BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38420.1
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490604 jgi|Araly1|490604|fgenesh2_kg.7__37__AT4G38420.1 2638 0.0
Ahg328883 jgi|Araly1|328883|fgenesh1_pm.C_scaffold_7001110 1391 0.0
> Ahg490604 jgi|Araly1|490604|fgenesh2_kg.7__37__AT4G38420.1
Length=1807
Score = 2638 bits (1428), Expect = 0.0
Identities = 1589/1667 (95%), Gaps = 10/1667 (1%)
Strand=Plus/Plus
Query 45 tcttcttcttGTCAAAGCGAGTATGTGCTGGTGGCTAAATGGGGCCGTTTGGACGATGAT 104
||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 1 TCTTCTTCTTGTCAAAGCGAGTATGGGCTGGTGGCTAAATGGCGCCGTTTGTACGATGAT 60
Query 105 GATGATGACGATATCCATCATTTCTTTTGTTCAAGCTGATGATCCCTACCGTTTTTTCGA 164
|||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATG--G-CCATATCCACCATTTCTTTTGTTCAAGCTGATGATCCCTACCGTTTTTTCGA 117
Query 165 CTGGAGAGTCACTTACGGCAACATTTCTCCACTTGGCATTCCTCAAAGGGGAATCCTGAT 224
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTGGAGGGTCACTTACGGCAACATTTCTCCACTTGGCATTCCTCAAAGGGGAATCCTGAT 177
Query 225 AAACGGACAATATCCAGGACCCGATATTTACTCAGTCACCAATGACAATTTGATCATCAA 284
||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 178 TAACGGACTATATCCTGGACCCGATATTTACTCCGTCACCAACGACAATTTGATCATCAA 237
Query 285 TGTTCACAACGATCTCGACGAGCCCTTTCTCTTATCTTGGAACGGAGTGCAACTGAGGAA 344
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGTTCACAACGATCTTGACGAACCCTTTCTCTTATCTTGGAACGGAGTGCAACTGAGGAA 297
Query 345 GAATTCTTACCAAGATGGAGTGTATGGGACGACTTGTCCAATCCCACCGGGTAAAAACTA 404
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 298 GAATTCTTACCAAGATGGAGTGTATGGGACGACTTGTCCAATCCCACCGGGCAAAAATTA 357
Query 405 CACTTATGCCATCCAAGTCAAAGACCAGATCGGTAGTTTCTTCTATTTCCCTTCCCTCGC 464
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 CACTTATGCCATCCAAGTCAAAGACCAGATCGGTAGTTTCTTCTACTTCCCTTCCCTCGC 417
Query 465 CGTTCACAAAGCTGCCGGTGGTTTTGGCGGTTTCCGTATCCTCAGCCGCCCTCGCATCCC 524
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CGTTCACAAAGCCGCCGGTGGTTTTGGCGGTTTCCGTATCCTCAGCCGCCCTCGCATCCC 477
Query 525 CGTCCCTTTCCCTGAACCCGCTGGAGATTTCACCTTCCTCATTGGTGATTGGTTTAAGCA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 CGTCCCTTTCCCTGAACCCGCTGGAGATTTCACCTTCCTCATTGGTGATTGGTTTGAGCA 537
Query 585 TGACCACAAGGTTTTGAAGGCAATTTTGGATAGAGGACACAAGCTACCTTTGCCTCAAGG 644
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 TGACCACAAGGCTTTGAAGGCAATTTTGGATAGAGGACACAAGCTACCTTTGCCTGAAGG 597
Query 645 GGTTTTGATCAATGGCCAAGGAGTCAGTTACATGTCTTC-CATCACCGTCCACAAAGGTA 703
||||||||||||||||||||||||||||||||| ||||| | | || |||||||||||||
Sbjct 598 GGTTTTGATCAATGGCCAAGGAGTCAGTTACATTTCTTCACTT-ACAGTCCACAAAGGTA 656
