BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38460.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943806 jgi|Araly1|943806|scaffold_700035.1 1382 0.0
> Ahg943806 jgi|Araly1|943806|scaffold_700035.1
Length=973
Score = 1382 bits (748), Expect = 0.0
Identities = 879/938 (94%), Gaps = 25/938 (3%)
Strand=Plus/Plus
Query 134 TCTTCCTATGAAACTCTCTCCCGCTGCAATCCGATCTTCATCCTCATCTGCC-CCGGG-- 190
|||||||||||||||||||||||| ||||| |||||||||||||| | | || |||||
Sbjct 53 TCTTCCTATGAAACTCTCTCCCGCAGCAATTCGATCTTCATCCTC-T-T-CCTCCGGGTC 109
Query 191 GTCGTTGAACTTCGATCTGAGGACGTATTGGACGACTCTGATCACCGAGATCAACCAGAA 250
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 GTCGTCGAATTTCGATCTGAGGACGTATTGGACGACTCTGATCACCGAGATCAACCAGAA 169
Query 251 GCTGGATGAGGCCATACCGGTCAAGCACCCTGCGGGGATCTACGAGGCTATGAGATACTC 310
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 170 GCTGGATGAGGCCATACCGGTCAAGCACCCTGCCGGGATCTACGAGGCTATGAGATACTC 229
Query 311 TGTACTCGCACAAGGCGCCAAGCGTGCCCCTCCTGTGATGTGTGTGGCGGCCTGCGAGCT 370
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 230 TGTCCTCGCACAAGGCGCCAAGCGTGCCCCTCCTGTTATGTGTGTGGCGGCCTGCGAGCT 289
Query 371 CTTCGGTGGCGATCGCCTCGCCGCTTTCCCCACCGCCTGTGCCCTAGAAATGGTGCACGC 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 290 CTTCGGTGGCGATCGCCTCGCCGCTTTCCCCACCGCCTGTGCCCTAGAAATGGTCCACGC 349
Query 431 GGCTTCGTTGATACACGACGACCTCCCCTGTATGGACGACGATCCTGTGCGCAGAGGAAA 490
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GGCTTCGCTGATACACGACGACCTCCCCTGTATGGACGACGATCCTGTGCGCAGAGGAAA 409
Query 491 GCCATCTAACCACACTGTCTACGGCTCTGGCATGGCCATTCTCGCCGGTGACGCCCTCTT 550
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 410 GCCATCTAACCACACTGTCTACGGCTCTGGCATAGCCCTTCTCGCCGGTGACGCCCTCTT 469
Query 551 CCCACTCGCCTTCCAGCACATTGTCTCCCACACGCCTCCTGACCTTGTTCCCCGAGCCAC 610
||| |||| |||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 470 CCCTCTCGGCTTCCACCACATTGTCTCCCACACGCCCCCTGACCTTGTTCCTCGAGCCAC 529
Query 611 CATCCTCAGACTCATCACTGAGATTGCCCGCACTGTCGGCTCCACTGGTATGGCTGCAGG 670
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 530 CATCCTCAGAGTCATCGCTGAGATTGCCCGCACTGTCGGCTCCACTGGTATGGTTGCAGG 589
Query 671 CCAGTACGTCG-ACCTTGAAGGAGGTCCCTTTCCTCTTTCCTTTGTTCAGGAGAAGAAAT 729
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 590 CCAGTACG-CGGACCTTGAAGGAGGCCCCTTTCCTCTTTCCTTTGTTCAGGAGAAGAAAT 648
Query 730 TCGGAGCCATGGGTGAATGCTCTGCCGTGTGCGGTGGCCTATTGGGCGGTGCCACTGAGG 789
|||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 649 TCGGAGCCATGGGTGAATGCTCCGCCGTGTGCGGAGGCCTCTTGGGCGGTGCCACTGAGG 708
Query 790 ATGAGCTCCAGAGTCTCCGAAGGTACGGGAGAGCCGTCGGGATGCTGTATCAGGTGGTCG 849
|||||||| || ||||| |||||||||||||||||||||||||||| |||||||| || |
Sbjct 709 ATGAGCTCGAGTGTCTCAGAAGGTACGGGAGAGCCGTCGGGATGCTCTATCAGGTAGTGG 768
Query 850 ATGACATCACCGAGGACAAGAAGAAGAGCTATGATGGTGGAGCAGAGAAGGGAATGATGG 909
|||||||||||||||| |||||| | | |||| ||||| ||||| |||| |
Sbjct 769 ATGACATCACCGAGGA---GAAGAA---C-A--ATGG---AGCAGGGAAGGCAATG--G- 813
Query 910 AAATGGCGGAAGAGCTCAAGGAGAAGGCGAAGAAGGAGCTTCAAGTGTTTGACAACAAGT 969
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 814 AGATGGCGGAAGAGCTCAAGGAGAAGGCCAAGAAGGAGCTTCAAGTGTTTGACAACAAGT 873
Query 970 ATGGAGGAGGAGACACACTTGTTCCTCTCTACACCTTCGTTGACTACGCTGCTCATCGAC 1029
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATGGAGGAGGAGACACGCTTGTTCCTCTCTACACCTTCGTTGACTACGCTGCTCATCGAC 933
Query 1030 ATTTTCTTCTTCCCCTCTGA-TTTTGGGCC-CTCTTTT 1065
|||||||||||||||||||| ||||||||| |||||||
Sbjct 934 ATTTTCTTCTTCCCCTCTGAATTTTGGGCCTCTCTTTT 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5