BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38380.1
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490600 jgi|Araly1|490600|fgenesh2_kg.7__33__AT4G38380.1 2717 0.0
> Ahg490600 jgi|Araly1|490600|fgenesh2_kg.7__33__AT4G38380.1
Length=1792
Score = 2717 bits (1471), Expect = 0.0
Identities = 1697/1798 (94%), Gaps = 48/1798 (3%)
Strand=Plus/Plus
Query 75 TAAGTTTCGG-TTTTGAATCGTTTCTTCTCCTCTGCCACTATCGTCTTCTTCTCGGTTTT 133
||||||| || ||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 19 TAAGTTT-GGATTTTGAATCGTTTCTTCTCCTTTACCAGTATCGTCTTCTTCTCGGTTTT 77
Query 134 CTATATCGTTT-------TAGTTTCTTTCACCGTCGTTTCTTTTCTCTCCCACGCTCATC 186
||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 78 CTATATCGTTTGCGAAACTAGTTTCGTTCACCGTCGTTTCTTTTCTCTCCCACACTCATC 137
Query 187 CAATTTTCTTCCCCTAAAGAACCGGAATTTAGTGTCTGTGTGTGATGGAGTCCAGTAGAG 246
||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 138 CAA-----TT----GAAAGAACCGGATTTTAGTGTTTGTGTGTGATGGAGTCCAGTAGAG 188
Query 247 TAGTAGTGGGT-GG-TG---G----GCTGCCCTTGGCGAATAGGAGGAACTCTAGCTTTG 297
||||||| ||| || | | |||||| || |||||||||||||||||||| || |
Sbjct 189 TAGTAGTTGGTGGGCAGCAAGTTTCGCTGCCATTTGCGAATAGGAGGAACTCTAGGTTGG 248
Query 298 CCAAACCCAAAATCCAACAAGGGACTTTTCTACCTCTATCTCGGATCAATAATGTCTCTG 357
||||||| || ||||||||||||||||||||||| |||||||||||||| |
Sbjct 249 CCAAACCGAATTTCCAACAAGGGACTTTTCTACCTATATCTCGGATCAAT-A-------- 299
Query 358 CCCCCCAAAAATGCTCCCTTCACACCAATCCAAACCCCATGT-TCCCTTTTGTTACTCGC 416
||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 300 ------AAAAATGCTCCCTTCACACCAATCCAAACCCTATGTAT-CCTTTTGTTACTCGC 352
Query 417 CGCAAGAGCCAGACTAACCCTGATTGCGGTGTCGTCAAGTTGGGGGAAGAAGATGACTCT 476
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 353 CGCAAGAGCCAGACTAACCCTGATTGCGGTGTTGTCAAGTTGGGGGAAGAAGATGACTCT 412
Query 477 TG-CTCTTCACTGGACAAACTCCCGGAGGTTAATGGGGTTCACACTGGTGTAG-CACGTC 534
|| | | |||||||||||||||||| |||| ||||| ||||||||| || || ||||||
Sbjct 413 TGCCGC-TCACTGGACAAACTCCCGTTGGTTCATGGGCTTCACACTGCTG-AGCCACGTC 470
Query 535 CTGTCGATATCAAACGAGAACTCGTGATGCTCTCTCTTCCAGCCATTGCTGGCCAAGCTA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CTGTCGATATCAAACGAGAACTCGTGATGCTCTCTCTTCCAGCCATTGCTGGCCAAGCTA 530
Query 595 TTGATCCTTTGACGCTGCTAATGGAGACTGCATACATCGGAAGGCTCGGATCTGTAGAGT 654
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TAGATCCTTTGACGCTACTCATGGAGACTGCATACATCGGAAGGCTCGGATCTGTAGAGT 590
Query 655 TGGGTTCAGCTGGCGTTTCCATGGCCATTTTCAATACCATATCAAAGCTCTTCAACATTC 714
||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 591 TGGGTTCCGCTGGCGTTTCCATGTCCATCTTCAATACCATATCAAAGCTCTTCAACATTC 650
Query 715 CGCTCCTCAGCGTTGCCACTTCTTTCGTCGCTGAAGATATTGCAAAGATTGCCGCTCAAG 774
| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 651 CACTCCTCAGCGTTGCCACCTCTTTTGTCGCTGAAGATATTGCAAAGATTGCCGCTGAAG 710
Query 775 ATTTAGCCTCAGAAGATAGTCAGAGTGACATACCTTCTCAAGGTTTACCAGAAAGGAAAC 834
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 711 ATTTAGCCTCAGAAGATAGTCATAGTGACATACCTTCTCAAGCTTTACCAGAAAGGAAAC 770
Query 835 AGTTATCTTCAGTGTCAACAGCGCTAGTGTTAGCCATTGGAATTGGCATCTTCGAGGCAC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGTTATCTTCAGTGTCAACAGCGCTAGTGTTAGCCATTGGAATTGGCATCTTCGAGGCAC 830
Query 895 TGGCATTGTCTTTGGCATCTGGACCCTTTCTAAGGTTAATGGGTATACAATCTATGTCAG 954