Query 704 AAACATACAGATTTAGGATATCGAATGTAGGGCTTCAACACACTCTGAATTTCAGAATCC 763
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 657 AAACATACAGATTTAGAATATCGAATGTAGGGCTTCAAAACACTCTGAATTTTAGAATCC 716
Query 764 AAGGTCATCAGATGAAGCTCGTTGAGGTAGAGGGAACACACAC-AGTCCAGTCCATGTAT 822
|||||||||||||||||||||| ||||| |||||||| || || | | ||||||||||||
Sbjct 717 AAGGTCATCAGATGAAGCTCGTCGAGGTTGAGGGAACCCATACCA-TACAGTCCATGTAT 775
Query 823 ACCTCTCTCGACATTCACGTTGGACAGTCTTACTCGGTCTTGGTCACCATGGACCAGCCT 882
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 776 ACCTCTCTCGACATTCACGTTGGACAGTCTTACTCCGTCTTGGTCACCATGGACCAGCCT 835
Query 883 GACCAAGACTATGACATTGTCGTCTCCACAAAATTTGTCGCCAAAAAACTCTTGGTCTCA 942
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 836 GACCAAGACTATGACATTGTCGTCTCCACAAAATTTGCCGCCAAAAAACTCTTGGTCTCA 895
Query 943 TCTACTATCCACTACTCCAACTCAAGACATAGCC---ACTCATCTTCTGCTAATTCAGTC 999
|| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 896 TCCACTATCCACTACTCCAACTCAAGACATAGCCGCCACTCATCGTCTGCTAATTCTGTC 955
Query 1000 CATGTTCAACAACCTGCCGATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGG 1059
|||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CATGCTGAGCAACCTGCCGATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGA 1015
Query 1060 ACCAATCTAACCGCGTCTGGGCCAAGGCCTAACCCTCAGGGTTCGTACCACTATGGTCGA 1119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1016 ACCAATCTAACCGCGTCTGGGCCAAGGCCTAACCCTCAGGGCTCGTACCACTATGGTCGA 1075
Query 1120 ATCAAGATTTCTAGGACTTTGATATTGGAAAGCTCAGCGGCACTAGTGAAGAGGAAGCAA 1179
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 1076 ATCAAGATTTCTAGGACTTTAATATTGGAAAGCTCAGCGGCACAAGTGAGGAGGAAGCAA 1135
Query 1180 CGCTACGCCATAAACGGAGTGTCGTTTGTACCTGGAGATACTCCGCTAAAGCTTGCGGAT 1239
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||
Sbjct 1136 CGCTACGCCATAAACGGAGTGTCGTTTGTAGCTGCAGATACTCCGCTAAAGCTTGCAGAT 1195
Query 1240 TACTTCAAGATCAAAGGCGTTTTCAAAATGGGAAGCATACCTGACAAGCCGAGAAGAGGA 1299
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1196 TACTTCAAGATCAAAGGCGTTTTCAAAGTGGGAAGCATCCCTGACAAGCCGAGAAGAGGG 1255
Query 1300 AGAGGGATGAGAATGGAGACGTCAGTGATGGGAGCACACCATAGAGACTTCCTTGAAATC 1359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GGAGGGATGAGAATGGAGACGTCAGTGATGGGAGCACACCATAGAGACTTCCTTGAAATC 1315
Query 1360 ATATTTCAAAACCGCGAGAAGATCGTCCAAAGCTACCACCTCGATGGATATAGTTTTTGG 1419
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1316 ATATTTCAAAACCGCGAGAAGATTGTCCAAAGTTACCACCTCGATGGATATAGTTTTTGG 1375
Query 1420 GTTGTTGGGACGGATAGAGGAACATGGTCAAAAGCAAGCAGACGAGAGTATAATCTTAGG 1479
