCAAGCTGAATCTGGCACA 1613
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 ACTTCTGGCTTGTGATGCGTTTGGTGTTCTCCCACCTGTGAGCAAGCTGAATCTGGCACA 1616
Query 1614 AACCATGTACCACTTCATCAGTGGTTACACTGCTCTGGTTGCTGGCACAGAGGATGGTAT 1673
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1617 AACCATGTACCACTTCATAAGTGGTTACACTGCTCTGGTCGCTGGCACAGAGGATGGCAT 1676
Query 1674 CAAGGAGCCAACAGCAACATTCTCAGCTTGCTTTGGTGCAGCTTTCATAATGTTGCATCC 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CAAGGAGCCAACAGCAACATTCTCAGCTTGCTTTGGTGCAGCTTTCATAATGTTGCATCC 1736
Query 1734 CACAAAGTATGCAGCTATGTTAGCTGAGAAGATGAAGTCACAAGGTGCTACTGGTTGGCT 1793
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1737 CACAAAGTATGCAGCTATGTTAGCTGAGAAGATGAAGACACAAGGTGCTACTGGTTGGCT 1796
Query 1794 CGTCAACACTGGTTGGTCTGGTGGCAGTTATGGTGTTGGAAACAGAATCAAGCTGGCATA 1853
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 CGTGAACACTGGTTGGTCCGGTGGCAGTTATGGTGTTGGAAACAGAATCAAGCTGGCATA 1856
Query 1854 CACTAGAAAGATCATCGATGCAATCCATTCGGGCAGTCTCTTGAAGGCAAACTACAAGAA 1913
||||||||||||||||||||| |||||||| |||||||| |||||||| | |||||||||
Sbjct 1857 CACTAGAAAGATCATCGATGCGATCCATTCAGGCAGTCTGTTGAAGGCGACCTACAAGAA 1916
Query 1914 AACCGAAATCTTTGGATTTGAAATCCCAACTGAGATCGAAGGGATACCTTCAGAGATCTT 1973
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1917 AACCGAAATCTTTGGATTTGAAATCCCAACTGAGATTGAAGGGATACCTTCAGAGATCTT 1976
Query 1974 GGACCCCGTCAACTCCTGGTCTGATAAGAAGGCACACAAAGATACTCTGGTGAAACTGGG 2033
||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1977 GGACCCCATCAACTCCTGGTCTGATAAGAAGGCACACAAGGAAACTCTGGTGAAACTGGG 2036
Query 2034 AGGTCTGTTCAAGAAGAACTTCGAGGTTTTTGCTAACCATAAGATTGGTGTGGATGGTAA 2093
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2037 AGGTCTGTTCAAGAAGAATTTCGAGGTTTTTGCTAACCATAAGATTGGTGTGGATGGAAA 2096
Query 2094 GCTTACGGAGGAGATTCTCGCTGCTGGTCCTATCTTTTAGAAAAACCAAACTCTGA---A 2150
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 2097 GCTTACGGAGGAGATTCTCGCTGCTGGTCCTATCTTTTAGAAAACCCAAACAATGATGGA 2156
Query 2151 TGATGTTGTCGAAAAGAAAGAAAGATCTACTATT-ATTAAGAAGAATAAAATGAGACTT 2208
||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||
Sbjct 2157 TGATGTTGTCGAAAAGAAA-A--GATCTATTATTTATTAAGAAGAATAAAATGAGACTT 2212
Score = 126 bits (68), Expect = 7e-28
Identities = 84/92 (91%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 2322 GTCATATATTTTTGTTGGGCCTTTGCCAACATTTACATGATAGAACCAAGTACGAATAAT 2381
||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 2268 GTCATTTATTTTTGTTGGGCTTTTGCCAGCATTTACATGATAGAACCAAGTACGAATAAT 2327
Query 2382 ATAAATTCTGGTCCAATCTGATGATGATTTTC 2413
|| ||||| |||||||| | |||||| |||||
Sbjct 2328 ATGAATTCCGGTCCAATTTAATGATGGTTTTC 2359
> Ahg496802 jgi|Araly1|496802|fgenesh2_kg.8__2618__AT5G65690.1
Length=2111
Score = 1064 bits (576), Expect = 0.0
Identities = 1284/1618 (79%), Gaps = 80/1618 (5%)
Strand=Plus/Plus
Query 552 CTTGAAGTTTACTCACGTCC-TCTACAATCTTTCGCCTGCAGAGCTT-TATGAGCAAGCT 609
