BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38430.1
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490605 jgi|Araly1|490605|fgenesh2_kg.7__38__AT4G38430.1 2863 0.0
Ahg947226 jgi|Araly1|947226|scaffold_703455.1 270 2e-71
> Ahg490605 jgi|Araly1|490605|fgenesh2_kg.7__38__AT4G38430.1
Length=1906
Score = 2863 bits (1550), Expect = 0.0
Identities = 1822/1944 (94%), Gaps = 55/1944 (3%)
Strand=Plus/Plus
Query 1 GAAAGGAGTCTTTTTTATTTGTTAtctctcatctctctctctctttctctctGAGCTTTG 60
|||||||||||||||||||| |||||||||| |||||| ||||| ||||||
Sbjct 1 GAAAGGAGTCTTTTTTATTTTTTATCTCTCA------TCTCTC---ATCTCT--GCTTTG 49
Query 61 CTTTTTATCAAACAA----GCATCATCATCACATCCACTTCCTTCTTCTTCCTTTCTCTG 116
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 50 CTTTTTATCAAACAAGCTCGCATCATCATCACATCCACTTCCTTCTTCTTCCTTTCTCT- 108
Query 117 TCTGTCTCTTAACCCAAATGTGGACTCTTTGAGCCGTTATTAGATCTCTGCCG-CT---T 172
| || |||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 109 T-TG--------CCCAAATGTGGATTCTTTGAGCCGTTATTAGATCTCTGCCGCCTACCT 159
Query 173 -CAATAATGGGGAGCTTATCTTCTGAGGAAGACGACGAAGTCTCTTCCGAGAGATGCGGA 231
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 160 ACAATAATGGGGAGCTTATCTTCTGAGGAAGACGACCAAGTCTCTTCCGAGAGATGCGGA 219
Query 232 AGTTACAGTCCCAGCGCCGACATTAGCGAGTCCGAGAGTTCCAGCAGCTTCTCCTGCCAC 291
|||||||||||||||||||||||||||||||| ||||||| | || |||
Sbjct 220 AGTTACAGTCCCAGCGCCGACATTAGCGAGTCTGAGAGTT-C--CA----------CCA- 265
Query 292 CGCTTCGACGGCGAGGGTGCCTCTAGCTCCATCCCTTCTTCCCCTCGAGTTGTCGCTGGT 351
|||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 266 -GCTTCGACGGCGAGGGACCCTCTAGCTCCATCCCTTCTTCCCCCCGGGTTGTCGCTGGG 324
Query 352 AGAGGATTTTACTTCCCGGCC-CCAGTCATGCTTCCGGTGATCGGCGGCAAAGATGTGGT 410
||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 325 AGAGGCTTTTACTTCCC-GCCGCCAGTTATGCTTCCGGTGATCGGCGGCAAAGATGTGCT 383
Query 411 CTGGGATGACAAACAACCAG---ACAACGATTTATCCGAAATTGAGATGATGAAGGAGAG 467
||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 384 CTGGGATGACAAACAGTCAGACAACAACGATTTCTCCGAAATTGAGATGATGAAGGAGAG 443
Query 468 ATTTGCTAAGCTACTTCTCGGGGAAGACATGTCTGGTGGAGGTAAAGGGGTTTGTACGGC 527
||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct 444 ATTTGCTAAGCTACTTCTCGGAGAAGACATGTCAGGAGGAGGTAAAGGTGTTTGTACGGC 503
Query 528 GCTTGCTATCTCCAACGCCATCACCAATCTCTCTGCGACTGTGTTTGGCGAACTATGGAG 587
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 504 GCTTGCTATCTCCAACGCCATCACCAATCTCTCTGCGACTGTCTTCGGCGAGCTATGGAG 563
Query 588 GCTTGAGCCTCTTGCTCCTCAGAAGAAGGCCATGTGGCGCAGAGAACTTGAGTGGCTGCT 647
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 564 GCTTGAGCCTCTTGCTCCTCAGAAGAAGGCTATGTGGCGCAGAGAACTTGAATGGCTACT 623
Query 648 CTGTGTTAGCGATTCTATCGTTGAGCTCATTCCTTCCATTCAGCAGTTCCCTGGAGGCGG 707
||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 624 CTGTGTTAGCGATTCTATCGTTGAGCTCATTCCTTCCCTTCAGCACTTCCCCGGAGGCGG 683