||||| |||| |||||||||||||||||| |||| || ||||||||||||||||| |||
Sbjct 1376 GTTGTCGGGATGGATAGAGGAACATGGTCGCAAGCGAGTAGACGAGAGTATAATCTCAGG 1435
Query 1480 GATGCTATTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTG 1539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GATGCTATTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTA 1495
Query 1540 GCACTGGACAATGTGGGGATGTGGAATCTAAGGAGTGAATATTGGGCGAGGCAATACTTG 1599
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1496 GCACTGGACAATGTGGGGATGTGGAATCTAAGGACTGAATATTGGGCGAGGCAATACTTA 1555
Query 1600 GGTCAACAATTCTACCTTCGAGTTTATTCTCCAACACACTCTCTTAGAGATGAATATCTT 1659
|| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1556 GGCCAACAATTCTACCTCCAAGTTTATTCTCAAACACACTCTCTTAGAGATGAATATCTT 1615
Query 1660 TTGCCTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAATAAACACAC 1706
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1616 TTGCCTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAGTAAACACAC 1662
Score = 171 bits (92), Expect = 2e-41
Identities = 111/120 (93%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 1769 TATATTGAGTTCTTTATTCTTTATAATTTCAATAGCTAGATATATGTTGCACAATTATTA 1828
||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1690 TATGTTGAGTTCTTTATTCTTTAT-ATTTCGATAGCGAGATATATGTTGCACAATTATTA 1748
Query 1829 TATATACTTCAAAAATTGTAATGTATACCCAAATTTGATGAAAATTTTACTGTTTTGTAA 1888
|| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1749 -ATCTACTACATAAATTGTAATGTACACCCAAATTTGATGAAAATTTTACTGTTTTGTAA 1807
> Ahg328883 jgi|Araly1|328883|fgenesh1_pm.C_scaffold_7001110
Length=1641
Score = 1391 bits (753), Expect = 0.0
Identities = 1370/1659 (83%), Gaps = 78/1659 (5%)
Strand=Plus/Plus
Query 73 TGGTGGCTAAATGG-GGCCGTTTGGACGATGATGATGATGACGATATCCATCATTTCTTT 131
||||||||||| || || |||| | ||||||||||| ||| | ||||||||| |||
Sbjct 7 TGGTGGCTAAACGGAGG-TGTTT-G--GATGATGATGACAACG--A-CCATCATTTATTT 59
Query 132 TGTTCAAGCT-GATGATCCCTACCGTTTTTT-CGACTGGAGAGTCACTTACGGC-AACAT 188
|||| ||||| || || |||| |||||| | ||||||| |||||||||||| || ||
Sbjct 60 TGTTAAAGCTGGA-GA----TACCCTTTTTTACAACTGGAGGGTCACTTACGGCGAA-AT 113
Query 189 TTCTCCACTTGGCATT-CCTCAAAGGGGAATCCTGATAAACGGACAATATCCAGGACCCG 247
|||| || | | || |||| |||||||||||| ||||||||||||| ||| ||||| |
Sbjct 114 ATCTCTACGT-ACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGG 172
Query 248 ATATTTACTCAGTCACCAATGACAATTTGATCATCAATGTTCACAACGATCTCGACGAGC 307
| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 173 AGATTCGCTCACTCACCAATGACAATTTGGTCATCAATGTTCACAACGATCTCGACGAGC 232
Query 308 CCTTTCTCTTATCTTGGAACGGAGTGCA-ACTGAGGAAGAATTCTTACCAAGATGGAGTG 366