||||||||| |||||| ||| || |||| || || || || ||| || || ||||| ||
Sbjct 432 CTTGAAGTTCACTCACATCCTTC-ACAACCTCTCTCCAGCCGAG-TTGTACGAGCAGGCG 489
Query 610 ATTAAGTATGAGAAAGGTTCGTTTATCACTTCTAATGGAGCTTTGGCGACGCTT-TCTGG 668
||||||||||||||||| |||||| | || || | || || ||||| || || || ||
Sbjct 490 ATTAAGTATGAGAAAGGATCGTTTGTGACATCGACCGGTGCGTTGGCTAC-ATTGTCCGG 548
Query 669 TGCTAAGACTGGTC-GTGCTCCCAGAGATAAGCGTGTTGTT-AGAGATGCTACTACTGAG 726
|| || || |||| || |||| | ||| |||||||| ||| || |||| || ||||||
Sbjct 549 AGCCAAAACCGGTCGGT-CTCCTAAAGACAAGCGTGTGGTTAAG-GATGAGACCACTGAG 606
Query 727 GATGAGCTTTGGT-GGGGAAAGGGTTCGCCGAATATCGAAATGGATGAACATACTTTCAT 785
| || || |||| ||||||| || || || || || ||||||||||| || ||||| |
Sbjct 607 GCCGAACTCTGGTGGGGGAAA-GGATCACCAAACATTGAAATGGATGAGCAAACTTTTTT 665
Query 786 GGTGAACAGAGAAAGAGCTGTTGATTACTTGAATTCCTTGGAAAAGGTCTTTGTCAATGA 845
||||||| |||| ||||||||||||||||| || |||||||| ||||| ||||| |||||
Sbjct 666 GGTGAACCGAGAGAGAGCTGTTGATTACTTAAACTCCTTGGACAAGGTGTTTGTGAATGA 725
Query 846 CCAATACTTAAACTGGGATCCAGAGAACAGAATCAAAGTCAGGATTGTCTCAGCTAGAGC 905
|||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 726 TCAATACCTAAACTGGGATCCAGAGAACAGAATCAAAGTGAGAATTGTTTCAGCTAGAGC 785
Query 906 TTACCATTCATTGTTTATGCACAACATGTGTATCCGACCAACTCAGGAGGAGCTTGAGAG 965
|||||||||| | || |||||||||||||||||||| ||||| | |||||| || ||||
Sbjct 786 TTACCATTCACTATTCATGCACAACATGTGTATCCGTCCAACACCTGAGGAG-TT-AGAG 843
Query 966 -CTTT-GGTACTCCGGATTTTACTATATACAATGCTGGGCAGTTTCCATGTAATCGTTAC 1023
||| || || || ||||| || || || || || ||| | || || ||||| |||| |
Sbjct 844 AATTTCGGGACACCCGATTTCACGATTTATAACGCGGGGAAATTCCCGTGTAACCGTTTC 903
Query 1024 ACTCATTACATGACTTCGTCCACTAGCGTAGACCTTAATCT-GGCTAGGAGGGAAATGGT 1082
|||||||||||||| || ||||| || || ||| | || || || || || || |||||
Sbjct 904 ACTCATTACATGACATCTTCCACAAGTGTGGACATAAACCTAGG-AAGAAGAGAGATGGT 962
Query 1083 TATACTTGGTACTCAGTATGCTGGGGAAATGAAGAAGGGTCT-TTTCAGTGTGATGCATT 1141
|| || ||||| || |||||||| ||||||||||| || || ||| ||||||||||||
Sbjct 963 GATTCTAGGTACACAATATGCTGGAGAAATGAAGAAAGGACTCTTT-GGTGTGATGCATT 1021
Query 1142 ACCTT-ATGCCTAAGCG-TCGTATTCTCTCCCTTCATTCTGGATGCAATATGGGAAAAGA 1199
| || ||||||||| | | ||| | || ||||| ||||| || || |||||||||||
Sbjct 1022 A-TTTGATGCCTAAGAGAAAG-ATTTTGTCACTTCACTCTGGTTGTAACATGGGAAAAGA 1079
Query 1200 TGGAGATGTTGCTCTCTTCTTT-GGACTTTCAGGTACCGGGAAGACAACGCTGTCTACTG 1258
|||||||||||||||||| ||| |||||||| || ||||| ||||| || |||| ||||
Sbjct 1080 TGGAGATGTTGCTCTCTT-TTTCGGACTTTCTGGAACCGGAAAGACTACATTGTCGACTG 1138
Query 1259 ATCACAACAGGTATCTT-ATTGGAGATGATGAGCATTGTTGGACTGAGACTGGTGTTTCG 1317
|||| ||| | ||| || || ||||||||||| |||||||||| ||||||||| ||||||
Sbjct 1139 ATCATAACCGATAT-TTGATCGGAGATGATGAACATTGTTGGAGTGAGACTGGAGTTTCG 1197
Query 1318 AACATTGAGGGTGGGTGCTATGCTAAGTGTGTTGATCTT-TCGAGGGAGAAGGAGCCTGA 1376
|| || || ||||| || || || || || ||||| || | |||||||| ||||||||
Sbjct 1198 AATATCGAAGGTGGTTGTTACGCGAAATGCATTGAT-TTGGCAAGGGAGAAAGAGCCTGA 1256
