BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37980.1 Length=1501 Score E Sequences producing significant alignments: (Bits) Value Ahg490817 jgi|Araly1|490817|fgenesh2_kg.7__250__AT4G37980.1 2246 0.0 Ahg944040 jgi|Araly1|944040|scaffold_700269.1 1105 0.0 > Ahg490817 jgi|Araly1|490817|fgenesh2_kg.7__250__AT4G37980.1 Length=1492 Score = 2246 bits (1216), Expect = 0.0 Identities = 1404/1495 (94%), Gaps = 12/1495 (1%) Strand=Plus/Plus Query 16 ATCACACTACTACCAGATCGAGTAACCATTAGGGACCATTAATTCACGTGGACGTAGTGA 75 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 1 ATCACACTACTACCAGATCGAGTAACCATAAGGGACCATCAATTCACGTGGACGTAGTGA 60 Query 76 ATATGGTCCTTGTGAATTAATGAGTACGTAATTGTCCTCATTCATATATGGATCGGTTCC 135 ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 61 ATATGGTCCTTGTAAATTAATGAGTACGTAATTGTCCTCATTCACATATCGATCGGTTCC 120 Query 136 AC--A-A-ACATTTCCTGTATAAAATTCTACATCTTTCCTCTCATTATTATCTCTACACT 191 || | | || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ACAGACAGACCTTTCCTGTATAAAATTCGACATCTTTCCTCTCATTATTATCTCTACACT 180 Query 192 TCTCATCTCTCAATCCCATTCGCTTATTATTTATCCATATGGGAAAGGTTCTTGAGAAGG 251 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 TCTCATCTCTCAATCCCATTCGCTTATTGTTTATCCATATGGGAAAGGTTCTTGAGAAGG 240 Query 252 AGGCGTTTGGATTGGCTGCGAAAGACGAATCGGGAATTCTTTCGCCTTTCAGTTTCTCTA 311 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGGCGTTTGGATTAGCCGCGAAAGACGAATCGGGAATTCTTTCGCCTTTCAGTTTCTCTA 300 Query 312 GAAGGGCGACGGGTGAAAAGGATGTGAGGTTCAAAGTCTTGTTCTGTGGAATTTGCCACA 371 |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAAGGGAGACAGGAGAAAAGGATGTGAGGTTCAAAGTCTTGTTCTGTGGAATTTGCCACA 360 Query 372 CTGATCTGAGTATGGCCAAAAACGAATGGGGGTTAACTACTTATCCTCTTGTCCCTGGGC 431 | |||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||| Sbjct 361 CAGATCTGAGTATGGCTAAAAACGAATGGGGATTTACTACTTATCCCCTTGTCCCTGGGC 420 Query 432 ATGAGATTGTGGGCGTGGTGACTGAAGTTGGAGCCAAAGTGAAAAAATTCAACGCTGGAG 491 ||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| | Sbjct 421 ATGAGATTGTGGGGGTGGTGACTGAAGTTGGAGCCAAAGTGACCAAATTCAACGTTGGGG 480 Query 492 ACAAAGTCGGAGTTGGCTATATGGCCGGCTCGTGCAGGTCATGTGACAGCTGCAATGATG 551 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| Sbjct 481 ACAAAGTCGGAGTTGGCTATATGGCCGGCTCATGCCGGTCATGTGACAGCTGCAGCGATG 540 Query 552 GCGACGAGAACTACTGTCCAAAGATGATCTTAACGTCCGGAGCCAAAAACTT-TGACGAT 610 |||| ||||||||||||||||||||| || |||| |||||||||||| | || ||||||| Sbjct 541 GCGAAGAGAACTACTGTCCAAAGATGGTCCTAACATCCGGAGCCAAAGA-TTATGACGAT 