||||||||||||| ||||| |||||||| | ||||||| ||||| |||||||||||||||
Sbjct 233 CCTTTCTCTTATCGTGGAATGGAGTGCACA-TGAGGAAAAATTCGTACCAAGATGGAGTG 291
Query 367 TATGGGACGACTTGTCCAATCCCACCGGGTAAAAACTACACTTATGCCATCCAAGTCAAA 426
|||||||||||||||||||||||||| || || || |||||||||| | | |||||||||
Sbjct 292 TATGGGACGACTTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAA 351
Query 427 GACCAGATCGGTAGTTTCTTCTATTTCCCTTCCCTCGCCGTTCACAAAGCTG-CCGGTGG 485
|| ||| ||||||||| ||| || |||||||||||||| || || ||| ||| |||||||
Sbjct 352 GATCAGGTCGGTAGTTACTTTTACTTCCCTTCCCTCGCAGTCCAAAAA-CTGGCCGGTGG 410
Query 486 TTTTGGCGGTTTCCGTATCCT-CAGCCGCCCTCGCATCCCCGTCCCTTTCCCTGAACCCG 544
|| |||| | |||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 411 TTATGGCAGCCTCCGTATC-TACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCG 469
Query 545 CTGGAGATTTCACCTTCCTCATTGGTGATTGGTTTA-AGCATGACCACAAGGTTTTGAAG 603
| |||||||||||||||||||| || ||||||| | | | | |||| | | |||||||
Sbjct 470 CAGGAGATTTCACCTTCCTCATAGGCGATTGGTATCGA-CGTAACCATACGACTTTGAAG 528
Query 604 GCAATTTTGGATAGAGGACACAAGCTACCTT---TGCCTCAAGGGGTTTTGATCAATGGC 660
|||||||||| |||||| |||| |||| ||||| | |||||| |||||||||||
Sbjct 529 AAAATTTTGGATGGAGGACGCAAGTTACCGACGATGCCTGATGGGGTTATGATCAATGGC 588
Query 661 CAAGGAGTCAGTTACATGTCT-TCC-ATCACCGTCCACAAAGGTAAAACATACAGATTTA 718
|||||| | |||| | ||| | | | ||||||||| ||||||||||||| |||||||| |
Sbjct 589 CAAGGATTAAGTT-C-TGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCA 646
Query 719 GGAT-ATCGAATGTAGGGCTTCAACA-CACTCTGAATTTCAGAA-TCCAAGGTCATCAGA 775
| || ||| ||||||||||||||| | | | || |||||| ||| | ||||||||||
Sbjct 647 G-ATTATCAAATGTAGGGCTTCAA-AGCTCCCTCAATTTC-GAAATATTAGGTCATCAGC 703
Query 776 TGAAGCTCGTTGAGGTAGAGGGAACACACACAGTCCAGTCCATGTATACCTCTCTCGACA 835
| |||||| ||||||| |||||||| ||||| ||||| |||||||| ||||| |||||||
Sbjct 704 TTAAGCTCATTGAGGTCGAGGGAACCCACACGGTCCAATCCATGTACACCTCCCTCGACA 763
Query 836 TTCACGTTGGACAGTCTTACTCGGTCTTGGTCACCATGGACCAGCCTGACCAAGACTA-T 894
|||| ||||| || ||||||| |||||||||||||||||||| ||| |||| |||| |
Sbjct 764 TTCATGTTGGTCAAACTTACTCTGTCTTGGTCACCATGGACCAACCTCCCCAAAACTACT 823
Query 895 GACATTGTCGTCTCCACAAAATTTGTCGCCAAAAAACTCTTGGTCTC--ATCTACTATCC 952
||| ||||| ||||||| |||| ||| | | | | |||| | ||| ||| |||
Sbjct 824 C-CATAGTCGTTTCCACAAGATTTATCGGCGCAGA-CG-TTGGGGTGGGATCCACTCTCC 880
Query 953 ACTACTCCAACTC-AA-GAC-ATA-GCCACTCATCTTCTGCTAATTCAGTCCATGTTCAA 1008
||||||||||||| || | | ||| | | | ||| || || || || || || |
Sbjct 881 ACTACTCCAACTCCAAAGGCCATAAG--ATT-ATCC-CTTCTCGGGCA--CC-TGATCCA 933
Query 1009 CAACCTGCCGATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGGACCAATCTA 1068
