BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37930.1 Length=1899 Score E Sequences producing significant alignments: (Bits) Value Ahg490821 jgi|Araly1|490821|fgenesh2_kg.7__254__AT4G37930.1 2942 0.0 Ahg489509 jgi|Araly1|489509|fgenesh2_kg.6__2643__AT5G26780.3 876 0.0 > Ahg490821 jgi|Araly1|490821|fgenesh2_kg.7__254__AT4G37930.1 Length=1850 Score = 2942 bits (1593), Expect = 0.0 Identities = 1777/1861 (95%), Gaps = 32/1861 (2%) Strand=Plus/Plus Query 1 AAAAGAGGGAAAAAATTCGAAAATTTGCTGCAACCACCAAAAGCTCAGCCAAAAGCAGAG 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 AAAAGAGGGAAAAAATTCGAAAATTTTCTGCAACCACCAAAAGCTCAGCCAAAAGCAGAG 60 Query 61 GCCACAA-T-TCTC-TCA------AACAAGATAAACCCAATTTTGTTATTTTTGTtctct 111 ||||||| | |||| ||| |||||||||||||||||||| || || | | Sbjct 61 GCCACAATTCTCTCTTCATCTCTCCACAAGATAAACCCAATTTTG------TT-TT-T-T 111 Query 112 cttctctctcGTTCATGTTTCAAATCTGTTTCTAGGGTTTCACAAACC----AGAGATAG 167 || | | | |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 112 -TT-T-T-T-GTTCATGTTTCAAATCTGTTTCTAGGGTTTCACAAACCAGAGAGAGAGAG 166 Query 168 AGAGAGGTTTAGCGAAAAATGGCGATGGCCATGGCTCTTCGAAGGCTTTCTTCTTCAATT 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 AGAGAGGTTTAGCGAAAAATGGCGATGGCCATGGCTCTTCGAAGGCTTTCTTCTTCAATT 226 Query 228 GACAAACCCATTCGTCCTCTTATTC-GATCCACTTCATGTTACATGTCTTCTTTGCCCAG 286 |||||||||||||||||||||| || |||||||||| |||||||||||||| |||||||| Sbjct 227 GACAAACCCATTCGTCCTCTTA-TCAGATCCACTTCTTGTTACATGTCTTCGTTGCCCAG 285 Query 287 TGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTTGGCCAAAACAGCTTAACGCACC 346 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 286 TGAAGCTGTTGATGAGAAGGAGAGGTCTCGTGTCACTTGGCCAAAACAGCTTAACGCACC 345 Query 347 TTTAGAGGAGGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATG 406 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 TTTAGAGGAGGTTGACCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATG 405 Query 407 GAAGGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAAGCTGT 466 |||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 406 GAAGGGACTTGAGCTTATTCCATCTGAGAACTTCACATCTGTTTCCGTGATGCAAGCTGT 465 Query 467 TGGGTCTGTCATGACTAACAAATACAGTGAAGGCTATCCTGGTGCCAGATACTATGGAGG 526 ||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 466 TGGGTCTGTGATGACTAACAAATATAGTGAAGGGTATCCTGGTGCGAGATACTATGGAGG 525 Query 527 AAATGAGTATATAGACATGGCAGAAACCTTATGCCAGAAGCGCGCTCTTGAAGCTTTCCG 586 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 AAATGAGTACATAGACATGGCAGAAACCTTATGCCAGAAGCGCGCTCTTGAAGCTTTCCG 585 Query 587 GTTAGATCCTGAAAAGTGGGGAGTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTT 646 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 586 GTTAGATCCTGAAAAGTGGGGAGTGAATGTGCAACCTTTGTCTGGATCTCCTGCCAACTT 645 Query 647 CCATGTGTACACTGCATTGTTAAAGCCTCATGAAAGAATCATGGCACTTGATCTTCCTCA 706 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 646 CCATGTCTACACTGCATTGTTAAAGCCTCATGAAAGAATCATGGCTCTTGATCTTCCTCA 705 Query 707 TGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTGTCTAT 766 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 706 TGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAAGAAGATATCTGCTGTGTCTAT 765 Query 767 CTTCTTTGAAACAATGCCCTATAGATTGGACGAGAGCACTGGCTACATCGACTACGATCA 826 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 766 CTTCTTTGAAACAATGCCTTATCGATTGGACGAGAGCACTGGCTACATCGACTACGATCA 825 Query 827 GATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTA 886 |||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 826 GATGGAGAAAAGCGCTACTCTTTTCAGGCCAAAACTGATTGTTGCTGGTGCGAGTGCTTA 885 Query 887 TGCTAGATTGTATGACTATGCCCGCATCAGAAAGGTCTGTAACAAGCAAAAAGCTGTAAT 946 |||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 886 TGCTCGATTGTATGATTATGCCCGCATCCGAAAGGTCTGTAACAAGCAAAAAGCTGTAAT 945 Query 947 GCTAGCAGATATGGCACACATCAGTGGTTTGGTTGCTGCTAATGTAATCCCTTCACCGTT 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 946 GCTAGCAGATATGGCACACATCAGTGGTTTGGTTGCTGCTAATGTAATCCCTTCACCGTT 1005 Query 1007 CGACTATGCTGATGTTGTAACCACCACAACTCACAAGTCACTTCGTGGACCCCGTGGAGC 1066 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1006 CGACTATGCTGATGTTGTAACCACCACAACCCACAAGTCACTTCGTGGACCCCGTGGAGC 1065 Query 1067 CATGATTTTCTTCAGAAAGGGTGTTAAGGAAATTAACAAGCAAGGGAAAGAGGTTTTGTA 1126 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1066 CATGATTTTCTTCAGAAAGGGTGTTAAGGAAATTAACAAACAAGGGAAAGAGGTTTTGTA 1125 Query 1127 TGATTTTGAAGACAAGATCAACCAAGCTGTCTTCCCTGGTCTTCAAGGTGGTCCACACAA 1186 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1126 TGATTTTGAAGACAAGATCAATCAAGCTGTCTTCCCTGGTCTTCAAGGTGGACCACACAA 1185 Query 1187 CCACACTATCACAGGACTAGCTGTTGCTTTGAAACAGGCAACTACTTCAGAGTACAAAGC 1246 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1186 CCACACTATTACAGGATTAGCTGTTGCTTTGAAACAGGCAACTACTTCAGAGTACAAAGC 1245 Query 1247 ATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGACTCTAATGGAGAGAGG 1306 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1246 ATACCAAGAGCAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGACTCTGATGGAGAAAGG 1305 Query 1307 ATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCT-AAAGCCCA 1365 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 1306 ATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCTGAAA-CCCA 1364 Query 1366 AGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACA 1425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 AGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACA 1424 Query 1426 AAAACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATGGGTACTC 1485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1425 AAAACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATGGGTACTC 1484 Query 1486 CTGCTCTCACTTCCAGAGGCTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTCG 1545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1485 CTGCTCTCACTTCCAGAGGCTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTCG 1544 Query 1546 ACAAAGCTGTGACAATAGCTCTCAAAGTCAAATCTGAAGCTCAAGGAACCAAGTTGAAGG 1605 |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| Sbjct 1545 ACAAAGCTGTGACATTGGCTCTCAAAGTCAAATCTGAAGCTCAAGGAACCAAGCTGAAGG 1604 Query 1606 ATTTCGTGTCAGCAATGGAATCCTCTTCAACCATCCAATCCGAGATTGCGAAACTGCGCC 1665 |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1605 ATTTTGTGTCAGCAATGGAATCTTCTTCAACCATTCAATCCGAGATTGCGAAACTGCGCC 1664 Query 1666 ATGAAGTCGAGGAATTCGCTAAGCAGTTCCCAACAATTGGGTTTGAGAAAGAAACCATGA 1725 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1665 ATGAAGTCGAGGAGTTCGCTAAGCAGTTCCCAACAATTGGTTTTGAGAAAGAAACCATGA 1724 Query 1726 AGTACAAGAACTAAACTGTTTCACCCCACAAGTGTTTTCTGTTATGCTTTGAATTCCCAT 1785 ||||||||||||||||||||| | ||||||||| |||| | | ||||||||||||||||| Sbjct 1725 AGTACAAGAACTAAACTGTTTTATCCCACAAGTCTTTTTTATCATGCTTTGAATTCCCAT 1784 Query 1786 GGAATGTATAGATGATACATGTAAAACTCTATTTTCACGCTATGCGAAAAATAATGATCT 1845 ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 1785 GGAATGTATAGATGATACATGTAAAACACTATTTT-ACGCTATGCGAAAAATAATGATCT 1843 Query 1846 G 1846 | Sbjct 1844 G 1844 > Ahg489509 jgi|Araly1|489509|fgenesh2_kg.6__2643__AT5G26780.3 Length=1920 Score = 876 bits (474), Expect = 0.0 Identities = 1093/1386 (79%), Gaps = 66/1386 (5%) Strand=Plus/Plus Query 390 GAGAAAGCTAGACAATGGAAGGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTG 449 ||||||||||| |||||||||||| |||||||||| || || ||||| ||||| ||| | Sbjct 256 GAGAAAGCTAGGCAATGGAAGGGATTTGAACTTATACCTTCAGAGAATTTCACCTCTCTC 315 Query 450 TCGGTGATGCAAGCTGTTGGGTCTGTCATGACTAACAAATACAGTGAAGGCTATCCTGGT 509 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||||||||| Sbjct 316 TCGGTTATGCAAGCGGTTGGTTCGGTTATGACTAATAAGTATAGTGAAGGATATCCTGGT 375 Query 510 GCCAGATACTATGGAGGAAATGAGTATATAGACATGGCAGAAACCTTATGCCAGAAGCGC 569 || ||||||||||||||||||||||| || |||||||| || | ||||| || || ||| Sbjct 376 GCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGTCATTATGTCAAAAACGC 435 Query 570 GCTCTT-GAAGCTTTCCGGTTAGATCC-T-GAAAAGTGGGGAGTGAATGTTCAACCTTTG 626 || || |||||||| | ||||||||| | | ||| |||||||| ||||| || |||| Sbjct 436 GC-ATTAGAAGCTTTTCAGTTAGATCCTTCG-AAA-TGGGGAGTCAATGTGCAGTCTTTA 492 Query 627 TCTGGATCTCCTGCCAACTTCCATGTGTACACTGCATTGTTAAAGCCTCATGAAAGAATC 686 || ||||| || || |||||||| || ||||||||||||||||||||||||||||||||| Sbjct 493 TCAGGATCACCAGCTAACTTCCAAGTTTACACTGCATTGTTAAAGCCTCATGAAAGAATC 552 Query 687 ATGGCACTTGATCTT-CCTCATGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAA 745 |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 553 ATGGCACTTGAT-TTACCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACGAA 611 Query 746 GAAGATATCAGCTGTGTCTATCTTCTTTGAAACAATGCCCTATAGATTGGACGAGAGCAC 805 ||| ||||| ||||| || ||||| ||||| |||||||| || |||||||| |||| ||| Sbjct 612 GAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACAC 671 Query 806 TGGCTACATCGACTACGATCAGATGGAGAAAAGTGCTACT-CTTTTCAGGCCAAAA-TTG 863 ||| ||||| || ||||||||| | || |||||||| | |||||||| || ||| || Sbjct 672 TGGTTACATTGATTACGATCAGCTAGAAAAAAGTGCGG-TGCTTTTCAGACCCAAACTT- 729 Query 864 ATTGTTGCTGGTGCAAGTGCTTATGCTAGAT-TGTATGACTATGCCCGCAT-CAGAAAGG 921 |||||||| |||||||||||||||||| | | | ||||| ||||| || || | | |||| Sbjct 730 ATTGTTGCGGGTGCAAGTGCTTATGCTCG-TCTATATGATTATGCACGTATTC-GTAAGG 787 Query 922 TCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGTGGTTTGGTTG 981 | ||| |||||||||| || || ||||| || |||||||| || || ||||| ||||||| Sbjct 788 