599 Query 611 ACCATGACCCATGGTGGATACTCCGACCACATGGTGTGTGCTGAGGATTTCATCATCCGT 670 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TCCATGACCCATGGTGGTTACTCCGACCACATGGTGTGTGCTGAGGATTTCATCATCCGT 659 Query 671 ATTCCTGACAATCTCCCATTAGACGGTGCCGCACCACTACTCTGCGCCGGGGTCACGGTC 730 |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 660 ATTCCTAAAAATCTCCCATTAGACGGTGCCGCACCACTACTCTGTGCCGGGGTCACGGTC 719 Query 731 TACTCCCCCATGAAGTATCACGGGCTCGACAAGCCCGGTATGCACATCGGTGTGGTGGGA 790 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 720 TACTCCCCGATGAAGTATCACGGGCTCGACAAGCCCGGTATGCACATTGGTGTGGTGGGA 779 Query 791 CTAGGCGGTTTGGGCCATGTAGCAGTGAAATTTGCTAAGGCTATGGGTACTAAAGTTACG 850 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CTAGGCGGTTTGGGTCATGTAGCAGTGAAATTTGCTAAGGCTATGGGTACTAAAGTTACG 839 Query 851 GTTATTAGTACTTCGGAGCGTAAGAGAGACGAGGCCGTTACTCGGCTTGGTGCGGATGCC 910 |||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 840 GTTATTAGTACTTCAGAGCGTAAGAGAGACGAGGCAGTTAATCGGCTTGGTGCGGATGCC 899 Query 911 TTCTTGGTGAGCCGTGACCCGAAACAAATGAAGGATGCAATGGGGACTATGGATGGTATC 970 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 900 TTCTTGGTGAGCCGTGACCCGAAACAAATGGAGGATGCAATGGGGACTATGGATGGTATA 959 Query 971 ATTGATACCGTATCTGCGACCCATCCACTTCTTCCGCTGCTTGGTTTGCTTAAAAATAAG 1030 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 960 ATTGATACCGTATCTGCAACCCATCCGCTTCTTCCGCTGCTTGGTTTGCTTAAAAATAAG 1019 Query 1031 GGAAAACTTGTTATGGTTGGTGCACCAGCAGAACCGCTCGAGCTTCCTGTTTTTCCTCTC 1090 ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| Sbjct 1020 GGAAAACTTGTTATGGTTGGTGCACCAGCGGAACCGCTCGAGCTTCCTGTTATGCCTCTC 1079 Query 1091 ATCTTTGGGCGGAAGATGGTGGTGGGTAGTATGGTAGGAGGTATAAAGGAGACGCAAGAG 1150 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 1080 ATCTTTGGGCGGAAGATGGTGGTGGGAAGTATGGTAGGAAGTATAAAGGAGACGCAAGAG 1139 Query 1151 ATGGTGGATTTGGCTGGAAAACACAACATCACGGCGGATATTGAGCTCATCTCTGCGGAT 1210 |||||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1140 ATGGTGGACTTGGCCGGAAAACACAATGTCACTGCGGATATTGAGCTCATCTCTGCGGAT 1199 Query 1211 TATGTCAACACCGCCATGGAACGGCTTGCAAAGGCTGACGTTAAGTACCGATTTGTGATT 1270 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1200 TATGTCAACACCGCCATGGAACGGCTTGCAAAGGGTGACGTTAAGTACCGATTTGTGATT 1259 Query 1271 GATGTTGCCAACACGATGAAGCCAACTCCTTAACTAGAAAGCTTAAGAATTGAATATCCC 1330 || ||||| ||||| |||||||||||| ||||| ||||||||| ||||||||||| |||| Sbjct 1260 GACGTTGCGAACACAATGAAGCCAACTTCTTAATTAGAAAGCTAAAGAATTGAATTTCCC 