|| || || | |||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 934 -AA--TG---AT-A--TAGAATGGTCTATCAAACAAGCCCAGTCCATTAGGACCAACCTA 984
Query 1069 ACCGCGTCTGGGCCAAGG-CCTAACCCTCAGGGTTCGTACCACTATGGTCGAATCAAGAT 1127
|| ||||| ||||||||| || | |||||| || |||||||| |||||| ||| |||||
Sbjct 985 ACTGCGTCCGGGCCAAGGACCGA-CCCTCAAGGCTCGTACCATTATGGTAAAATGAAGAT 1043
Query 1128 TTCTAGGACTTTGATATTGGAAAGCTCAGCGGCACTAGTGAAGAGGAAGCAACGCTACGC 1187
|||||||| ||| |||||||||||||||||||| || ||||| || ||||||||||| ||
Sbjct 1044 TTCTAGGAATTTAATATTGGAAAGCTCAGCGGCTCTTGTGAAAAGAAAGCAACGCTATGC 1103
Query 1188 CATAAACGGAGTGTCGTTTGTACCTG-GAGATACTCCGCTAAAGCTTGCGGATTACTTCA 1246
||| | ||| || ||||| || ||| | ||||||||||| ||||| |||||| | || |
Sbjct 1104 CATTAGCGGTGTCTCGTTCGTGCCTCCG-GATACTCCGCTGAAGCTGGCGGATCATTTTA 1162
Query 1247 AGATCAAAGGCGTTTTCAAAATGGGAAGCATACCTGACAAGCCGAGAAGAGGAAGAGGGA 1306
|||| ||| ||||| ||| | |||||||| ||||||||||||||||||||| ||||||
Sbjct 1163 AGATAAAAAATGTTTTTAAAGTCGGAAGCATCCCTGACAAGCCGAGAAGAGGAGGAGGGA 1222
Query 1307 TGAGAATGGAGACGTCAGTGATGGGAGCACACCATAGA-GACTTC-CTTGAAATCATATT 1364
|||| | || || |||||||||||||||||||| | | | ||| ||||| ||||| ||
Sbjct 1223 TGAGGCTAGACACATCAGTGATGGGAGCACACCACA-ATG-CTTTTCTTGAGATCATCTT 1280
Query 1365 TCAAAACCGCGAGAAGATCGTCCAAAGCTACCACCTCGATGGATATAGTTTTTGGGTTGT 1424
|||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||
Sbjct 1281 TCAAAACCGCGAGAAGATAGTCCAAAGTTACCACCTCGATGGATACAACTTTTGGGTTGT 1340
Query 1425 TGGGA-CGGATAGAGGAACATGGTCAAAAGCAAGCAGACGAGAGTATAATCTTAGGGATG 1483
||||| | ||| ||||| ||||||| | || ||||||||||||||||| || | |||||
Sbjct 1341 TGGGATCA-ATAAAGGAATATGGTCACATGCGAGCAGACGAGAGTATAACCTCAAGGATG 1399
Query 1484 CTATTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTGGCAC 1543
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1400 CTATTTCTCGCTCCACTACTCAAGTATATCCAGAATCTTGGACAGCTATATATGTGGCAT 1459
Query 1544 TGGACAATGTGGGGATGTGGAATCTAAGGAGTGAATAT-TGGGCGAGGCAATACTTGGGT 1602
||||||||||||||||||||||||||||||| | | | |||||||| |||||||| |||
Sbjct 1460 TGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGT-TCTGGGCGAGACAATACTTAGGT 1518
Query 1603 CAACAATTCTACCTTCGAGTTTATTCTCCAACACACTCTCTTAGAGATGAATATCTTTTG 1662
|||||||||||||||||||||||||||||| |||||||| | ||||||||| | ||||
Sbjct 1519 CAACAATTCTACCTTCGAGTTTATTCTCCAGTTCACTCTCTCAAAGATGAATACCCTTTG 1578
Query 1663 CCTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAATAAA 1701
|| || ||||||||||||||||| || |||||||| |||
Sbjct 1579 CCCAAAAATGCTTTGTTGTGTGGTCGGGCCTCCAACAAA 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5