TTTGTGACAAGCAAAAGGCAGTTATGCTGGCTGATATGGCTCATATTAGTGGGTTGGTTG 847 Query 982 CTGCTAATGTAATCCCTTCACCGTTCGACTATGCTGATGTTGTAACCACCACAACTCACA 1041 ||||| || || ||||| || || || ||||| |||||||| || || |||||||||| Sbjct 848 CTGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATGTTGTTACAACTACAACTCACA 907 Query 1042 AGTCACTTCGTGGACCCCGTGGAGCCATGATTTTCTTCAGAAAGGGTGTTAAG-GAAATT 1100 | || ||||| || || | || || ||||| ||||| || ||||| ||||| || ||| Sbjct 908 AATCGCTTCGCGGTCCTAGAGGGGCTATGATATTCTTTAGGAAGGG-GTTAAAAGAGATT 966 Query 1101 AACAAGCAAGGGAAAGAGGTTTTGTATGATTTTGAAGACAAGA-TCAACCAAGCTGTCTT 1159 ||||| |||||||||||||| ||||||| | ||| |||| || | ||||||||||| || Sbjct 967 AACAAACAAGGGAAAGAGGTCATGTATGACTATGAGGACA-GAATTAACCAAGCTGTTTT 1025 Query 1160 CCCTGGTCTTCAAGGTGGTCCACACAACCACACTATCACAGGACTAGCTGTTGCTTTGAA 1219 ||||| || |||||||||||||| || |||||||| || || ||||| |||||| |||| Sbjct 1026 TCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGAA 1085 Query 1220 ACAGGCAACTACTTCAGAGTACAAAGCATACCAAGAACAAGTCCTGAGTAACAG-TGCAA 1278 ||||| | || | ||||| || || ||||| || ||||| || |||| | | ||| Sbjct 1086 GCAGGCGAGAACACCTGAGTATAAGGCCTACCAGGATCAAGTTCTCCGTAATTGCT-CAA 1144 Query 1279 AGTTTGCT---C-----A---GAC-T-CTAAT--G---GAGAGAGGATATGAACTT-GTT 1319 |||||||| | | ||| | || | | | || ||||||||| || || Sbjct 1145 AGTTTGCTGAGCTGGGTATAAGACCTACTTCTTTGCTTGCGAAAGGATATGAT-TTAGTG 1203 Query 1320 TCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCT-AAAGCCCAAGGGAATTGATGG 1378 ||||| || ||||| || ||| | ||| | |||||||| ||| | |||||||| ||||| Sbjct 1204 TCTGGAGGCACTGAGAATCATTTAGTTTTGGTGAATCTGAAAAAC-AAGGGAATAGATGG 1262 Query 1379 ATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACAAAAACACTGTTCC 1438 ||| ||||| || ||||| || ||| | || || |||||| | ||||| || |||||||| Sbjct 1263 ATCAAGAGTGGAAAAAGTATTAGAATCAGTACATATTGCAGCAAACAAGAATACTGTTCC 1322 Query 1439 TGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATGGGTACTCCTGCTCTCACTTC 1498 ||| |||||||||||||||||||| ||||| ||| | ||||| || || || ||||| || Sbjct 1323 TGGTGATGTTTCTGCCATGGTTCCAGGTGGCATCCGTATGGGAACACCAGCCCTCACATC 1382 Query 1499 CAGAGGCTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTCGACAAAGCTGTGAC 1558 ||||| || |||||||||| ||||| ||||| || || || || || ||| || | Sbjct 1383 AAGAGGATTCATTGAGGAAGATTTTGCAAAAGTGGCGGAGTATTTTGATTTAGCCGTCA- 1441 Query 1559 A-ATAGCTCTCAAAG-TCAAATCTGAAG-CTCAAGGAACCAAGTTGAAGGA-TTTCGT-G 1613 | ||||| || |||| |||| | || | |||||||||| ||||||||||| ||| || | Sbjct 1442 AGATAGC-CTTAAAGATCAAGGCAGA-GTCTCAAGGAACAAAGTTGAAGGACTTT-GTAG 1498 Query 1614 TCAGCAATGGAATCCTCTTC-AACCATC-CAATCCGAGATTGCGAAACT-GCGCCATGAA 1670 || ||||| |||| | || || || || ||||| || ||| | ||| | || Sbjct 1499 -CAACAATGCAATCAAATGAGAA--ATTACAGTCAGAGATGGC-AAAGTTGCGTGA-GAT 1553 Query 1671 G-TCGAGGAAT-TCGCTAAGCAGTTCCCAACAATTGGGTTTGAGAAAGAAACCATGA-AG 1727 | | || |||| | || ||||| ||||||||||||||||| |||||||| || |||| | Sbjct 1554 GGTAGAAGAATAT-GCGAAGCAATTCCCAACAATTGGGTTCGAGAAAGAGACGATGAGA- 1611 Query 1728 TACAAG 1733 |||||| Sbjct 1612 TACAAG 1617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71343028885 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5