Query 1377 TATCTGGAACGCTATCAAGTTTGGAACAGTTTTGGAAAATGTTGTGTTTGATGAGCACAC 1436
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1257 TATCTGGAACGCTATCAAGTTTGGAACCGTTTTGGAGAATGTTGTGTTTGATGAGCATAC 1316
Query 1437 -CAGAGAAGTGGATTACTCTGATAAATCTGTTACAGAGAACACACGTGCTGCCTACCCAA 1495
| |||||||||||||| | || ||||| || || |||||||||||||| || || || |
Sbjct 1317 AC-GAGAAGTGGATTACACAGACAAATCGGTGACGGAGAACACACGTGCAGCTTATCCGA 1375
Query 1496 TTGAGTTCATTCCAAA-TGCGAAAATACCTTGTGTTGGTCCACACCCGACA-AATGTGAT 1553
|||||| |||||| || | |||| || || || ||||| |||||||||| | || |||||
Sbjct 1376 TTGAGTACATTCCGAACT-CGAAGATTCCGTGCGTTGGACCACACCCGA-AGAACGTGAT 1433
Query 1554 ACT-TCTGGCTTGTGATGCCTTTGGTGT-TCTCCCACCTGTGAGCAAGCTGAATCTGGCA 1611
|| | |||||||||| ||||||||||| | | ||||| | |||||||| ||||| ||
Sbjct 1434 CCTGT-TGGCTTGTGACGCCTTTGGTGTGT-TGCCACCAATCAGCAAGCTCAATCTTGCT 1491
Query 1612 CAAACCATGTACCACTTCATCAGTGGTTACACTGCTCTGGTTGCTGGCACAGAGGATGGT 1671
|| || |||||||| ||||||||||| ||||||||||| ||||| || |||||||| ||
Sbjct 1492 CAGACTATGTACCATTTCATCAGTGGCTACACTGCTCTCGTTGCAGGAACAGAGGAAGG- 1550
Query 1672 A-TCAAGGAGCCAAC-AGCAACATTCTCAGCTTGCTTT-GGTGCAGCTTTCATAATG-TT 1727
| | ||||| || | |||||||||||| ||||| ||| ||||| |||||||| ||| ||
Sbjct 1551 AGTTAAGGAACCT-CGAGCAACATTCTCGGCTTG-TTTCGGTGCTGCTTTCATTATGCTT 1608
Query 1728 GCATCCCA-CAAAGTATGCAGCTATGTTAGCTGAGAAGATGAAGTCACAAGGTGCTACTG 1786
|| |||| | |||||||| |||||||| |||||||| ||| || | ||||| || || |
Sbjct 1609 -CA-CCCAACCAAGTATGCTGCTATGTTGGCTGAGAAAATGCAGGCTCAAGGAGCCACCG 1666
Query 1787 GTTGGCTCGTCAACACTGGTTGGTCTGGTGGCAGTTATGG-TGTTGGAAACAGAATCAAG 1845
||||||| || |||||||| ||||| ||||| || ||||| | | |||| |||||||||
Sbjct 1667 GTTGGCTTGTTAACACTGGATGGTCCGGTGGAAGCTATGGATCT-GGAAGTAGAATCAAG 1725
Query 1846 CTGGCATACACTA-GAAAGATCATCGATGCAATCCATTCGGGCAGTCTCTTGAAGGCAAA 1904
|||| ||||| | ||||||| |||||||| || |||||||| ||||||||||| |||
Sbjct 1726 TTGGCGTACAC-ACGAAAGATTATCGATGCTATACATTCGGGTAGTCTCTTGAATGCAT- 1783
Query 1905 CT-ACAAGAAAACC-GAAATCTTTGGATTTG-AAATCCCAACTGA-GATCGAAGG-GATA 1959
|| || ||||| | || || ||||| |||| |||| |||| ||| | | ||||| | |
Sbjct 1784 CTTACC-GAAAAACAGATATTTTTGG-TTTGGAAATTCCAAATGAAGTT-GAAGGAGTT- 1839
Query 1960 CCTTCAGAGAT-CTTGGACCCCGTCAACT-CCTGGTCTGATAAGAA-GGCACACAAAGAT 2016
||||| ||||| || ||| || | || | ||||| || || || ||| | | ||
Sbjct 1840 CCTTCTGAGATACT-GGAACCTATTAA-TGCCTGGGAAGACAA-AATGGCTTATGAGGAC 1896
Query 2017 AC-TCTGGTGAAACTGGGAGGTCTGTTCAAGAAG-AACTTCGAGGTTTTTGCTAAC-CAT 2073
|| | || ||||||||| ||| |||| || ||| || || ||| || | || |||
Sbjct 1897 ACAT-TGTTGAAACTGGCTGGTTTGTTTAA-AAGCAATTTTGAGACATTCAC-AAGTCAT 1953
Query 2074 AAGATTGGTG-TGGATGGTAAGCTT-ACGGAGGAGATTCTCGCTGCTGGTCCTATCTT 2129
|||||||||| || |||| || || || || |||||||| || |||||||||| |||
Sbjct 1954 AAGATTGGTGATG-ATGGAAAA-TTGACTGAAGAGATTCTTGCAGCTGGTCCTAACTT 2009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90921414815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5