Query 708 AACTTATGAGATCATGGAGACCCGTCCACGTTCTGATCTCTATGCCAATCTCCCTGCTCT 767
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 684 CACTTATGAGATCATGGAGACCCGTCCACGCTCTGATCTCTATGCCAATCTCCCTGCTCT 743
Query 768 CAAGAAGCTCGATGCTATGTTGATCGATATGCTTGACGCTTTCTCCGATACTGAGTTCTG 827
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 744 CAAGAAGCTCGATGCTATGTTGATCGATATGCTTGACGCTTTCTCCGATACCGAGTTCTG 803
Query 828 GTACACTGATCGCGGCATAGTTCTTGGTGATTGTGACAAGGATTCTTACAATTCTCCAGC 887
||| |||||||||||||| |||||||| || ||||||||||||||||||||||| |||||
Sbjct 804 GTATACTGATCGCGGCATTGTTCTTGGAGAATGTGACAAGGATTCTTACAATTCCCCAGC 863
Query 888 TTCCGTTAGGCAGGAGGACAAGTGGTGGCTGCCTTGCCCTAAGGTTCCGCCTAACGGTTT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TTCCGTTAGGCAGGAGGACAAGTGGTGGCTGCCTTGCCCTAAGGTTCCGCCTAACGGTTT 923
Query 948 GTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGCTAACCAGATTCTCAA 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGCTAACCAGATTCTCAA 983
Query 1008 GGCTGCATTGGCAATTAACAGTGGCGTGCTTGCCGAAATGGAGATTCCCGACCCTTACTT 1067
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 984 GGCTGCATTGGCAATTAACAGCGGTGTGCTCGCCGAAATGGAGATTCCCGACCCTTACTT 1043
Query 1068 GGAGACTTTGCCCAAGAGCGGGAAGGAATGTCTTGGAGAGATCATCTACCAGTACTTAAC 1127
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GGAGACTTTGCCCAAGAGCGGAAAGGAATGTCTTGGAGAGATCATCTACCAGTACTTAAC 1103
Query 1128 TGCAAACAAGTTCTCTCCCGAATGCCTCCTGGACTGTCTTGATCTCTCATCGGAACATCA 1187
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1104 TGCAAACAAGTTCTCTCCCGAATGCCTCCTAGACTGTCTTGATCTCTCATCGGAGCATCA 1163
Query 1188 GACTCTTGAAATCGCCAACCGGATTGAGGCGGCTGTGCATGTTTGGAGACAAAAGAATGG 1247
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1164 GACTCTTGAAATCGCCAACCGGATTGAGGCGGCTGTGCACGTTTGGAGACAGAAGAATGG 1223
Query 1248 GAGGAGGCACAAGAAGCAGGCGAAACTAAAGCTGTCTTCTTGGGGTGGCAAGGTTAAAGG 1307
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1224 GAGGAGGCACAAGAAGCAGGCGAAACTAAAGCTGTCTTCATGGGGTGGCAAGGTTAAAGG 1283
Query 1308 CCTTGTTAATGACAACGAAAGAAATGATTTCCTTGTGCAGAGAGCCGAGACCCTCTTGCA 1367
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1284 CCTTGTTAATGACACCGAAAGAAATGATTTCCTAGTGCAGAGAGCCGAGACCCTCTTGCA 1343
Query 1368 GAGTCTCAGGATCCGTTTCCCGGGACTTCCCCAGACAACGCTGGACATGAACAAGATTCA 1427
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 GAGTCTTAGGATCCGTTTTCCGGGACTTCCCCAGACAACGCTGGACATGAACAAGATTCA 1403
Query 1428 GTACAACAAGGATGTAGGGCAATCAATTCTGGAGAGTTACTCTAGGGTGATGGAGAGCAT 1487
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1404 GTACAACAAGGATGTAGGGCAATCAATTCTGGAGAGTTACTCGAGGGTGATGGAGAGCAT 1463
Query 1488 GGCCTTCAACATCACGGCCAGAATAGATGATGTGCTTTATGTTGATGATGCCATGAGAAG 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 GGCCTTCAACATCACGGCCAGAATAGATGATGTGCTTTATGTTGATGATGCCATGAGAAG 1523
Query 1548 ATCCATCTCTGTCACAGAATCGCTATCCCTATTCAGCATCAATGGACTCAACCCTCAAAA 1607