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 831 TGGCTTTGTCTTTGGCATCTGGACCCTTTCTAAGGTTAATGGGTGTACAATCTATGTCAG 890
Query 955 AAATGTTCATCCCTGCGCGGCAGTTTCTTGTCCTTAGGGCGCTTGGTGCTCCTGCTTATG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AAATGTTCATCCCTGCGCGGCAGTTTCTTGTCCTTAGGGCGCTTGGTGCTCCTGCTTATG 950
Query 1015 TGGTTTCCTTAGCACTTCAAGGCATTTTTCGTGGATTCAAGGATACAAAAACTCCAGTCT 1074
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TGGTTTCTTTAGCTCTTCAAGGCATTTTTCGTGGATTCAAGGATACAAAAACTCCAGTCT 1010
Query 1075 ACTGTTTAGGTATTGGTAATTTTCTGGCTGTATTTCTATTCCCTCTGTTTATATACAAAT 1134
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1011 ACTGTTTAGGCATTGGTAATTTTCTGGCTGTATTTCTATTCCCTCTGTTTATATACAAGT 1070
Query 1135 TCAGGATGGGTGTAGCCGGGGCAGCAATCTCTAGTGTCATCTCCCAGTACACTGTTGCCA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TCAGGATGGGTGTAGCCGGGGCAGCAATCTCTAGTGTCATCTCCCAGTACACTGTTGCCA 1130
Query 1195 TTTTGATGCTTATACTCTTGAACAAAAGAGTTATACTGCTTCCTCCAAAGATTGGGTCAC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTTTGATGCTTATACTCTTGAACAAAAGAGTTATACTGCTTCCTCCAAAGATTGGGTCAC 1190
Query 1255 TAAAGTTCGGCGATTACCTAAAATCAGGGGGATTTGTTCTGGGAAGGACTCTTTCTGTGC 1314
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1191 TAAAGTTCGGCGATTACCTAAAATCAGGGGGATTTGTTCTTGGAAGGACTCTGTCTGTGC 1250
Query 1315 TCGTGACCATGACTGTTGCCACATCAATGGCGGCTCGTCAGGGAGTTTTCGCAATGGCAG 1374
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TCATGACCATGACTGTTGCCACATCAATGGCGGCTCGTCAGGGAGTTTTCGCAATGGCAG 1310
Query 1375 CACATCAGATATGCATGCAAGTGTGGTTGGCGGTATCTCTGCTTACTGATGCACTAGCTT 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CACATCAGATATGCATGCAAGTGTGGTTGGCGGTATCTCTGCTTACTGATGCACTAGCTT 1370
Query 1435 CATCTGGACAGGCCTTGATCGCGAGCTCTGCATCCAAAAGAGACTTTGAAGGTGTGAAAG 1494
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1371 CATCTGGACAGGCCTTGATCGCGAGTTCTGCATCCAAAAGAGACTTTGAAGGTGTGAAAG 1430
Query 1495 AGGTTACTACTTTTGTTCTGAAGATAGGAGTGGTGACTGGGATCGCACTGGCTATTGTGT 1554
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||
Sbjct 1431 AGGTTACTACTTTTGTTCTGAAGATAGGAGTGGTGACAGGGATTGCACTTGCTGTTGTGT 1490
Query 1555 TGGGGATGTCTTTCAGTTCAATAGCTGGTTTGTTTTCCAAAGACCCTGAAGTTCTGCGGA 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TGGGGATGTCTTTCAGTTCAATAGCTGGTTTGTTTTCCAAAGACCCTGAAGTTCTGCGGA 1550
Query 1615 TTGTGAGAAAGGGTGTATTGTTTGTAGCGGCGACTCAACCAATAACAGCGCTAGCGTTTA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 TTGTGAGAAAGGGTGTATTGTTTGTAGCGGCGACTCAACCAATAACAGCGCTAGCGTTTA 1610
Query 1675 TCTTTGATGGGCTGCACTATGGGATGTCTGACTTCCCCTACGCGGCTTGCTCGATGATGG 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TCTTTGATGGGCTGCACTATGGGATGTCTGACTTCCCCTACGCGGCTTGCTCGATGATGG 1670
Query 1735 TGGTGGGAGGAATATCATCAGCGTTCATGCTGTATGCACCGGCAGGGTTGGGGCTAAGTG 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TGGTGGGAGGAATATCATCAGCGTTCATGCTGTATGCACCGGCAGGGTTGGGGCTAAGTG 1730
Query 1795 GAGTGTGGGTGGGGCTGAGCATGTTCATGGGATTGCGGATGGTGGCTGGATTCAGCAG 1852
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1731 GAGTGTGGGTGGGGCTGAGCATGTTCATGGGATTGCGGATGGTGGCTGGATTTAGCAG 1788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71876292315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5