1319 Query 1331 CAAAGCttttttcatgttttt-gcttgtttgtttgatgttgtttgctggcgactttgtgt 1389 ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| || Sbjct 1320 CAAAGCTTTTTTCATGTTTTTTGCTTGTTTGGTTGATGTTGTTTGCTGACGACTTTTTGA 1379 Query 1390 gtAGTATTACCACACTGCATGTACTTTATCAGTTGAATAAACTTGAATATTGTATTTAAT 1449 |||||| ||||| | |||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1380 GTAGTACTACCA-A-TGCATGTACTTTATCAATTCAATAAACTTGAATATTGTATTTAAT 1437 Query 1450 AAGCTATCTACAT--T-AGATTTTGGGGAAGTTTGATTAAAATTTATTCCGATTG 1501 ||||||| || || | |||||||||||||| || | ||||||||| || ||||| Sbjct 1438 AAGCTATATATATGATTAGATTTTGGGGAAGCTTAAGTAAAATTTACTCGGATTG 1492 > Ahg944040 jgi|Araly1|944040|scaffold_700269.1 Length=1122 Score = 1105 bits (598), Expect = 0.0 Identities = 958/1130 (85%), Gaps = 32/1130 (3%) Strand=Plus/Plus Query 217 ATTATTT-ATCCA-TATGGGAAAGGTTCTTGAGAAGGAGGCGTTTGGATTGGCTGCGAAA 274 ||| ||| ||| | |||||||||||||||| |||| |||||||| || | || |||||| Sbjct 7 ATTGTTTGATCGATTATGGGAAAGGTTCTTCAGAAAGAGGCGTTCGGGCTAGCCGCGAAA 66 Query 275 GACGAA-TCGGGAATTCTTTCGCC-TTTCAGTTTCTCTAGAAGGGCGACGGGTGAAAAGG 332 ||| || || ||| |||| ||||| |||| ||||| ||||||||| || || ||||||| Sbjct 67 GAC-AATTCCGGAGTTCTCTCGCCTTTTC-GTTTCACTAGAAGGGAAACAGGAGAAAAGG 124 Query 333 ATGTGAGGTTCAAAGTCTTGTTCTGTGGAATTTGCCACACTGATCTG-AGTATGGCCAAA 391 |||||||||||||||| || |||||||||||||| ||| ||||| || | ||||| ||| Sbjct 125 ATGTGAGGTTCAAAGTGTTATTCTGTGGAATTTGTCACTCTGATTTGCA-TATGGTCAAG 183 Query 392 AACGAATGGGGGTTAACTACTTATCCTCTTGTCCCTGGGCATGAGATTGTGGGCGTGGTG 451 ||||||||||| | ||||||||||||||||||| || |||||||| |||||||||||| Sbjct 184 AACGAATGGGGAATGTCTACTTATCCTCTTGTCCCAGGACATGAGATCGTGGGCGTGGTG 243 Query 452 ACTGAAGTTGGAGCCAAAGTGAAAAAATTCAACGCTGGAGACAAAGTCGGAGTTGGCT-A 510 |||||| | ||||||||||||| |||||||| | ||||| ||||| ||||| || | Sbjct 244 ACTGAAATCGGAGCCAAAGTGACTAAATTCAAAACCGGAGAAAAAGTTGGAGTCGGGTGC 303 Query 511 TATGGCCGGCTCGTGCAGGTCATGTGACAGCTGCAATGATGGCGA-CGAGAACTACTGTC 569 | ||| | |||| ||| |||||||||||||||||| || || | || |||||||||| Sbjct 304 T-TGGTCAGCTCATGCGGGTCATGTGACAGCTGCACCGAAGG-TATGGAAAACTACTGTC 361 Query 570 CAAAGAT-GATCTTAACGTCCGGAGCCAAAAACTTTGACGATACCATGACCCATGGTGGA 628 | || || |||| ||||| |||| ||| ||| ||||| ||||| || | ||||| Sbjct 362 CGAA-ATCGATCCAAACGTACGGATTCAAGTACTACGACGACACCATAACATACGGTGGT 420 Query 629 TACTCCGACCACATGGTGTGTG-CTG-AGGATTTCATCATCCGTATTCCTGACAATCTCC 686 ||||||||||||||||| || | | | ||| |||||||||||||||||| |||||||||| Sbjct 421 