BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37920.1 Length=1537 Score E Sequences producing significant alignments: (Bits) Value Ahg327981 jgi|Araly1|327981|fgenesh1_pm.C_scaffold_7000208 1954 0.0 Ahg928508 jgi|Araly1|928508|scaffold_300965.1 279 3e-74 > Ahg327981 jgi|Araly1|327981|fgenesh1_pm.C_scaffold_7000208 Length=1932 Score = 1954 bits (1058), Expect = 0.0 Identities = 1220/1299 (94%), Gaps = 7/1299 (1%) Strand=Plus/Plus Query 136 TGAGGGAGAAAAAATGGCGAATTTACTGGAAACATCAATCTTTTTCTCCTCTGCTGATAA 195 ||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 639 TGAGGGACAAAAAATGGCGAATTTACTGGAAACATCAATCTTCTTCTCCTCGGCTGATAA 698 Query 196 ATTACTGTCTTTCCCGCCTAAGAATTCTCAAACCCATCATCTCCCTTTCTCTGCTTTCAT 255 |||| | || ||| || || | |||||||||||||||| ||||||||||||||||||||| Sbjct 699 ATTAATTTCATTCTCGTCTCATAATTCTCAAACCCATCTTCTCCCTTTCTCTGCTTTCAT 758 Query 256 CAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCTTTGCTACCGACACTGTCAC 315 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 759 CAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCTTTGCTTCCGACACTGTCAC 818 Query 316 TTACAATGGCACT-ACAAGTGCGGAAGTAAAAAGCTCTGTTGAGGATCCAATGGAAGTTG 374 ||||| | ||| | || ||| |||| ||||||||||||||||||||||| |||||||||| Sbjct 819 TTACAGTAGCA-TCACCAGTACGGAGGTAAAAAGCTCTGTTGAGGATCCTATGGAAGTTG 877 Query 375 AGGTTGCTGAAGGTTACACTATGGCTCAGTTTTGTGACAAGATTATTGATCTCTTCTTGA 434 |||||||| |||| ||||||||||||||||| ||||||||||| |||||||| || |||| Sbjct 878 AGGTTGCTCAAGGCTACACTATGGCTCAGTTCTGTGACAAGATCATTGATCTTTTTTTGA 937 Query 435 ATGAGAAACCTAAAGTTAAACAATGGAAGACGTATTTGGTTTTAAGAGATGAATGGAACA 494 |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 938 ATGAGAAACCTAGAGTTAAACAATGGAAGACTTATTTGGTTTTAAGAGATGAATGGAACA 997 Query 495 AGTACAGTGTTAATTTCTATAAGCGTTGCAGAATCCGAGCTGATACCGAAACTGATCCTA 554 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 998 AGTACAGTGTTAATTTCTATAGGCGTTGCAGAATCCGAGCTGATTCCGAAACTGATCCTA 1057 Query 555 TATTGAAGCAGAAACTGGTATCTTTGGAAAGTAAAGTCAAGAAGATAGATAAGGAAATGG 614 ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1058 TATTGAAGCAGAAGCTGTTATCTTTGGAAAGTAAAGTCAAGAAGATAGATGAGGAAATGG 1117 Query 615 AGAAACACAATGACCTTTTGAAGGAGATTCAAGAAAACCCAACAGACATAAACGCAATCG 674 |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1118 AGAAGCACAATGACCTTTTGAAGGAGATTCAAGAAAACCCGACTGACATAAACGCAATCG 1177 Query 675 CTGCCAAGAGACGCAGAGACTTTACGGGAGAGTTTTTCCGCTATGTTACTTTGTTATCAG 734 ||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||| Sbjct 1178 CTGCCAAGAGACGTAGAGACTTCACAGGAGAGTTTTTCCGCTATGTTGCTTTGTTATCAG 1237 Query 735 AAACTCTTGATGGCTTGGAAGACCGAGATGCTGTTGCGAGGCTTGCAACTAGATGTTTAT 794 |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| Sbjct 1238 AAACTCTTGATGGCTTAGAAGACCGAGATGCTGTCGCAAGGCTTGCAACTAGATGTTTAT 1297 Query 795 CTGCTGTGAGTGCTTATGACAACACGTTGGAGAGTGTTGAGACTCTAGATACTGCTCAAG 854 |||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| Sbjct 1298 CTGCTGTGAGTGCTTATGACAATACATTGGAGAGTGTTGAGACTCTAGATGCTGCTCAAG 1357 Query 855 