||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 1524 ATCCATCTCTGTCACGGAAACGCTATCCCTATTCAGCATCAATGGACTCAACGGTCAGAA 1583
Query 1608 AGCGTTCTCTGTGCAGAGCTCTCCGCACGGTTCACCATTTGCAACGCCTGCCCTAAGTGT 1667
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1584 AGCGTTCTCTGTGCAGAGCTCTCCGCATGGTTCACCATTTGCAACGCCTTCCCTAAGTGT 1643
Query 1668 AGCATCAAGAAGCCCGAGGAGAGCACCGCCGCTGTATTCAGTGAAGAGGAATGGGACGAG 1727
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 AGCATCGAGGAGCCCGAGGAGAGCACCGCCGCTGTATTCAGTGAAGAGGAATGGGACGAG 1703
Query 1728 AGAGAAGGGAATAGTGGGAGAAACAGAGAAAGCATGGTCGTATGCAGGGAATCTGAGTTC 1787
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1704 AGAGAAGGGAATAATGGGGGAAACAGAGAAAGCATGGTCGTATGCGGGGAATCTGAGTTC 1763
Query 1788 AAGAAGAGTAACGGGAGTGACGCCGGAAAGAGATTAAGATTGAAAATAGAAGAATGTAAA 1847
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1764 AAGAAGAGTAACGGGAGTGACGCCGGAAAGAGATTAAGGTTGAAAATAGAAGAATGTAAA 1823
Query 1848 TCAATGGTTGTAGAGACTGTAGTTGTTTCTTGTTTGTCTGACTACGAAGACG-A--ATG- 1903
|||||||||||||||||||||||||||| ||||| ||||||||||||||| | | ||
Sbjct 1824 TCAATGGTTGTAGAGACTGTAGTTGTTTGTTGTTAGTCTGACTACGAAGA-GTATTATTA 1882
Query 1904 TGGTAATAGCAACAAGAATGTTAT 1927
||||||||||||||||||||||||
Sbjct 1883 TGGTAATAGCAACAAGAATGTTAT 1906
> Ahg947226 jgi|Araly1|947226|scaffold_703455.1
Length=544
Score = 270 bits (146), Expect = 2e-71
Identities = 175/189 (93%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 701 GAGGCGGAACTTATGAGATCATGGAGACCCGTCCACGTTCTGATCTCTATGCCAATCTCC 760
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGGCGGAACTTATGAGGTCATGGAGACCCGTCCACGTTCTGATCTCTATGCCAATCTCT 60
Query 761 CTGCTCTCAAGAAGCTCGATGCTATGTTGATCGATATGCTTGACGCTTTCTCCGATACTG 820
||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |
Sbjct 61 CTGCTCTCAAGAAGCTCGATGTTATGTTGATCGATATACTTGTCGCTTTCTCCGATACCG 120
Query 821 AGTTCTGGTACACTGATCGCGGCATAGTTCTTGGTGATTGTGACAAGGATTCTTACAATT 880
| |||||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 121 AATTCTGGTATACTAATCGTGGCATAGTTCTTGGTGAATGTGAAAAGGATTCTTACAATT 180
Query 881 CTCC-AGCT 888
| || ||||
Sbjct 181 C-CCGAGCT 188
Score = 252 bits (136), Expect = 9e-66
Identities = 146/151 (97%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 933 TCCGCCTAACGGTTTGTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGC 992
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TCCACCTAACGGTTTGTCAGAAGAGGCCAGGAAGAAACTGCAGCAGTGTCGGGACTTTGC 247
Query 993 TAACCAGATTCTCAAGGCTGCATTGGCAATTAACAGTGGCGTGCTTGCCGAAATGGAGAT 1052
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 248 TAACCAGATTCTCAAGGCTGCATTGGCAATTAACAGCGGCGTGCTTGCCGAAACGGAGAT 307
Query 1053 TCCCGACCCTTACTTGGAGACTTTGCCCAAG 1083
|||| |||||||||||||||| |||||||||
Sbjct 308 TCCCAACCCTTACTTGGAGACATTGCCCAAG 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74123616770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5