TACTCCGACCACATGGTTTGCGAC-GAAGG-TTTCATCATCCGTATTCCCGACAATCTCC 478 Query 687 CATTAGACGGTGCCGCACCACTACTCTGCGCCGGGGTCACGGTCTACTCCCCCATGAAGT 746 | || |||| |||||| || || ||||| |||||| |||||||||| ||||| ||||||| Sbjct 479 CCTTGGACGCTGCCGCGCCGCTCCTCTGTGCCGGGATCACGGTCTATTCCCCTATGAAGT 538 Query 747 ATCACGGGCTCGACAAGCCCGGTATGCACATCGGTGTGGTGGGACTAGGCGGTTTGGGCC 806 |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| || | Sbjct 539 ATCACGGGCTCGACAAACCCGGTATGCACATCGGTGTGGTAGGATTAGGCGGTTTAGGTC 598 Query 807 ATGTAGCAGTGAAATTTGCTAAGGCTATGGGTACTAAAGTTACGGTTATTAGTACTTCGG 866 |||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 599 ATGTAGGAGTGAAATTTGCCAAGGCTATGGGTACTAAGGTTACGGTTATTAGTACTTCGG 658 Query 867 AGCGTAAGAGAGACGAGGCCG-TTACTCGGCTTGGTGCGGATGCCTTCTTGGTGAGCCGT 925 || | ||||||||||||| || ||| |||||||||||||||||| ||||||||||||||| Sbjct 659 AGAGAAAGAGAGACGAGG-CGATTAATCGGCTTGGTGCGGATGCTTTCTTGGTGAGCCGT 717 Query 926 GACCCGAAACAAATGAAGGATGCAATGGGGACTATGGATGGTATCATTGATACCGTATCT 985 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 718 GACCCGAAACAAATTAAGGATGCAATGGGGACTATGGATGGTATTATTGATACCGTATCT 777 Query 986 GCGACCCATCCACTTCTTCCGCTGCTTGGTTTGCTTAAAAATAAGGGAAAACTTGTTATG 1045 ||||| ||| | ||||||||| |||| |||||||| || |||||||||||||||||||| Sbjct 778 GCGACTCATTCGCTTCTTCCGTTGCTCGGTTTGCTGAAGCATAAGGGAAAACTTGTTATG 837 Query 1046 GTTGGTGCACCAGCAGAA-CCGCTCGAGCTTCCTGTTTTTCCTCTCATCTTTGGGCGGAA 1104 |||||||| || | |||| || |||||||| || || | |||||||| |||| | |||| Sbjct 838 GTTGGTGCGCC-GGAGAAGCCACTCGAGCTACCGGTCATGCCTCTCATATTTGAGAGGAA 896 Query 1105 GATGGTGGTGGGTAGTATGGTAGGAGGTATAAAGGAGACGCAAGAGATGGTGGATTTGGC 1164 |||||| |||| |||||| ||||||| ||||| ||||| || || ||| | ||| |||| Sbjct 897 GATGGTAATGGGAAGTATGATAGGAGGGATAAAAGAGACTCAGGAAATGATAGATATGGC 956 Query 1165 TGGAAAACACAACATCACGGCGGATATTGAGCTCATCTCTGCGGATTATGTCAACACCGC 1224 || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 957 CGGGAAACACAACATCACCGCGGATATTGAGCTTATCTCTGCGGATTATGTCAACACCGC 1016 Query 1225 CATGGAACGGCTTGCA-AAGGCTGACGTTAAGTACCGATTTGTGATTGATGTTGCCAACA 1283 |||||||||||| | | ||||| ||||||| |||||| |||||||||||||||||||||| Sbjct 1017 CATGGAACGGCTCG-AGAAGGCCGACGTTAGGTACCGCTTTGTGATTGATGTTGCCAACA 1075 Query 1284 CGAT-GAAGCC-AACTCCTTAACT-AGAAAG-CTTAAGAATTGAATATCC 1329 | || |||||| ||| ||| || | | || | |||||| ||| ||| ||| Sbjct 1076 C-ATTGAAGCCTAAC-CCT-AATTTATAA-GTCTTAAGCATTAAATTTCC 1121 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56183111375 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5