CAAAGTTTGAAGATATTTTAAACTCTCCATCCGTGGATTCTGCTTGCGAAAAGATCAGAA 914 |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1358 CAAAGTTTGATGATATTTTAAACTCTCCATCCGTGGATGCCGCTTGCGAAAAGATCAGAA 1417 Query 915 GTTTAGCCAAGGCAAAGGAGCTTGATTCCTCATTGATCTTATTGATCAACAGTGCATACG 974 ||||||||||| |||||||||| ||||| |||||||||||||| || |||||||| |||| Sbjct 1418 GTTTAGCCAAGTCAAAGGAGCTAGATTCTTCATTGATCTTATTAATAAACAGTGCTTACG 1477 Query 975 CTGCTGCAAAAGAGTCTCAAACTGTTACGAACGAGGCTAAAGACATAATGTATCATTTAT 1034 |||| || |||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 1478 CTGCAGCTAAAGAGTCTCAAACCGTTACAAACGAGGCTAAAGACGTAATGTATCATTTAT 1537 Query 1035 ACAAAGCTACAAAGAGCAGTCTTAGAAGCATCACACCGAAAGAGATCAAACTTTTAAAGT 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1538 ACAAAGCTACAAAGAGCAGTCTTAGAAGCATCACACCGAAAGAGATCAAACTTTTAAAGT 1597 Query 1095 ACTTACTCAACATAACAGACCCCGAAGAACGATTCTCTGCCCTAGCTACAGCATTCTCTC 1154 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1598 ACTTACTCAACATAACAGACCCCGAAGAACGATTCTCTGCTCTAGCAACAGCATTCTCTC 1657 Query 1155 CTGGTGATGACCACGAAGCTAAGGACCCTAAAGCATTATACACGACGCCAAAGGAGCTGC 1214 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1658 CTGGCGATGACCATGAAGCTAAGGACCCTAAAGCATTATACACGACGCCAAAGGAGCTGC 1717 Query 1215 ATAAGTGGATAAAGATAATGCTTGATGCTTACCATCTCAACAAAGAAGAAACAGACATTA 1274 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1718 ATAAGTGGATAAAGATAATGCTTGATGCATACCATCTCAACAAAGAAGAAACTGACATTA 1777 Query 1275 AAGAAGCTAAACAGATGAGCCAACCTATCGTTATTCAGCGGCTTTTCATTCTCAAGGACA 1334 ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| Sbjct 1778 AAGAAGCTAAACAGATGAGCCAACCAATCGTGATTCAGCGGCTTTTCATCCTCAAGGACA 1837 Query 1335 CTATCGAAGACGAGTATTTAGACAAGAAAACAATCGTGGCTGATGAAACTCCAAAGAAGG 1394 | |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1838 CGATCGAAGATGAGTATTTAGACAAGAAAACAATCGTGGCTGATGAAAATCCAAAGAAGG 1897 Query 1395 AAGAAGAAGATACGA-CTATTGAAGATTTTTTGAACTGA 1432 ||||||| ||| | || ||||||| |||||||||||| Sbjct 1898 AAGAAGA---TAC-ATCTGTTGAAGAATTTTTGAACTGA 1932 > Ahg928508 jgi|Araly1|928508|scaffold_300965.1 Length=227 Score = 279 bits (151), Expect = 3e-74 Identities = 178/190 (94%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 238 CCC-TTTCTCTGCTTTCATCAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCT 296 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCCTTTTCTCTGCTTTCATCAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCT 60 Query 297 TTGCTACCGACACTGTCACTTACAATGGCACTACAAGTGCGGAAGTAAAAAGCTCTGTTG 356 |||||||||||||||||||||||| ||||||||| || |||||||||||| ||||| Sbjct 61 TTGCTACCGACACTGTCACTTACAGTGGCACTACCAG-----AAGTAAAAAGCTTTGTTG 115 Query 357 AGGATCCAATGGAAGTTGAGGTTGCTGAAGGTTACACTATGGCTCAGTTTTGTGACAAGA 416 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 116 AGGATCTTATGGAAGTTGAGGTTGCTGAAGGTTACACTATGGCTCAGTTCTGTGACAAGA 175 Query 417 TTATTGATCT 426 |||||||||| Sbjct 176 TTATTGATCT 185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57554360195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5